SFB130
Library SF
(Link to library)
Clone ID SFB130
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID SFB130Z
(Link to Original site)
Representative DNA sequence
>SFB130 (SFB130Q) /CSM/SF/SFB1-B/SFB130Q.Seq.d/
XXXXXXXXXXGGAATACAAATAATATTTGGGGTTAATTTGAAATCAGTTTCAAATTTAAT
TAAAGAAGATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGAAAATCATAAAGC
AATGGTACAATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGC
AATTTTTGTACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGC
ACAATCAAATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGG
TCAAGATGTACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAA
GAGATTTAAATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGT
TTACTTTGGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGA
ACGTGTTGATATTCCAGATGGTGTGGTTTTAGAAAATAAAGTACTTTCTGGCACTCTTAG
AATTTNGATCATTAAATTCTACTCAAAAAATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---IQIIFGVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMVQLETPAGMGIQNFKNSVAI
FVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKR
FKSIPDLLELDHLTVSGDVYFGSRITLKGTVIIVANHGERVDIPDGVVLENKVLSGTLRI
XIIKFYSKN


Translated Amino Acid sequence (All Frames)
Frame A:
---eyk*ylgli*nqfqi*lkkin*i*iglliihlkiikqwyn*khqqvwvfkilriqlq
flyhvidivqlnqqvnywlhnqifsnlimvkln*iqrekvkmyhllnwvknfqqfqimkr
dlnqfqiywnwiillflvmftlvqelllkvqsll*limvnvlifqmvwf*kikyflalle
fxslnstqki


Frame B:
---ntnniwg*feisfkfn*rr*irfrldc*lst*ks*sngtirntsrygyskf*efscn
fctt**issn*inksiigctikyfpi*swss*ikfkerrsrcttc*ig*rifnsfrl*ke
i*insrfigigssycfw*cllwfknys*ryshycs*sw*tc*ysrwcgfrk*stfwhs*n
xdh*illkkl


Frame C:
---IQIIFGVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMVQLETPAGMGIQNFKNSVAI
FVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKR
FKSIPDLLELDHLTVSGDVYFGSRITLKGTVIIVANHGERVDIPDGVVLENKVLSGTLRI
XIIKFYSKN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFB130 (SFB130Q) /CSM/SF/SFB1-B/SFB130Q.Seq.d/ 1110 0.0
SFK693 (SFK693Q) /CSM/SF/SFK6-D/SFK693Q.Seq.d/ 1094 0.0
SFH134 (SFH134Q) /CSM/SF/SFH1-B/SFH134Q.Seq.d/ 1094 0.0
SFG430 (SFG430Q) /CSM/SF/SFG4-B/SFG430Q.Seq.d/ 1094 0.0
SFF616 (SFF616Q) /CSM/SF/SFF6-A/SFF616Q.Seq.d/ 1094 0.0
SFF557 (SFF557Q) /CSM/SF/SFF5-C/SFF557Q.Seq.d/ 1094 0.0
SFE654 (SFE654Q) /CSM/SF/SFE6-C/SFE654Q.Seq.d/ 1094 0.0
CFK233 (CFK233Q) /CSM/CF/CFK2-B/CFK233Q.Seq.d/ 1094 0.0
CFK193 (CFK193Q) /CSM/CF/CFK1-D/CFK193Q.Seq.d/ 1094 0.0
CFJ629 (CFJ629Q) /CSM/CF/CFJ6-B/CFJ629Q.Seq.d/ 1094 0.0

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP; EC 2.7.7.9). 876 0.0 4
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds. 50 3e-05 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 4e-04 16
BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.002 2
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 32 0.010 13
BI743473|BI743473.1 kx44f12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.027 2
AX348530|AX348530.1 Sequence 38 from Patent WO0202809. 50 0.034 1
AX251102|AX251102.1 Sequence 70 from Patent WO0168912. 36 0.068 3
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 32 0.069 9
BI742772|BI742772.1 kx34h07.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.10 2
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 338 6e-92
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 186 4e-46
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 186 4e-46
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet... 186 4e-46
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro... 186 4e-46
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 186 4e-46
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp... 186 5e-46
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 186 5e-46
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus... 186 5e-46
CR860388_1(CR860388|pid:none) Pongo abelii mRNA; cDNA DKFZp459A0... 185 6e-46
protein update 2009. 5.22
PSORT

psg: 0.63 gvh: 0.38 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SFB130 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFB130Z
3' end seq.
>SFB130Z.Seq
----------GGAATACAAATAATATTTGGGGTTAATTTGAAATCAGTTTCAAATTTAAT
TAAAGAAGATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGAAAATCATAAAGC
AATGGTACAATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGC
AATTTTTGTACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGC
ACAATCAAATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGG
TCAAGATGTACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAA
GAGATTTAAATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGT
TTACTTTGGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGA
ACGTGTTGATATTCCAGATGGTGTGGTTTTAGAAAATAAAGTACTTTCTGGCACTCTTAG
AATTTNGATCATTAAATTCTACTCAAAAAATTA
Length of 3' end seq. 563
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -