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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB208
Library SF
(Link to library)
Clone ID SFB208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15430-1
Original site URL
Representative seq. ID SFB208P
(Link to Original site)
Representative DNA sequence 
>SFB208 (SFB208Q) /CSM/SF/SFB2-A/SFB208Q.Seq.d/
ATAGCTGCAAATTTACTTGTAAATAATAAAGGATCATTATTTATTGGTGATTTAGGTACA
GCAACATCATATACAAAAAGATCAGTATTTTCAAGTAAAGTTGTAACATTATGGTACAGA
GCACCAGAATTATTATTGGGATCAACTCAATATGGACCAGAAATTGATATGTGGTCAATT
GGTTGTGTTTTAATTGAATTAGTTACTTCACGTAACTTTTTACCAGGTAGTTCTGAACAA
CAACAGCTCGAGGCAATTTGTAAATTATGTGGTACACCAACTGATGAAATTTGGCCAAAC
GTTTCTCAATTACAAAACTTTAATCAAATTTCACATTTACCAGTTTATCCAAGTAGATTA
AGAACTGTTTTTAAAAACTTTTCAAATGATTTTATAGAATTATTAGAAGGTTTATTAACA
TTAAATCCAAAGAAAAGATTAACAGCTGAACAAGCATTACAATCACCATTTTTTACAAAT
CATCCATTACCATTTAAACCAGAGAATATGCCAGGTTATCAACCAATTCATGTTTTGGAA
GCAGTTCAAAAGAGAGTTCAACAACAACAAGAATTGGAACAACAXXXXXXXXXXAAACAA
AGACAAGAACAAGAAAGATTAAGATTAATTCAACAAGAACAAGAAAGATTAAAAAGACAN
CAACAAGAACATGAACAAAGATTACAAAGAGAACAACAACAACAATTAAATCAACTACAA
CAACAAAAAGAATCACCTTTAAATAATAGTTATGGTAAAATTAATTTAAAGAGATCTTTA
GATTTAGTTAATGATATTAGAAATTATTGTACAAGTGAAACTGAAAGTGAATATGAAAGT
GATGAAGAGGACTTTTATACTGAAGAAGAAGTTGAAGATTATTCAAGTGATGAAGAAGAT
GATTATTATAATGCTCAATCAAATAAATCACTTTATACTCCAATTAAAGCAATGATTCAA
CAACATAATAATAATCAACAACATCAACAACAATATCCATATAGTCAACAACAACAAGAA
CCAATTTCATCAAATCCATTTTTACAACCACCAAAGAAACAAAGAACTGCATCAACAGGT
TTCAATAATAACAATGGTAATAATAATAATAACAATAATTTATCAACTCCACTCACTATT
CATTAAGTTTTTTATAGTCGGTGATAGTATGAATACTTTATTGTTTTAATCATCACACAC
ATCAATTTCTCTTTTTTTTCTCCAAAAATATATTCTTAATCATGTCCGATNCTTTNACCA
AT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IAANLLVNNKGSLFIGDLGTATSYTKRSVFSSKVVTLWYRAPELLLGSTQYGPEIDMWSI
GCVLIELVTSRNFLPGSSEQQQLEAICKLCGTPTDEIWPNVSQLQNFNQISHLPVYPSRL
RTVFKNFSNDFIELLEGLLTLNPKKRLTAEQALQSPFFTNHPLPFKPENMPGYQPIHVLE
AVQKRVQQQQELEQ---

---KQRQEQERLRLIQQEQERLKRXQQEHEQRLQREQQQQLNQLQQQKESPLNNSYGKIN
LKRSLDLVNDIRNYCTSETESEYESDEEDFYTEEEVEDYSSDEEDDYYNAQSNKSLYTPI
KAMIQQHNNNQQHQQQYPYSQQQQEPISSNPFLQPPKKQRTASTGFNNNNGNNNNNNNLS
TPLTIH*vfysr**yeyfivliithinfsffspkiys*scpxlxp
Translated Amino Acid sequence (All Frames) 
Frame A:
IAANLLVNNKGSLFIGDLGTATSYTKRSVFSSKVVTLWYRAPELLLGSTQYGPEIDMWSI
GCVLIELVTSRNFLPGSSEQQQLEAICKLCGTPTDEIWPNVSQLQNFNQISHLPVYPSRL
RTVFKNFSNDFIELLEGLLTLNPKKRLTAEQALQSPFFTNHPLPFKPENMPGYQPIHVLE
AVQKRVQQQQELEQ---

---KQRQEQERLRLIQQEQERLKRXQQEHEQRLQREQQQQLNQLQQQKESPLNNSYGKIN
LKRSLDLVNDIRNYCTSETESEYESDEEDFYTEEEVEDYSSDEEDDYYNAQSNKSLYTPI
KAMIQQHNNNQQHQQQYPYSQQQQEPISSNPFLQPPKKQRTASTGFNNNNGNNNNNNNLS
TPLTIH*vfysr**yeyfivliithinfsffspkiys*scpxlxp

Frame B:
*lqiyl*iikdhyllvi*vqqhhiqkdqyfqvkl*hygtehqnyywdqlnmdqklicgql
vvf*ln*llhvtfyqvvlnnnssrqfvnyvvhqlmkfgqtflnyktlikfhiyqfiqvd*
elflktfqmil*ny*kvy*h*iqrkd*qlnkhynhhflqiihyhlnqricqvinqfmfwk
qfkrefnnnknwnn---

---nkdknkkd*d*fnknkkd*kdxnknmnkdykennnnn*inynnkknhl*iivmvkli
*rdl*i*lmileiivqvklkvnmkvmkrtfilkkklkiiqvmkkmiiimlnqinhfilql
kq*fnniiiinninnnihivnnnknqfhqihfynhqrnkelhqqvsiitmviiiitiiyq
lhslfikffivgdsmntllf*sshtsislfflqkyilnhvrxfxq

Frame C:
sckftck**riiiyw*frysniiykkisifk*scnimvqstriiiginsiwtrn*yvvnw
lcfn*isyft*lftr*f*tttargnl*imwytn**nlakrfsitkl*snftftslsk*ik
ncf*klfk*fyriirrfinikskekins*tsititifykssiti*treyarlstnscfgs
sskesstttrigtt---

