SFA739
Library SF
(Link to library)
Clone ID SFA739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15323-1
Original site URL
Representative seq. ID SFA739Z
(Link to Original site)
Representative DNA sequence
>SFA739 (SFA739Q) /CSM/SF/SFA7-B/SFA739Q.Seq.d/
XXXXXXXXXXCAATCAAAGCCNCCTCTGANCAAATTGGTAAATTCACCGTCCNGTACCCT
TCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGTCAAACTGA
AATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCATGGGCTCT
CTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAAGGTGAATC
TGCCAACGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SKPPLXKLVNSPSXTLQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNRPWALS
FSYGRALQASVISTWKGESAN


Translated Amino Acid sequence (All Frames)
Frame A:
---nqsxl*xnw*ihrpvpfnvlfhqlllvlfsylvvklklkplqt*tl*msyqivhgls
lshtvvpyrplssplgkvnlpt


Frame B:
---ikaxsxqigkftvxypstycstssywccfliwwsn*n*shcklkryecltkssmgsl
flirscltglchlhler*icqr


Frame C:
---SKPPLXKLVNSPSXTLQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNRPWALS
FSYGRALQASVISTWKGESAN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFA739 (SFA739Q) /CSM/SF/SFA7-B/SFA739Q.Seq.d/ 456 e-128
VSE321 (VSE321Q) /CSM/VS/VSE3-A/VSE321Q.Seq.d/ 446 e-125
VFN794 (VFN794Q) /CSM/VF/VFN7-D/VFN794Q.Seq.d/ 446 e-125
VFM531 (VFM531Q) /CSM/VF/VFM5-B/VFM531Q.Seq.d/ 446 e-125
VFL144 (VFL144Q) /CSM/VF/VFL1-B/VFL144Q.Seq.d/ 446 e-125
VFK562 (VFK562Q) /CSM/VF/VFK5-C/VFK562Q.Seq.d/ 446 e-125
VFJ370 (VFJ370Q) /CSM/VF/VFJ3-C/VFJ370Q.Seq.d/ 446 e-125
VFJ101 (VFJ101Q) /CSM/VF/VFJ1-A/VFJ101Q.Seq.d/ 446 e-125
VFI422 (VFI422Q) /CSM/VF/VFI4-A/VFI422Q.Seq.d/ 446 e-125
VFG433 (VFG433Q) /CSM/VF/VFG4-B/VFG433Q.Seq.d/ 446 e-125

own update 2002.11.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 389 e-120 2
X65742|X65742.1 S.oleracae ALDCyt mRNA for fructose-1,6-biphosphate aldolase. 56 7e-06 2
AW782996|AW782996.1 ra22b05.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F01F1.12 CE01225 FRUCTOSE-BIPHOSPHATE ALDOLASE ;, mRNA sequence. 46 0.22 1
AW828480|AW828480.1 ra62c09.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F01F1.12 CE01225 FRUCTOSE-BIPHOSPHATE ALDOLASE ;, mRNA sequence. 46 0.22 1
AC094255|AC094255.7 Rattus norvegicus clone CH230-3E14, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces. 42 0.84 2
BE280488|BE280488.1 601155345F1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE:3138899 5', mRNA sequence. 44 0.85 1
BX732837|BX732837.1 Xenopus tropicalis EST, clone TTpA077n17 5'. 42 3.4 1
BX715912|BX715912.1 Xenopus tropicalis EST, clone TTpA027a02 5'. 42 3.4 1
CF224854|CF224854.1 AGENCOURT_15065548 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:6978067 3', mRNA sequence. 42 3.4 1
BX718572|BX718572.1 Xenopus tropicalis EST, clone TTpA045m14 3'. 42 3.4 1
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86A67) RecName: Full=Fructose-bisphosphate aldolase; ... 130 2e-29
AM910994_614(AM910994|pid:none) Plasmodium knowlesi strain H chr... 100 1e-20
AF247060_1(AF247060|pid:none) Plasmodium chabaudi AS fructose 1,... 98 8e-20
AY540633_1(AY540633|pid:none) Plasmodium yoelii nigeriensis aldo... 97 2e-19
AF247062_1(AF247062|pid:none) Plasmodium berghei QIMR fructose 1... 97 2e-19
EU589949_1(EU589949|pid:none) Plasmodium vivax isolate ASA060240... 97 2e-19
AF179421_1(AF179421|pid:none) Plasmodium falciparum isolate FCC1... 97 2e-19
A45610(A45610)fructose-bisphosphate aldolase (EC 4.1.2.13) 2 - P... 97 2e-19
AF247063_1(AF247063|pid:none) Plasmodium vivax WDK fructose 1,6-... 97 2e-19
AF247059_1(AF247059|pid:none) Plasmodium yoelii YM fructose 1,6-... 97 2e-19
protein update 2009. 5.21
PSORT

psg: 0.78 gvh: 0.64 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
32.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SFA739 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFA739Z
3' end seq.
>SFA739Z.Seq
----------CAATCAAAGCCNCCTCTGANCAAATTGGTAAATTCACCGTCCNGTACCCT
TCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGTCAAACTGA
AATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCATGGGCTCT
CTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAAGGTGAATC
TGCCAACGT
Length of 3' end seq. 239
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -