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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB185
Library SF
(Link to library)
Clone ID SFB185
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09097-1|Contig-U15574-1
Original site URL
Representative seq. ID SFB185P
(Link to Original site)
Representative DNA sequence 
>SFB185 (SFB185Q) /CSM/SF/SFB1-D/SFB185Q.Seq.d/
ATTAAATTTATATTTATATAAATCCTAAATTAATAATAATAATAAAAAAAATAAAAAAAA
CTCGATCAGTTGGTTTGTTCGCATCATTATTTTATTTTTTTTCCAAAAAAAAATATAAAA
AAAAAAXXXXXXXXXXGCTNNTCATCAAGNTCAAGCAGCTNAAGCTGTTCATCAAGTTCA
AGTAGCTCATCTAGTNCNAGCTCTTCATCAAGNTCAAGCTCCTCAAGCTCAAGCAGTTCA
TCAAGCTCNTCAAGCTNAAGCAGTTCATCAAGCNGTTNTTCAAGCTCCTCNNGCTCAAGC
AGTTCATCAAGCTCCTCAAGCTCAAGCTNTTCATCAAGCTCAAGCTCAAGCTCAAGCTCC
TCATCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
*IYIYINPKLIIIIKKIKKTRSVGLFASLFYFFSKKKYKKK---

---AXHQXQAAXAVHQVQVAHLVXALHQXQAPQAQAVHQAXQAXAVHQAVXQAPXAQAVH
QAPQAQAXHQAQAQAQAPH
Translated Amino Acid sequence (All Frames) 
Frame A:
ikfifi*iln*****kk*kkldqlvcshhyfiffpkknikkk---

---AXHQXQAAXAVHQVQVAHLVXALHQXQAPQAQAVHQAXQAXAVHQAVXQAPXAQAVH
QAPQAQAXHQAQAQAQAPH

Frame B:
lnlylyks*innnnkknkknsiswfvriiilfffqkki*kk---

---lxikxkqlklfikfk*li*xxlfikxkllklkqfiklxklkqfikxxfkllxlkqfi
kllklklfiklklklklli

Frame C:
*IYIYINPKLIIIIKKIKKTRSVGLFASLFYFFSKKKYKKK---

---xssxsssxscsssssssssxssssxssssssssssssssxsssssxxssssxsssss
ssssssxssssssssssss
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFB185 (SFB185Q) /CSM/SF/SFB1-D/SFB185Q.Seq.d/                        228   5e-59
SFL362 (SFL362Q) /CSM/SF/SFL3-C/SFL362Q.Seq.d/                        214   7e-55
AFN202 (AFN202Q) /CSM/AF/AFN2-A/AFN202Q.Seq.d/                        208   4e-53
CFI751 (CFI751Q) /CSM/CF/CFI7-C/CFI751Q.Seq.d/                        109   3e-23
SFF870 (SFF870Q) /CSM/SF/SFF8-C/SFF870Q.Seq.d/                         88   1e-16
SFB280 (SFB280Q) /CSM/SF/SFB2-D/SFB280Q.Seq.d/                         88   1e-16
CHP686 (CHP686Q) /CSM/CH/CHP6-D/CHP686Q.Seq.d/                         88   1e-16
CFE269 (CFE269Q) /CSM/CF/CFE2-C/CFE269Q.Seq.d/                         88   1e-16
CFD526 (CFD526Q) /CSM/CF/CFD5-B/CFD526Q.Seq.d/                         88   1e-16
AFO726 (AFO726Q) /CSM/AF/AFO7-B/AFO726Q.Seq.d/                         88   1e-16
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   214   1e-87  10
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   7e-07  6
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    36   2e-06  8
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36   3e-06  7
AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.    36   6e-06  6
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    40   7e-06  6
AY048187|AY048187.1 Bombyx mori strain Xiafang mitochondrion, complete genome.    36   2e-05  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   2e-05  6
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    36   2e-05  7
V00695|V00695.1 Yeast mitochondrial tRNA genes (several, map positions 3.5 to 8.6) encoding tRNAs for Lys, Arg, Gly, Asp, Ser, Arg, and Ala.    34   6e-05  4
dna update 2003.12.16
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 78,891,682
protein update 2009. 5.22
PSORT 

 psg: 0.76  gvh: 0.39  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SFB185 is mit
5' end seq. ID SFB185F
5' end seq. 
>SFB185F.Seq
ATTAAATTTATATTTATATAAATCCTAAATTAATAATAATAATAAAAAAAATAAAAAAAA
CTCGATCAGTTGGTTTGTTCGCATCATTATTTTATTTTTTTTCCAAAAAAAAATATAAAA
AAAAAA----------
Length of 5' end seq. 126
3' end seq. ID SFB185Z
3' end seq. 
>SFB185Z.Seq
----------GCTNNTCATCAAGNTCAAGCAGCTNAAGCTGTTCATCAAGTTCAAGTAGC
TCATCTAGTNCNAGCTCTTCATCAAGNTCAAGCTCCTCAAGCTCAAGCAGTTCATCAAGC
TCNTCAAGCTNAAGCAGTTCATCAAGCNGTTNTTCAAGCTCCTCNNGCTCAAGCAGTTCA
TCAAGCTCCTCAAGCTCAAGCTNTTCATCAAGCTCAAGCTCAAGCTCAAGCTCCTCATCA
Length of 3' end seq. 230
Connected seq. ID SFB185P
Connected seq. 
>SFB185P.Seq
ATTAAATTTATATTTATATAAATCCTAAATTAATAATAATAATAAAAAAAATAAAAAAAA
CTCGATCAGTTGGTTTGTTCGCATCATTATTTTATTTTTTTTCCAAAAAAAAATATAAAA
AAAAAA----------GCTNNTCATCAAGNTCAAGCAGCTNAAGCTGTTCATCAAGTTCA
AGTAGCTCATCTAGTNCNAGCTCTTCATCAAGNTCAAGCTCCTCAAGCTCAAGCAGTTCA
TCAAGCTCNTCAAGCTNAAGCAGTTCATCAAGCNGTTNTTCAAGCTCCTCNNGCTCAAGC
AGTTCATCAAGCTCCTCAAGCTCAAGCTNTTCATCAAGCTCAAGCTCAAGCTCAAGCTCC
TCATCA
Length of connected seq. 356
Full length Seq ID -
Full length Seq. -
Length of full length seq. -