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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB124
Library SF
(Link to library)
Clone ID SFB124
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SFB124P
(Link to Original site)
Representative DNA sequence 
>SFB124 (SFB124Q) /CSM/SF/SFB1-A/SFB124Q.Seq.d/
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAGATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATG
GAAAGGTXXXXXXXXXXTGTTTTAGTAGGTCCNCTCCNCACCCAAAGCGCTGTTAAANAA
TTCNCTGAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAAT
AAACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGAT
GCTCCAATNGTAAAGACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAAT
NTTGACGATGCTTTTGCCTGGAANAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTC
NCAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATA
GTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAA
NAGACCGGAGGTGGTAAAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGN
ACTAANACNATCNACCTATGGTAATACTANGCCNTTATCCCAAGGNATCNATTTTAACTA
AAATTACCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQLWKG---

---VLVGPLXTQSAVKXFXEGXXXIKXQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPX
VKTELFVPIXYIMKFKNXDDAFAWXNEVPQGXSXSLFXNNQXNIFKWLGPTGSDCGIVNV
NXATNGAEIGGAXGGEKXTGGGKESGSDSWKQYCRRXTXTIXLW*yxaxiprxxf*lklp
kkktkcnlhninkril
Translated Amino Acid sequence (All Frames) 
Frame A:
tsqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*dhqmfksnk**sy
cnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng
*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfp
mcrtwleccnlndlr*rpimer---

---cfsrsxphpkrc*xix*rxxxnkkxrw*grhww**trxqwwklc*tnrrch*t*csn
xkd*txcsnxxhneiqkx*rcfclex*spxrxxxfpxxkqskxylqmawtxri*lwxs*r
kxsyxrc*nwwxxwr*kxdrrw*riwlrqletvlps*x*xxxpmvilxxypkxsiltkit
xkknqm*lt*hk*kni

Frame B:
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQLWKG---

---VLVGPLXTQSAVKXFXEGXXXIKXQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPX
VKTELFVPIXYIMKFKNXDDAFAWXNEVPQGXSXSLFXNNQXNIFKWLGPTGSDCGIVNV
NXATNGAEIGGAXGGEKXTGGGKESGSDSWKQYCRRXTXTIXLW*yxaxiprxxf*lklp
kkktkcnlhninkril

Frame C:
ftknif**nr*ikk*lpltnihswln*alklkimmessmengevlvrssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*favtsnygk---

---f**vxsxpkallxnslkvxxk*kxkvvrsslvvinsxsvvetllnqpslplnmmlqx
*rlnxlfqxxt**nskxltmllpgxmksxkvxhxpxsqtikxissngldxpdltvx*lt*
mxlxtvlklvxplevkxrpevvknlaqtagnsiavvxlxxstygntxplsqgixfn*nyx
kkkpnvtyit*ikey
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFB124 (SFB124Q) /CSM/SF/SFB1-A/SFB124Q.Seq.d/                       1249   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1195   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1195   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1195   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1195   0.0
SFD744 (SFD744Q) /CSM/SF/SFD7-B/SFD744Q.Seq.d/                       1195   0.0
CFD640 (CFD640Q) /CSM/CF/CFD6-B/CFD640Q.Seq.d/                       1195   0.0
CFD614 (CFD614Q) /CSM/CF/CFD6-A/CFD614Q.Seq.d/                       1195   0.0
CFC564 (CFC564Q) /CSM/CF/CFC5-C/CFC564Q.Seq.d/                       1195   0.0
SFD261 (SFD261Q) /CSM/SF/SFD2-C/SFD261Q.Seq.d/                       1191   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   815   0.0    9
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   8e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   2e-07  3
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence.    44   1e-05  4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence.    52   2e-05  3
AJ615957|AJ615957.1 Triticum turgidum EST, clone 12415R.           52   5e-05  3
AJ614830|AJ614830.1 Triticum turgidum EST, clone 10801R.           52   7e-05  3
BQ806838|BQ806838.1 WHE3583_G06_M11ZS Wheat developing grains cDNA library Triticum aestivum cDNA clone WHE3583_G06_M11, mRNA sequence.    44   7e-05  4
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    52   8e-05  2
dna update 2003.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   387   e-106
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   242   2e-62
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   238   2e-61
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   238   4e-61
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   232   2e-59
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   232   2e-59
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   230   6e-59
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   230   6e-59
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   229   2e-58
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   228   2e-58
protein update 2009. 5.22
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFB124 is nuc
5' end seq. ID SFB124F
5' end seq. 
>SFB124F.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAGATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATG
GAAAGGT----------
Length of 5' end seq. 607
3' end seq. ID SFB124Z
3' end seq. 
>SFB124Z.Seq
----------TGTTTTAGTAGGTCCNCTCCNCACCCAAAGCGCTGTTAAANAATTCNCTG
AAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCG
ANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAA
TNGTAAAGACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACG
ATGCTTTTGCCTGGAANAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACA
ATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACG
TAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCG
GAGGTGGTAAAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANA
CNATCNACCTATGGTAATACTANGCCNTTATCCCAAGGNATCNATTTTAACTAAAATTAC
CNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTG
Length of 3' end seq. 580
Connected seq. ID SFB124P
Connected seq. 
>SFB124P.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAGATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATG
GAAAGGT----------TGTTTTAGTAGGTCCNCTCCNCACCCAAAGCGCTGTTAAANAA
TTCNCTGAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAAT
AAACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGAT
GCTCCAATNGTAAAGACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAAT
NTTGACGATGCTTTTGCCTGGAANAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTC
NCAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATA
GTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAA
NAGACCGGAGGTGGTAAAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGN
ACTAANACNATCNACCTATGGTAATACTANGCCNTTATCCCAAGGNATCNATTTTAACTA
AAATTACCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTG
Length of connected seq. 1187
Full length Seq ID -
Full length Seq. -
Length of full length seq. -