SFB181 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFB181
Library	SF (Link to library)
Clone ID	SFB181 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15240-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFB1-D/SFB181Q.Seq.d/
Representative seq. ID	SFB181P (Link to Original site)
Representative DNA sequence	>SFB181 (SFB181Q) /CSM/SF/SFB1-D/SFB181Q.Seq.d/ ACTGTTGGCCTACTGGGAATAATTCAGATTTTAATAATAATGAATCAAAAACCAAATTAT TAAAATCATTAAAGAATGAAATTGTTGAAGTTAAACTCCAACAACAACAACAAAGAGAAG GTATTGAACGTATTGATTCATTAATTAAACAAATTGATCAATTATTAAAACAACATAGTG GAACACTAGCAGAAGAGAAACAAACAAGAAACAAGTTAACACAATGGATTCGTGATAATA TCGGACCTGATTTATCAGTGATTGACCAACATATTGAAGATAAACATATAGTTGGAGTAG AGGATAAATTGAAACAACTCTACCAAATTATGGATAAAAAAATCAGAGAATCTGAAGAAA ACAATGAGCGTAGATCAAGCTCATTGAATGAATTTATGAAATTAAATCAAGAGGCATCGA AATCGACATCCAACAATCTCAATGATCTAATTCAATCGAATCATCAATTGTATATGAATA AATTTAGAGATGTTTCAAGTGAAATCGATGAAAAGGTTAGTTTAACCGACCAAAGATTAA AATCCACTGAAATGTCATTGGATAAGAAATTCTCACAATCTATAAACTCATTAGACCAAC GTATTCNNTCAAGTGAGAATXXXXXXXXXXTCACAATCTATAAACTCATTAGACCAACGT ATTCGTTCAAGTGAGAATATAATTGAACAAAAGATCATATCGAATTACTCATCGTTGGAA TCACAATTAAGCATCACAGAGAACAATCTCGACAAGAAGTTAACCTCATCAATGAGCACA TTTGATCAAAGATTATCCAATATTAACAACCAATTAGATGGAAAGATCAATAATGGTAAT CAACAAATCTCATCACGTTTAGATTCATCAGTTACAAAGTTATTACAAACCGTTGACCAA TATTCAAAAGATATTAAATCCGAATTCAATTCAATCAATGAGAAAGAGCAACAACGTGTA ACTCGTATATTCGATAAACTGGTGAACGATTTATCAAGTTCAACCCAAACATTTGATGAA TCAATAAAGAAATTAAATGTACAATTCGAGCAATCCCTAAACAAAGAAAGAGAAAAAGAA GAAAAAAAGAGAAAACAACAACAATTGGCTCAATTAGAAAAAGAAGAAAGAGAAAGAAAT GAAAAACTTGAAAAAGATAGACAATTACAATTAGAACAAGAAATNAAAAAGAAAGAAAAT TAAAACAACAACAAAAGAAAAAGAACAAAAAGAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	CWPTGNNSDFNNNESKTKLLKSLKNEIVEVKLQQQQQREGIERIDSLIKQIDQLLKQHSG TLAEEKQTRNKLTQWIRDNIGPDLSVIDQHIEDKHIVGVEDKLKQLYQIMDKKIRESEEN NERRSSSLNEFMKLNQEASKSTSNNLNDLIQSNHQLYMNKFRDVSSEIDEKVSLTDQRLK STEMSLDKKFSQSINSLDQRIXSSEN--- ---SQSINSLDQRIRSSENIIEQKIISNYSSLESQLSITENNLDKKLTSSMSTFDQRLSN INNQLDGKINNGNQQISSRLDSSVTKLLQTVDQYSKDIKSEFNSINEKEQQRVTRIFDKL VNDLSSSTQTFDESIKKLNVQFEQSLNKEREKEEKKRKQQQLAQLEKEERERNEKLEKDR QLQLEQEXKKKEN*nnnkrkrtkr
Translated Amino Acid sequence (All Frames)	Frame A: tvgllgiiqiliimnqkpnynhrmkllklnsnnnnkekvlnvlihlnklinynniv ehqkrnkqetshngfviisdliyqltnilkinilerinnnstklwikksenlkk tmsvdqahmnlnikrhrnrhptismifnriinciinlemfqvksmkrlvptkd* nplkchwirnshnlthtnvfxqvr--- ---SQSINSLDQRIRSSENIIEQKIISNYSSLESQLSITENNLDKKLTSSMSTFDQRLSN INNQLDGKINNGNQQISSRLDSSVTKLLQTVDQYSKDIKSEFNSINEKEQQRVTRIFDKL VNDLSSSTQTFDESIKKLNVQFEQSLNKEREKEEKKRKQQQLAQLEKEERERNEKLEKDR QLQLEQEXKKKENnnnkrkrtkr Frame B: llaywefrf***iknqiikiikencstpttttkrrytyfintnsiikttw ntsrretnkkqvntmdsyrtfisdptyrtyswsrgiettlpnygknqrirk qaiklieiyeiksrgieidiqqsqsnsiessivyeircfknrkgfnrpkik ihnvigeiltiyklirptysxke--- ---hnlthtnvfvqvrilnkrsyrithrwnhnasqrtistrsphqahlikdypi lttnmersimvinkshhvihqlqsyykpltniqkilnpnsiqsmrksnnvlvysinw tiyqvqpkhlmnqrnmynssnptkkekkkkkrennnnwlnkkkkekemknlkkid