>SFB104 (SFB104Q) /CSM/SF/SFB1-A/SFB104Q.Seq.d/
AAAAAATCCACTTAAACTAAATTTTTTTAGCTATAGCTTAACAATTGTTTTGTTTTTACA
TTTTAAATAATTTTAAAATAATTTATGTTTTTAATAATAAAATAAATAACAATAAAAAAA
AAAXXXXXXXXXXGGGCGCAATGATACTTTGGTACTCTTGGTATGGTTATACAGCTGGTG
CTTCATTAGGTATGACAAGAAGTAGAGTTTTACCAGCTTCTCGTGTTAGTGTTGTTGTAA
CACTATCAGGTGCAACTGGTTTAATAACGGTTTTAGGTATTGGTAAAATATTCAATGGTC
ATTATGACTTGGTTAAAGGTATAAATGGTTTAATTGCTGGTTTAGTATCTTCAACTTCAT
CTTGTGCTTATATTGAACCATGGGCTGCAATTATAATTGGTTTTATTGGTGGTATTGTTT
ATTGGTTTTCATCATGGGCATTATTAAATTGGTTAAGATTAGATGATCCAGTTGATTCAA
CAGCAATTCATTTATTTGGAGGATGTTGGAGTCTAATAAGTGTTGCATTTTTCGCTACAC
ATGGTAGAGTTAGGAACCCAGATATCATTTTACCTGGTGGAATATTTTATGGTGGTGGAA
TTAGTTTATTATGGGTACAATTAGTTGGAATGGTTCTGGCAATTTTATGGGCAGGTTTCC
TATCAGGTATTTTCTTTTTTACAATGGATTATTTCGGTAAACTTAGAGTTGATG

kihln*iflaia*QLFCFYILNNFKIIYVFNNKINNNKKK---

---GAMILWYSWYGYTAGASLGMTRSRVLPASRVSVVVTLSGATGLITVLGIGKIFNGHY
DLVKGINGLIAGLVSSTSSCAYIEPWAAIIIGFIGGIVYWFSSWALLNWLRLDDPVDSTA
IHLFGGCWSLISVAFFATHGRVRNPDIILPGGIFYGGGISLLWVQLVGMVLAILWAGFLS
GIFFFTMDYFGKLRVD

Frame A:
kkst*tkff*l*lnncfvftf*iilk*fmfliik*itikkk---

---grndtlvllvwlyswcfirydkk*sftsfsc*cccntircnwfnngfryw*niqwsl
*lg*rykwfncwfsifnfilcly*tmgcnynwfywwycllvfimgiiklvkir*ss*fns
nsfiwrmlesnkccifrytw*s*epryhftwwnilwwwn*fimgtiswngsgnfmgrfpi
ryflfynglfr*t*s*

Frame B:
knplklnffsysltivlflhfk*f*nnlcf***nk*q*kk---

---GAMILWYSWYGYTAGASLGMTRSRVLPASRVSVVVTLSGATGLITVLGIGKIFNGHY
DLVKGINGLIAGLVSSTSSCAYIEPWAAIIIGFIGGIVYWFSSWALLNWLRLDDPVDSTA
IHLFGGCWSLISVAFFATHGRVRNPDIILPGGIFYGGGISLLWVQLVGMVLAILWAGFLS
GIFFFTMDYFGKLRVD

Frame C:
kihln*iflaia*QLFCFYILNNFKIIYVFNNKINNNKKK---

---aq*yfgtlgmviqlvlh*v*qevefyqllvlvll*hyqvqlv**rf*vlvkysmvim
twlkv*mv*llv*ylqlhlvlilnhglql*lvllvvlfigfhhghy*ig*d*miqliqqq
fiyledvgv**vlhfslhmvelgtqisfylveyfmvvelvyygyn*lewfwqfygqvsyq
vfsflqwiisvnlelm

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFB104 (SFB104Q) /CSM/SF/SFB1-A/SFB104Q.Seq.d/                       1152   0.0
SFE711 (SFE711Q) /CSM/SF/SFE7-A/SFE711Q.Seq.d/                       1126   0.0
VFO663 (VFO663Q) /CSM/VF/VFO6-C/VFO663Q.Seq.d/                       1094   0.0
SSH440 (SSH440Q) /CSM/SS/SSH4-B/SSH440Q.Seq.d/                         40   0.045
SSC188 (SSC188Q) /CSM/SS/SSC1-D/SSC188Q.Seq.d/                         38   0.18
SFE774 (SFE774Q) /CSM/SF/SFE7-D/SFE774Q.Seq.d/                         38   0.18
VSK231 (VSK231Q) /CSM/VS/VSK2-B/VSK231Q.Seq.d/                         36   0.71
VSJ247 (VSJ247Q) /CSM/VS/VSJ2-B/VSJ247Q.Seq.d/                         36   0.71
VSI548 (VSI548Q) /CSM/VS/VSI5-B/VSI548Q.Seq.d/                         36   0.71
VSH240 (VSH240Q) /CSM/VS/VSH2-B/VSH240Q.Seq.d/                         36   0.71

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF510718|AF510718.1 Dictyostelium discoideum ammonium transport protein C mRNA, complete cds.  1072   0.0    1
AB089904|AB089904.1 Dictyostelium discoideum gene for ammonium transporter AmtC, complete cds.   611   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   7e-05  12
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   3e-04  11
AX344569|AX344569.1 Sequence 20 from Patent WO0200932.             32   0.20   10
BE118333|BE118333.1 UI-R-BS1-azk-d-10-0-UI.s1 UI-R-BS1 Rattus norvegicus cDNA clone UI-R-BS1-azk-d-10-0-UI 3', mRNA sequence.    34   0.23   2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   0.27   9
AC135668|AC135668.3 Mus musculus chromosome UNK clone RP23-280P7, WORKING DRAFT SEQUENCE, 11 unordered pieces.    34   0.34   2
AC125175|AC125175.4 Mus musculus BAC clone RP24-572I8 from chromosome 6, complete sequence.    34   0.35   2
BX324123|BX324123.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-157H5.    42   0.41   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MXY0) RecName: Full=Ammonium transporter 3;  &AB089904_1(AB08...   377   e-103
AF510718_1(AF510718|pid:none) Dictyostelium discoideum ammonium ...   368   e-100
(Q9BLG3) RecName: Full=Ammonium transporter 2;  &AB049068_1(AB04...   142   1e-32
AF479643_1(AF479643|pid:none) Chlamydomonas reinhardtii putative...   114   2e-24
AY651853_1(AY651853|pid:none) Cylindrotheca fusiformis ammonium ...   112   1e-23
AP008955_905(AP008955|pid:none) Brevibacillus brevis NBRC 100599...   108   2e-22
CP001574_220(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   108   2e-22
CP000909_976(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...   108   2e-22
CS326491_1(CS326491|pid:none) Sequence 21 from Patent WO20060629...   107   3e-22
AF083036_1(AF083036|pid:none) Arabidopsis thaliana ammonium tran...   107   4e-22

 psg: 0.89  gvh: 0.42  alm: 0.25  top: 0.43  tms: 0.27  mit: 0.33  mip: 0.22
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFB104 is end

>SFB104F.Seq
AAAAAATCCACTTAAACTAAATTTTTTTAGCTATAGCTTAACAATTGTTTTGTTTTTACA
TTTTAAATAATTTTAAAATAATTTATGTTTTTAATAATAAAATAAATAACAATAAAAAAA
AAA----------

>SFB104Z.Seq
----------GGGCGCAATGATACTTTGGTACTCTTGGTATGGTTATACAGCTGGTGCTT
CATTAGGTATGACAAGAAGTAGAGTTTTACCAGCTTCTCGTGTTAGTGTTGTTGTAACAC
TATCAGGTGCAACTGGTTTAATAACGGTTTTAGGTATTGGTAAAATATTCAATGGTCATT
ATGACTTGGTTAAAGGTATAAATGGTTTAATTGCTGGTTTAGTATCTTCAACTTCATCTT
GTGCTTATATTGAACCATGGGCTGCAATTATAATTGGTTTTATTGGTGGTATTGTTTATT
GGTTTTCATCATGGGCATTATTAAATTGGTTAAGATTAGATGATCCAGTTGATTCAACAG
CAATTCATTTATTTGGAGGATGTTGGAGTCTAATAAGTGTTGCATTTTTCGCTACACATG
GTAGAGTTAGGAACCCAGATATCATTTTACCTGGTGGAATATTTTATGGTGGTGGAATTA
GTTTATTATGGGTACAATTAGTTGGAATGGTTCTGGCAATTTTATGGGCAGGTTTCCTAT
CAGGTATTTTCTTTTTTACAATGGATTATTTCGGTAAACTTAGAGTTGATG

>SFB104P.Seq
AAAAAATCCACTTAAACTAAATTTTTTTAGCTATAGCTTAACAATTGTTTTGTTTTTACA
TTTTAAATAATTTTAAAATAATTTATGTTTTTAATAATAAAATAAATAACAATAAAAAAA
AAA----------GGGCGCAATGATACTTTGGTACTCTTGGTATGGTTATACAGCTGGTG
CTTCATTAGGTATGACAAGAAGTAGAGTTTTACCAGCTTCTCGTGTTAGTGTTGTTGTAA
CACTATCAGGTGCAACTGGTTTAATAACGGTTTTAGGTATTGGTAAAATATTCAATGGTC
ATTATGACTTGGTTAAAGGTATAAATGGTTTAATTGCTGGTTTAGTATCTTCAACTTCAT
CTTGTGCTTATATTGAACCATGGGCTGCAATTATAATTGGTTTTATTGGTGGTATTGTTT
ATTGGTTTTCATCATGGGCATTATTAAATTGGTTAAGATTAGATGATCCAGTTGATTCAA
CAGCAATTCATTTATTTGGAGGATGTTGGAGTCTAATAAGTGTTGCATTTTTCGCTACAC
ATGGTAGAGTTAGGAACCCAGATATCATTTTACCTGGTGGAATATTTTATGGTGGTGGAA
TTAGTTTATTATGGGTACAATTAGTTGGAATGGTTCTGGCAATTTTATGGGCAGGTTTCC
TATCAGGTATTTTCTTTTTTACAATGGATTATTTCGGTAAACTTAGAGTTGATG