---tktrtrkikinstrtrkikktxtrt*tkitkrttttiksttttkritfk**lw*n*f
keifrfs**y*kllyk*n*k*i*k**rglly*rrs*rlfk**rr*ll*csik*itlysn*
sndstt***sttsttisi*stttrtnfiksiftttketkncinrfq**qw*****q*fin
sthyslsfl*sviv*ilycfnhhthqflfffskniflimsdxxtn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFB208 (SFB208Q) /CSM/SF/SFB2-A/SFB208Q.Seq.d/                       1209   0.0
AFI641 (AFI641Q) /CSM/AF/AFI6-B/AFI641Q.Seq.d/                       1154   0.0
AFH858 (AFH858Q) /CSM/AF/AFH8-C/AFH858Q.Seq.d/                       1150   0.0
AFG131 (AFG131Q) /CSM/AF/AFG1-B/AFG131Q.Seq.d/                       1126   0.0
AFH105 (AFH105Q) /CSM/AF/AFH1-A/AFH105Q.Seq.d/                       1096   0.0
AFK733 (AFK733Q) /CSM/AF/AFK7-B/AFK733Q.Seq.d/                       1031   0.0
VFG516 (VFG516Q) /CSM/VF/VFG5-A/VFG516Q.Seq.d/                       1007   0.0
VFG875 (VFG875Q) /CSM/VF/VFG8-D/VFG875Q.Seq.d/                        983   0.0
VHF145 (VHF145Q) /CSM/VH/VHF1-B/VHF145Q.Seq.d/                        858   0.0
AFA604 (AFA604Q) /CSM/AF/AFA6-A/AFA604Q.Seq.d/                        682   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    72   2e-12  22
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    76   1e-11  13
U73195|U73195.1 Plasmodium falciparum MO15-related protein kinase Pfmrk (Pfmrk) gene, complete cds.    76   1e-09  1
BM276045|BM276045.1 PfESToaa69e08.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to TR:P90584 P90584 MO15-RELATED PROTEIN KINASE PFMRK ;, mRNA sequence.    76   1e-09  1
AF179420|AF179420.1 Plasmodium falciparum isolate FCC1/HN MO15-related protein kinase Pfmrk gene, complete cds.    76   1e-09  1
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    48   8e-08  2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   5e-07  14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   5e-06  20
AW342354|AW342354.1 GthEST211 Guillardia theta Lambda Zap II cDNA Library Guillardia theta cDNA clone Est42_49_30.T, mRNA sequence.    42   5e-06  2
AW342411|AW342411.1 GthEST268 Guillardia theta Lambda Zap II cDNA Library Guillardia theta cDNA clone Est49r, mRNA sequence.    42   5e-06  2
dna update 2003.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Y06) RecName: Full=Probable cyclin-dependent serine/threonin...   377   e-103
CP000581_439(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...   180   1e-43
CR954201_420(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   176   2e-42
AY675095_1(AY675095|pid:none) Ostreococcus tauri cell cycle depe...   176   2e-42
(Q9LFT8) RecName: Full=Cyclin-dependent kinase C-1;          Sho...   173   1e-41
AJ428950_1(AJ428950|pid:none) Physcomitrella patens mRNA for put...   171   5e-41
(Q8W4P1) RecName: Full=Cyclin-dependent kinase C-2;          Sho...   170   8e-41
AC166741_19(AC166741|pid:none) Brassica rapa subsp. pekinensis c...   170   1e-40
AY062449_1(AY062449|pid:none) Arabidopsis thaliana cdc2-like pro...   168   3e-40
EF086105_1(EF086105|pid:none) Picea sitchensis clone WS0278_P15 ...   167   9e-40
protein update 2009. 5.22
PSORT 