nynnkkxkrkkiktttkekeqke Frame C: CWPTGNNSDFNNNESKTKLLKSLKNEIVEVKLQQQQQREGIERIDSLIKQIDQLLKQHSG TLAEEKQTRNKLTQWIRDNIGPDLSVIDQHIEDKHIVGVEDKLKQLYQIMDKKIRESEEN NERRSSSLNEFMKLNQEASKSTSNNLNDLIQSNHQLYMNKFRDVSSEIDEKVSLTDQRLK STEMSLDKKFSQSINSLDQRIXSSEN--- ---tiyklirptysfkeyntkdhiellivgitikhhreqsrqevnlinehiskiiqy qpirwkdqwstnlitfrfisykvitnrpifkryiriqfnqerattcnsyirtg erfikfnpniinkeikctiraipkqrkrkrrkkektttigsirkrrkrkkktkrt itirtrnxkerklkqqqkkknkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFB181 (SFB181Q) /CSM/SF/SFB1-D/SFB181Q.Seq.d/ 1992 0.0 VHH439 (VHH439Q) /CSM/VH/VHH4-B/VHH439Q.Seq.d/ 856 0.0 VHF232 (VHF232Q) /CSM/VH/VHF2-B/VHF232Q.Seq.d/ 856 0.0 VFJ791 (VFJ791Q) /CSM/VF/VFJ7-D/VFJ791Q.Seq.d/ 539 e-152 CHP360 (CHP360Q) /CSM/CH/CHP3-C/CHP360Q.Seq.d/ 48 3e-04 SHK403 (SHK403Q) /CSM/SH/SHK4-A/SHK403Q.Seq.d/ 42 0.020 SHJ755 (SHJ755Q) /CSM/SH/SHJ7-C/SHJ755Q.Seq.d/ 42 0.020 SHJ508 (SHJ508Q) /CSM/SH/SHJ5-A/SHJ508Q.Seq.d/ 42 0.020 SHE708 (SHE708Q) /CSM/SH/SHE7-A/SHE708Q.Seq.d/ 42 0.020 SHB632 (SHB632Q) /CSM/SH/SHB6-B/SHB632Q.Seq.d/ 42 0.020
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 38 2e-09 17 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 3e-07 15 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 4e-07 14 AC102363\|AC102363.11 Mus musculus chromosome 1 clone RP23-76B18 map 1, * SEQUENCING IN PROGRESS *, 5 unordered pieces. 36 2e-06 12 AC102866\|AC102866.2 Mus musculus clone RP24-576L9, WORKING DRAFT SEQUENCE, 12 unordered pieces. 38 2e-06 12 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 3e-06 12 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 7e-06 13 AC116920\|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 38 2e-05 12 AC102437\|AC102437.5 Mus musculus, clone RP24-132C7, complete sequence. 36 4e-05 9 AC145570\|AC145570.2 Mus musculus chromosome UNK clone RP24-95K23, WORKING DRAFT SEQUENCE, 6 unordered pieces. 36 4e-05 8
dna update	2003.12.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF128452_1(AF128452\|pid:none) Borrelia turicatae plasmid-encoded... 60 1e-07 AF128451_1(AF128451\|pid:none) Borrelia turicatae plasmid-encoded... 60 1e-07 AF128446_1(AF128446\|pid:none) Borrelia turicatae plasmid-encoded... 60 2e-07 AF128445_1(AF128445\|pid:none) Borrelia turicatae plasmid-encoded... 59 3e-07 CP000978_7(CP000978\|pid:none) Borrelia duttonii Ly plasmid pl15,... 59 3e-07 (Q54G05) RecName: Full=Putative leucine-rich repeat-containing p... 55 4e-06 AF143474_1(AF143474\|pid:none) Borrelia hermsii strain Yor-1 BdrA... 55 6e-06 CP000976_495(CP000976\|pid:none) Borrelia duttonii Ly, complete g... 52 5e-05 CP000990_24(CP000990\|pid:none) Borrelia duttonii Ly plasmid pl70... 52 5e-05 AP009552_3746(AP009552\|pid:none) Microcystis aeruginosa NIES-843... 51 9e-05
protein update	2009. 5.22
PSORT	psg: 0.75 gvh: 0.14 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.10 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 40.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for SFB181 is nuc
5' end seq. ID	SFB181F
5' end seq.	>SFB181F.Seq ACTGTTGGCCTACTGGGAATAATTCAGATTTTAATAATAATGAATCAAAAACCAAATTAT TAAAATCATTAAAGAATGAAATTGTTGAAGTTAAACTCCAACAACAACAACAAAGAGAAG GTATTGAACGTATTGATTCATTAATTAAACAAATTGATCAATTATTAAAACAACATAGTG GAACACTAGCAGAAGAGAAACAAACAAGAAACAAGTTAACACAATGGATTCGTGATAATA TCGGACCTGATTTATCAGTGATTGACCAACATATTGAAGATAAACATATAGTTGGAGTAG AGGATAAATTGAAACAACTCTACCAAATTATGGATAAAAAAATCAGAGAATCTGAAGAAA ACAATGAGCGTAGATCAAGCTCATTGAATGAATTTATGAAATTAAATCAAGAGGCATCGA AATCGACATCCAACAATCTCAATGATCTAATTCAATCGAATCATCAATTGTATATGAATA AATTTAGAGATGTTTCAAGTGAAATCGATGAAAAGGTTAGTTTAACCGACCAAAGATTAA AATCCACTGAAATGTCATTGGATAAGAAATTCTCACAATCTATAAACTCATTAGACCAAC GTATTCNNTCAAGTGAGAAT----------
Length of 5' end seq.	620
3' end seq. ID	SFB181Z
3' end seq.	>SFB181Z.Seq ----------TCACAATCTATAAACTCATTAGACCAACGTATTCGTTCAAGTGAGAATAT AATTGAACAAAAGATCATATCGAATTACTCATCGTTGGAATCACAATTAAGCATCACAGA GAACAATCTCGACAAGAAGTTAACCTCATCAATGAGCACATTTGATCAAAGATTATCCAA TATTAACAACCAATTAGATGGAAAGATCAATAATGGTAATCAACAAATCTCATCACGTTT AGATTCATCAGTTACAAAGTTATTACAAACCGTTGACCAATATTCAAAAGATATTAAATC CGAATTCAATTCAATCAATGAGAAAGAGCAACAACGTGTAACTCGTATATTCGATAAACT GGTGAACGATTTATCAAGTTCAACCCAAACATTTGATGAATCAATAAAGAAATTAAATGT ACAATTCGAGCAATCCCTAAACAAAGAAAGAGAAAAAGAAGAAAAAAAGAGAAAACAACA ACAATTGGCTCAATTAGAAAAAGAAGAAAGAGAAAGAAATGAAAAACTTGAAAAAGATAG ACAATTACAATTAGAACAAGAAATNAAAAAGAAAGAAAATTAAAACAACAACAAAAGAAA AAGAACAAAAAGAA
Length of 3' end seq.	604
Connected seq. ID	SFB181P
Connected seq.	>SFB181P.Seq ACTGTTGGCCTACTGGGAATAATTCAGATTTTAATAATAATGAATCAAAAACCAAATTAT TAAAATCATTAAAGAATGAAATTGTTGAAGTTAAACTCCAACAACAACAACAAAGAGAAG GTATTGAACGTATTGATTCATTAATTAAACAAATTGATCAATTATTAAAACAACATAGTG GAACACTAGCAGAAGAGAAACAAACAAGAAACAAGTTAACACAATGGATTCGTGATAATA TCGGACCTGATTTATCAGTGATTGACCAACATATTGAAGATAAACATATAGTTGGAGTAG AGGATAAATTGAAACAACTCTACCAAATTATGGATAAAAAAATCAGAGAATCTGAAGAAA ACAATGAGCGTAGATCAAGCTCATTGAATGAATTTATGAAATTAAATCAAGAGGCATCGA AATCGACATCCAACAATCTCAATGATCTAATTCAATCGAATCATCAATTGTATATGAATA AATTTAGAGATGTTTCAAGTGAAATCGATGAAAAGGTTAGTTTAACCGACCAAAGATTAA AATCCACTGAAATGTCATTGGATAAGAAATTCTCACAATCTATAAACTCATTAGACCAAC GTATTCNNTCAAGTGAGAAT----------TCACAATCTATAAACTCATTAGACCAACGT ATTCGTTCAAGTGAGAATATAATTGAACAAAAGATCATATCGAATTACTCATCGTTGGAA TCACAATTAAGCATCACAGAGAACAATCTCGACAAGAAGTTAACCTCATCAATGAGCACA TTTGATCAAAGATTATCCAATATTAACAACCAATTAGATGGAAAGATCAATAATGGTAAT CAACAAATCTCATCACGTTTAGATTCATCAGTTACAAAGTTATTACAAACCGTTGACCAA TATTCAAAAGATATTAAATCCGAATTCAATTCAATCAATGAGAAAGAGCAACAACGTGTA ACTCGTATATTCGATAAACTGGTGAACGATTTATCAAGTTCAACCCAAACATTTGATGAA TCAATAAAGAAATTAAATGTACAATTCGAGCAATCCCTAAACAAAGAAAGAGAAAAAGAA GAAAAAAAGAGAAAACAACAACAATTGGCTCAATTAGAAAAAGAAGAAAGAGAAAGAAAT GAAAAACTTGAAAAAGATAGACAATTACAATTAGAACAAGAAATNAAAAAGAAAGAAAAT TAAAACAACAACAAAAGAAAAAGAACAAAAAGAA
Length of connected seq.	1224
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas