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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB134
Library SF
(Link to library)
Clone ID SFB134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID SFB134P
(Link to Original site)
Representative DNA sequence 
>SFB134 (SFB134Q) /CSM/SF/SFB1-B/SFB134Q.Seq.d/
AAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGTATTCATAT
TAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAATTTACAAC
CAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGA
ACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATTATCAGACT
ATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGCACCACAAC
AAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACAACGTCAAC
CACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAACAATCCTG
AAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAG
ATATGAAATTCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTATTCAAGAAT
TGGCATTAAAAGATCCATATGGTGAAGAGTATCAAAAXXXXXXXXXXCAACTTCAACCCA
CTACCACTACCACTACCACTACTTCACCCCAAACTCCAACTAATGCCACTTCTCCTGTAA
ATAATAATAATAATAATAATAACAACAACAACAACACTAGACCTCCAATTAATTCACCAC
CAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACAAATCAATATGCTTCTGAAT
CCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCAATTAGACTTTTAA
CTCAAGCTAAAGGCAATGTNG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTILVN
NQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQRQP
QRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRIQEL
ALKDPYGEEYQ---

---QLQPTTTTTTTTSPQTPTNATSPVNNNNNNNNNNNNTRPPINSPPVAKTPQPTPQPT
TNQYASESNIQTLIGLGCSRDKAIRLLTQAKGNV
Translated Amino Acid sequence (All Frames) 
Frame A:
khtnt*iifiylsthpkysy*wqk*qyqlkmkisfk*iynqikqlki*nve*nlkpqf**
tikf*hlmeky*imkrnyqtiqlkvvisy**qkmf*ehhnkdhnnpnnhnnhnnhnnnvn
hkeilsihhkif*ttlqtilkt*lkl*iqiqh*qmqs*vki*nslltl*nksknnvvfkn
wh*kihmvksik---

---QLQPTTTTTTTTSPQTPTNATSPVNNNNNNNNNNNNTRPPINSPPVAKTPQPTPQPT
TNQYASESNIQTLIGLGCSRDKAIRLLTQAKGNV

Frame B:
ntlthk*ylsiyphtqsihingrnnnin*k*kfhsskfttrsns*rskt*sri*nhnfse
qssfnt*wksir**keiirlfn*rw*flidnkkcfkstttkitttpttttttttttttst
tkrssqfttryfrplykqs*rlnssykfkssiskcnlk*ryeipyslcrtnqrttsysri
gikrsiw*rvsk---

---nfnplplplpllhpklqlmplll*iiiiiiitttttldlqlihhqlqrhrnqhhnql
qinmllnpiskplldlvvqeirqldf*lklkamx

Frame C:
th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTILVN
NQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQRQP
QRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRIQEL
ALKDPYGEEYQ---

---tsthyhyhyhyftpnsn*chfsck*******qqqqh*tsn*fttsckdtatntttny
ksicf*iqypnpywtwlfkr*gn*tfnss*rqc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE249 (VFE249Q) /CSM/VF/VFE2-C/VFE249Q.Seq.d/                        577   e-163
VFE196 (VFE196Q) /CSM/VF/VFE1-D/VFE196Q.Seq.d/                        577   e-163
SFL472 (SFL472Q) /CSM/SF/SFL4-C/SFL472Q.Seq.d/                        577   e-163
SFL211 (SFL211Q) /CSM/SF/SFL2-A/SFL211Q.Seq.d/                        577   e-163
SFK703 (SFK703Q) /CSM/SF/SFK7-A/SFK703Q.Seq.d/                        577   e-163
SFJ734 (SFJ734Q) /CSM/SF/SFJ7-B/SFJ734Q.Seq.d/                        577   e-163
SFJ357 (SFJ357Q) /CSM/SF/SFJ3-C/SFJ357Q.Seq.d/                        577   e-163
SFG344 (SFG344Q) /CSM/SF/SFG3-B/SFG344Q.Seq.d/                        577   e-163
SFF829 (SFF829Q) /CSM/SF/SFF8-B/SFF829Q.Seq.d/                        577   e-163
SFF802 (SFF802Q) /CSM/SF/SFF8-A/SFF802Q.Seq.d/                        577   e-163
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    50   2e-08  16
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    48   7e-08  9
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   1e-07  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    52   2e-06  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    50   7e-06  9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   2e-05  14
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    48   5e-05  9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    50   6e-05  12
AF024654|AF024654.1 Dictyostelium discoideum hybrid histidine kinase DHKB (dhkB) gene, complete cds.    50   1e-04  3
AC119130|AC119130.3 Rattus norvegicus clone CH230-414I23, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    52   2e-04  8
dna update 2003.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog;                          279   7e-74
AK067974_1(AK067974|pid:none) Oryza sativa Japonica Group cDNA c...    64   8e-09
CR940348_825(CR940348|pid:none) Theileria annulata strain Ankara...    48   5e-04
BT058466_1(BT058466|pid:none) Salmo salar clone Contig1073 UV ex...    46   0.002
AY085083_1(AY085083|pid:none) Arabidopsis thaliana clone 12734 m...    45   0.002
DQ683059_1(DQ683059|pid:none) Synthetic construct DDI1 (DDI1) ge...    45   0.002
BC055645_1(BC055645|pid:none) Danio rerio neural precursor cell ...    43   0.011
BT073010_1(BT073010|pid:none) Oncorhynchus mykiss clone omyk-evn...    43   0.011
BC078600_1(BC078600|pid:none) Xenopus laevis hypothetical protei...    43   0.011
BT075193_1(BT075193|pid:none) Osmerus mordax clone omor-eva-507-...    43   0.011
protein update 2009. 5.22
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SFB134 is cyt
5' end seq. ID SFB134F
5' end seq. 
>SFB134F.Seq
AAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGTATTCATAT
TAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAATTTACAAC
CAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGA
ACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATTATCAGACT
ATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGCACCACAAC
AAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACAACGTCAAC
CACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAACAATCCTG
AAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAG
ATATGAAATTCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTATTCAAGAAT
TGGCATTAAAAGATCCATATGGTGAAGAGTATCAAAA----------
Length of 5' end seq. 577
3' end seq. ID SFB134Z
3' end seq. 
>SFB134Z.Seq
----------CAACTTCAACCCACTACCACTACCACTACCACTACTTCACCCCAAACTCC
AACTAATGCCACTTCTCCTGTAAATAATAATAATAATAATAATAACAACAACAACAACAC
TAGACCTCCAATTAATTCACCACCAGTTGCAAAGACACCGCAACCAACACCACAACCAAC
TACAAATCAATATGCTTCTGAATCCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAG
AGATAAGGCAATTAGACTTTTAACTCAAGCTAAAGGCAATGTNG
Length of 3' end seq. 274
Connected seq. ID SFB134P
Connected seq. 
>SFB134P.Seq
AAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGTATTCATAT
TAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAATTTACAAC
CAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGA
ACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATTATCAGACT
ATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGCACCACAAC
AAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACAACGTCAAC
CACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAACAATCCTG
AAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAG
ATATGAAATTCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTATTCAAGAAT
TGGCATTAAAAGATCCATATGGTGAAGAGTATCAAAA----------CAACTTCAACCCA
CTACCACTACCACTACCACTACTTCACCCCAAACTCCAACTAATGCCACTTCTCCTGTAA
ATAATAATAATAATAATAATAACAACAACAACAACACTAGACCTCCAATTAATTCACCAC
CAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACAAATCAATATGCTTCTGAAT
CCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCAATTAGACTTTTAA
CTCAAGCTAAAGGCAATGTNG
Length of connected seq. 851
Full length Seq ID -
Full length Seq. -
Length of full length seq. -