 psg: 0.81  gvh: 0.43  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.08
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SFB208 is nuc
5' end seq. ID SFB208F
5' end seq. 
>SFB208F.Seq
ATAGCTGCAAATTTACTTGTAAATAATAAAGGATCATTATTTATTGGTGATTTAGGTACA
GCAACATCATATACAAAAAGATCAGTATTTTCAAGTAAAGTTGTAACATTATGGTACAGA
GCACCAGAATTATTATTGGGATCAACTCAATATGGACCAGAAATTGATATGTGGTCAATT
GGTTGTGTTTTAATTGAATTAGTTACTTCACGTAACTTTTTACCAGGTAGTTCTGAACAA
CAACAGCTCGAGGCAATTTGTAAATTATGTGGTACACCAACTGATGAAATTTGGCCAAAC
GTTTCTCAATTACAAAACTTTAATCAAATTTCACATTTACCAGTTTATCCAAGTAGATTA
AGAACTGTTTTTAAAAACTTTTCAAATGATTTTATAGAATTATTAGAAGGTTTATTAACA
TTAAATCCAAAGAAAAGATTAACAGCTGAACAAGCATTACAATCACCATTTTTTACAAAT
CATCCATTACCATTTAAACCAGAGAATATGCCAGGTTATCAACCAATTCATGTTTTGGAA
GCAGTTCAAAAGAGAGTTCAACAACAACAAGAATTGGAACAACA----------
Length of 5' end seq. 584
3' end seq. ID SFB208Z
3' end seq. 
>SFB208Z.Seq
----------AAACAAAGACAAGAACAAGAAAGATTAAGATTAATTCAACAAGAACAAGA
AAGATTAAAAAGACANCAACAAGAACATGAACAAAGATTACAAAGAGAACAACAACAACA
ATTAAATCAACTACAACAACAAAAAGAATCACCTTTAAATAATAGTTATGGTAAAATTAA
TTTAAAGAGATCTTTAGATTTAGTTAATGATATTAGAAATTATTGTACAAGTGAAACTGA
AAGTGAATATGAAAGTGATGAAGAGGACTTTTATACTGAAGAAGAAGTTGAAGATTATTC
AAGTGATGAAGAAGATGATTATTATAATGCTCAATCAAATAAATCACTTTATACTCCAAT
TAAAGCAATGATTCAACAACATAATAATAATCAACAACATCAACAACAATATCCATATAG
TCAACAACAACAAGAACCAATTTCATCAAATCCATTTTTACAACCACCAAAGAAACAAAG
AACTGCATCAACAGGTTTCAATAATAACAATGGTAATAATAATAATAACAATAATTTATC
AACTCCACTCACTATTCATTAAGTTTTTTATAGTCGGTGATAGTATGAATACTTTATTGT
TTTAATCATCACACACATCAATTTCTCTTTTTTTTCTCCAAAAATATATTCTTAATCATG
TCCGATNCTTTNACCAAT
Length of 3' end seq. 668
Connected seq. ID SFB208P
Connected seq. 
>SFB208P.Seq
ATAGCTGCAAATTTACTTGTAAATAATAAAGGATCATTATTTATTGGTGATTTAGGTACA
GCAACATCATATACAAAAAGATCAGTATTTTCAAGTAAAGTTGTAACATTATGGTACAGA
GCACCAGAATTATTATTGGGATCAACTCAATATGGACCAGAAATTGATATGTGGTCAATT
GGTTGTGTTTTAATTGAATTAGTTACTTCACGTAACTTTTTACCAGGTAGTTCTGAACAA
CAACAGCTCGAGGCAATTTGTAAATTATGTGGTACACCAACTGATGAAATTTGGCCAAAC
GTTTCTCAATTACAAAACTTTAATCAAATTTCACATTTACCAGTTTATCCAAGTAGATTA
AGAACTGTTTTTAAAAACTTTTCAAATGATTTTATAGAATTATTAGAAGGTTTATTAACA
TTAAATCCAAAGAAAAGATTAACAGCTGAACAAGCATTACAATCACCATTTTTTACAAAT
CATCCATTACCATTTAAACCAGAGAATATGCCAGGTTATCAACCAATTCATGTTTTGGAA
GCAGTTCAAAAGAGAGTTCAACAACAACAAGAATTGGAACAACA----------AAACAA
AGACAAGAACAAGAAAGATTAAGATTAATTCAACAAGAACAAGAAAGATTAAAAAGACAN
CAACAAGAACATGAACAAAGATTACAAAGAGAACAACAACAACAATTAAATCAACTACAA
CAACAAAAAGAATCACCTTTAAATAATAGTTATGGTAAAATTAATTTAAAGAGATCTTTA
GATTTAGTTAATGATATTAGAAATTATTGTACAAGTGAAACTGAAAGTGAATATGAAAGT
GATGAAGAGGACTTTTATACTGAAGAAGAAGTTGAAGATTATTCAAGTGATGAAGAAGAT
GATTATTATAATGCTCAATCAAATAAATCACTTTATACTCCAATTAAAGCAATGATTCAA
CAACATAATAATAATCAACAACATCAACAACAATATCCATATAGTCAACAACAACAAGAA
CCAATTTCATCAAATCCATTTTTACAACCACCAAAGAAACAAAGAACTGCATCAACAGGT
TTCAATAATAACAATGGTAATAATAATAATAACAATAATTTATCAACTCCACTCACTATT
CATTAAGTTTTTTATAGTCGGTGATAGTATGAATACTTTATTGTTTTAATCATCACACAC
ATCAATTTCTCTTTTTTTTCTCCAAAAATATATTCTTAATCATGTCCGATNCTTTNACCA
AT
Length of connected seq. 1252
Full length Seq ID -
Full length Seq. -
Length of full length seq. -