SFB108
Library SF
(Link to library)
Clone ID SFB108
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13190-1
Original site URL
Representative seq. ID SFB108P
(Link to Original site)
Representative DNA sequence
>SFB108 (SFB108Q) /CSM/SF/SFB1-A/SFB108Q.Seq.d/
ATTTTTTAATTTATTAATAACCAAAATTTCAAATATTTCAACTATTTTGTATTTGTTTTT
AATACACATAAAATGGATTCATTTGTATTAGATGCACAAAACCCAAACCCAAAAAATTTA
AAAAATTTATTAAAATATGAAGAACAACTCGAAAGACAACATGTCTCATTAGATAATATT
TTAGGCGCCCTTGATGTCAGAAATCATTCATTAGGTCAACTTTTAGTATTAAAAGCCAAA
GGCAGTGATCAAGGTAAAAATCGTTCTGTTTTTTTGATCAATGTAATAATTTCTTAGAAA
TTGTAATGTTGAACAAGTTAGATTAGCACCAGCTCAATTATCACAACTTAGTAAATTTTA
TACAGAAGCATTATATGAATTAAAGCAACCAATTAGAGGTGTTGCAGTACTCAAAGATGC
ACTTAATATTTTATCCGATAATAAACCAACAACCACTCTTACACCAATTCATACAGATTT
TTTACAACTTTGTATCCTTTCAAAATGTTATCATCAAGCACTCCCATTAATTGAAAGTAA
CATCACTCACATTAATCXXXXXXXXXXCCNNAAGGAAGCANCTGGGGNTNAGTTNNNCTT
TCAATTNANNCAACCNATCGTAGAAATATCAAAAANCTCNCTCAAACTTTTATGACTCTT
TCAATTAATGATATTGCTGAAAAGGTTTCTCTTCCAAAAGCAAAAGCTGAACAATTCGTT
TTAAAGATGATTGAAGAAGGTGAAATTTTTGCAACTATTAATCAAAAAGATGGTATGGTT
ACTTTTGATGAATGTTTTGAAGATTTTAGTGGTCCAACTATCTTAAATGATTTGGATCGT
AATATCAACAATATTGTTGGTTTAGAATCAAAGATTAAAGAGATGGATGAAAAGATTTCA
TTAAGTAATAATTATTTAAAGAAATTAGCTTCTGGAAAGAATACAGGTCAATTATCTCAA
TATGAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
ffnllitkisnistilylflihikwihly*mhktqtqki*kiy*nmknnskdnmsh*iif
*aplmseiih*vnf*y*kpkavikvkivlff*sm**FLRNCNVEQVRLAPAQLSQLSKFY
TEALYELKQPIRGVAVLKDALNILSDNKPTTTLTPIHTDFLQLCILSKCYHQALPLIESN
ITHIN---

---PXGSXWGXVXLSIXXTXRRNIKXLXQTFMTLSINDIAEKVSLPKAKAEQFVLKMIEE
GEIFATINQKDGMVTFDECFEDFSGPTILNDLDRNINNIVGLESKIKEMDEKISLSNNYL
KKLASGKNTGQLSQYE


Translated Amino Acid sequence (All Frames)
Frame A:
if*finnqnfkyfnyfvfvfnthkmdsfvldaqnpnpknlknllkyeeqlerqhvsldni
lgaldvrnhslgqllvlkakgsdqgknrsvflinviis*kl*c*ts*istssiitt**il
yrsii*ikatn*rccstqrct*yfir**tnnhsytnsyrffttlypfkmlssstpin*k*
hhsh*---

---PXGSXWGXVXLSIXXTXRRNIKXLXQTFMTLSINDIAEKVSLPKAKAEQFVLKMIEE
GEIFATINQKDGMVTFDECFEDFSGPTILNDLDRNINNIVGLESKIKEMDEKISLSNNYL
KKLASGKNTGQLSQYE

Frame B:
ffnllitkisnistilylflihikwihly*mhktqtqki*kiy*nmknnskdnmsh*iif
*aplmseiih*vnf*y*kpkavikvkivlff*sm**FLRNCNVEQVRLAPAQLSQLSKFY
TEALYELKQPIRGVAVLKDALNILSDNKPTTTLTPIHTDFLQLCILSKCYHQALPLIESN
ITHIN---

---xkeaxgxxxxfqxxqpiveiskxslkll*lfqlmillkrflfqkqklnnsf*r*lkk
vkflqllikkmvwlllmnvlkilvvqls*miwivistillv*nqrlkrwmkrfh*viii*
rn*lleriqvnylnm

Frame C:
fliy**pkfqifqlfcicf*yt*ngficirctkpkpkkfkkfiki*rttrkttclir*yf
rrp*cqksfirstfsiksqrq*sr*ksfcffdqcnnfleivmlnkld*hqlnyhnlvnfi
qkhymn*snqlevlqyskmhlifypiinqqpllhqfiqifynfvsfqnviikhsh*lkvt
sltli---

---xrkxlgxsxxfnxxnxs*kyqkxxsnfydsfn**yc*kgfssksks*tirfkdd*rr
*nfcny*skrwygyf**mf*rf*wsnylk*fgs*yqqycwfrikd*rdg*kdfik**lfk
eisfwkeyrsiisi*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFB108 (SFB108Q) /CSM/SF/SFB1-A/SFB108Q.Seq.d/ 1463 0.0
VFN573 (VFN573Q) /CSM/VF/VFN5-D/VFN573Q.Seq.d/ 767 0.0
VFK718 (VFK718Q) /CSM/VF/VFK7-A/VFK718Q.Seq.d/ 767 0.0
VFD429 (VFD429Q) /CSM/VF/VFD4-B/VFD429Q.Seq.d/ 767 0.0
SSM560 (SSM560Q) /CSM/SS/SSM5-C/SSM560Q.Seq.d/ 767 0.0
SFG751 (SFG751Q) /CSM/SF/SFG7-C/SFG751Q.Seq.d/ 767 0.0
SFG708 (SFG708Q) /CSM/SF/SFG7-A/SFG708Q.Seq.d/ 767 0.0
SFF193 (SFF193Q) /CSM/SF/SFF1-D/SFF193Q.Seq.d/ 767 0.0
SFE815 (SFE815Q) /CSM/SF/SFE8-A/SFE815Q.Seq.d/ 767 0.0
CHE353 (CHE353Q) /CSM/CH/CHE3-C/CHE353Q.Seq.d/ 767 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU412231|BU412231.1 603154444F1 CSEQRBL05 Gallus gallus cDNA clone ChEST166g12 5', mRNA sequence. 58 2e-04 1
BX694636|BX694636.1 Xenopus tropicalis EST, clone TNeu110k17 3'. 58 2e-04 1
BU253832|BU253832.1 603744150F1 CSEQCHN38 Gallus gallus cDNA clone ChEST646c14 5', mRNA sequence. 58 2e-04 1
BX693030|BX693030.1 Xenopus tropicalis EST, clone TNeu097m08 3'. 58 2e-04 1
AL798801|AL798801.2 Xenopus tropicalis EST, clone TNeu110k17 5'. 58 2e-04 1
AJ398505|AJ398505.1 Gallus gallus EST clone 6d5r1. 58 2e-04 1
BX769933|BX769933.1 Xenopus tropicalis EST, clone TEgg035m07 3'. 58 2e-04 1
BU110519|BU110519.1 603002255F1 CSEQCHL13 Gallus gallus cDNA clone ChEST9m14 5', mRNA sequence. 58 2e-04 1
BU300733|BU300733.1 603735532F1 CSEQCHN56 Gallus gallus cDNA clone ChEST624p7 5', mRNA sequence. 58 2e-04 1
BU298691|BU298691.1 603612208F1 CSEQCHN56 Gallus gallus cDNA clone ChEST603p1 5', mRNA sequence. 58 2e-04 1
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT075168_1(BT075168|pid:none) Osmerus mordax clone omor-rgc-505-... 84 1e-15
BC045415_1(BC045415|pid:none) Danio rerio COP9 constitutive phot... 84 2e-15
(Q6P2U9) RecName: Full=COP9 signalosome complex subunit 3; ... 84 2e-15
BT046088_1(BT046088|pid:none) Salmo salar clone ssal-rgf-541-144... 84 3e-15
BT043769_1(BT043769|pid:none) Salmo salar clone HM6_1193 COP9 co... 84 3e-15
AK048906_1(AK048906|pid:none) Mus musculus 0 day neonate cerebel... 71 3e-15
(Q28IV6) RecName: Full=COP9 signalosome complex subunit 3; ... 85 3e-15
(Q5ZJF1) RecName: Full=COP9 signalosome complex subunit 3; ... 84 4e-15
AK058565_1(AK058565|pid:none) Oryza sativa Japonica Group cDNA c... 83 1e-14
BT044093_1(BT044093|pid:none) Drosophila melanogaster FI02069 fu... 82 3e-14
protein update 2009. 5.22
PSORT

psg: 0.76 gvh: 0.37 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SFB108 is nuc

5' end seq. ID SFB108F
5' end seq.
>SFB108F.Seq
ATTTTTTAATTTATTAATAACCAAAATTTCAAATATTTCAACTATTTTGTATTTGTTTTT
AATACACATAAAATGGATTCATTTGTATTAGATGCACAAAACCCAAACCCAAAAAATTTA
AAAAATTTATTAAAATATGAAGAACAACTCGAAAGACAACATGTCTCATTAGATAATATT
TTAGGCGCCCTTGATGTCAGAAATCATTCATTAGGTCAACTTTTAGTATTAAAAGCCAAA
GGCAGTGATCAAGGTAAAAATCGTTCTGTTTTTTTGATCAATGTAATAATTTCTTAGAAA
TTGTAATGTTGAACAAGTTAGATTAGCACCAGCTCAATTATCACAACTTAGTAAATTTTA
TACAGAAGCATTATATGAATTAAAGCAACCAATTAGAGGTGTTGCAGTACTCAAAGATGC
ACTTAATATTTTATCCGATAATAAACCAACAACCACTCTTACACCAATTCATACAGATTT
TTTACAACTTTGTATCCTTTCAAAATGTTATCATCAAGCACTCCCATTAATTGAAAGTAA
CATCACTCACATTAATC----------
Length of 5' end seq. 557
3' end seq. ID SFB108Z
3' end seq.
>SFB108Z.Seq
----------CCNNAAGGAAGCANCTGGGGNTNAGTTNNNCTTTCAATTNANNCAACCNA
TCGTAGAAATATCAAAAANCTCNCTCAAACTTTTATGACTCTTTCAATTAATGATATTGC
TGAAAAGGTTTCTCTTCCAAAAGCAAAAGCTGAACAATTCGTTTTAAAGATGATTGAAGA
AGGTGAAATTTTTGCAACTATTAATCAAAAAGATGGTATGGTTACTTTTGATGAATGTTT
TGAAGATTTTAGTGGTCCAACTATCTTAAATGATTTGGATCGTAATATCAACAATATTGT
TGGTTTAGAATCAAAGATTAAAGAGATGGATGAAAAGATTTCATTAAGTAATAATTATTT
AAAGAAATTAGCTTCTGGAAAGAATACAGGTCAATTATCTCAATATGAA
Length of 3' end seq. 399
Connected seq. ID SFB108P
Connected seq.
>SFB108P.Seq
ATTTTTTAATTTATTAATAACCAAAATTTCAAATATTTCAACTATTTTGTATTTGTTTTT
AATACACATAAAATGGATTCATTTGTATTAGATGCACAAAACCCAAACCCAAAAAATTTA
AAAAATTTATTAAAATATGAAGAACAACTCGAAAGACAACATGTCTCATTAGATAATATT
TTAGGCGCCCTTGATGTCAGAAATCATTCATTAGGTCAACTTTTAGTATTAAAAGCCAAA
GGCAGTGATCAAGGTAAAAATCGTTCTGTTTTTTTGATCAATGTAATAATTTCTTAGAAA
TTGTAATGTTGAACAAGTTAGATTAGCACCAGCTCAATTATCACAACTTAGTAAATTTTA
TACAGAAGCATTATATGAATTAAAGCAACCAATTAGAGGTGTTGCAGTACTCAAAGATGC
ACTTAATATTTTATCCGATAATAAACCAACAACCACTCTTACACCAATTCATACAGATTT
TTTACAACTTTGTATCCTTTCAAAATGTTATCATCAAGCACTCCCATTAATTGAAAGTAA
CATCACTCACATTAATC----------CCNNAAGGAAGCANCTGGGGNTNAGTTNNNCTT
TCAATTNANNCAACCNATCGTAGAAATATCAAAAANCTCNCTCAAACTTTTATGACTCTT
TCAATTAATGATATTGCTGAAAAGGTTTCTCTTCCAAAAGCAAAAGCTGAACAATTCGTT
TTAAAGATGATTGAAGAAGGTGAAATTTTTGCAACTATTAATCAAAAAGATGGTATGGTT
ACTTTTGATGAATGTTTTGAAGATTTTAGTGGTCCAACTATCTTAAATGATTTGGATCGT
AATATCAACAATATTGTTGGTTTAGAATCAAAGATTAAAGAGATGGATGAAAAGATTTCA
TTAAGTAATAATTATTTAAAGAAATTAGCTTCTGGAAAGAATACAGGTCAATTATCTCAA
TATGAA
Length of connected seq. 956
Full length Seq ID -
Full length Seq. -
Length of full length seq. -