>SFA692 (SFA692Q) /CSM/SF/SFA6-D/SFA692Q.Seq.d/
XXXXXXXXXXTTTACATTTGAATGTCATACAGAAAATGATACAGTAGCATATGCAGTTAA
TAATATTTCATTTGCATTNCCATATGGTACATTCGCAACAGCAGGTTCTGATGGTGGTTT
CAGTTTTTGGGATAAAGAATCCAAATTTAGATTAAAACAATTTTCAAAATTACCACAATC
AATTTCAACAGCAACTTTCAATCTTGATGCTTCTTTATATGCTTATGCATCATCTTATGA
TTGGAAGTAAAGGTAGTCAATATTTTGTATCCNGAATCAACCAAA

---TFECHTENDTVAYAVNNISFAXPYGTFATAGSDGGFSFWDKESKFRLKQFSKLPQSI
STATFNLDASLYAYASSYDWK*r*sifcixnqp

Frame A:
---lhlnviqkmiq*hmqliifhlhxhmvhsqqqvlmvvsvfgiknpnld*nnfqnyhnq
fqqqlsilmllymlmhhlmigskgsqyfvsxinq


Frame B:
---yi*msyrk*yssics**yficixiwyirnsrf*wwfqflg*riqi*iktifkittin
fnsnfqs*cfficlciil*levkvvnilypestk


Frame C:
---TFECHTENDTVAYAVNNISFAXPYGTFATAGSDGGFSFWDKESKFRLKQFSKLPQSI
STATFNLDASLYAYASSYDWK*r*sifcixnqp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA692 (SFA692Q) /CSM/SF/SFA6-D/SFA692Q.Seq.d/                        533   e-151
SSJ407 (SSJ407Q) /CSM/SS/SSJ4-A/SSJ407Q.Seq.d/                         42   0.004
VHP773 (VHP773Q) /CSM/VH/VHP7-D/VHP773Q.Seq.d/                         34   1.1
VHP674 (VHP674Q) /CSM/VH/VHP6-D/VHP674Q.Seq.d/                         34   1.1
VHN294 (VHN294Q) /CSM/VH/VHN2-D/VHN294Q.Seq.d/                         34   1.1
VHM575 (VHM575Q) /CSM/VH/VHM5-D/VHM575Q.Seq.d/                         34   1.1
VHD876 (VHD876Q) /CSM/VH/VHD8-D/VHD876Q.Seq.d/                         34   1.1
VFO671 (VFO671Q) /CSM/VF/VFO6-C/VFO671Q.Seq.d/                         34   1.1
VFN564 (VFN564Q) /CSM/VF/VFN5-C/VFN564Q.Seq.d/                         34   1.1
VFN522 (VFN522Q) /CSM/VF/VFN5-A/VFN522Q.Seq.d/                         34   1.1

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF657750|CF657750.1 tac75c08.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:RA1L_HUMAN P78406 MRNA-ASSOCIATED PROTEIN MRNP 41 ;, mRNA sequence.    36   0.013  2
BI320995|BI320995.1 saf23h06.y3 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-1884 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1
CB063315|CB063315.1 sav58c04.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-7399 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1
BG404881|BG404881.1 sac42d11.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-2494 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1
AI965448|AI965448.1 sc72a04.y1 Gm-c1018 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1018-391 5' similar to TR:O74224 O74224 SONA. ;, mRNA sequence.    48   0.063  1
BI894072|BI894072.1 sai59g03.y1 Gm-c1068 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1068-3005 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1
BE191388|BE191388.1 sn71h11.y1 Gm-c1038 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1038-94 5' similar to TR:O74224 O74224 SONA. ;, mRNA sequence.    48   0.063  1
CA820639|CA820639.1 sau92d01.y1 Gm-c1048 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1048-3242 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1
BQ740426|BQ740426.1 saq47b07.y1 Gm-c1076 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1076-2773 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1
BQ740278|BQ740278.1 saq45b07.y1 Gm-c1076 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1076-2749 5' similar to TR:Q9SAJ0 Q9SAJ0 F23A5.2(FORM2). ;, mRNA sequence.    48   0.063  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000586_162(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...    99   3e-20
AP004317_26(AP004317|pid:none) Oryza sativa Japonica Group genom...    98   8e-20
CP001324_124(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    97   2e-19
EF083426_1(EF083426|pid:none) Picea sitchensis clone WS0277_I23 ...    96   3e-19
AK111670_1(AK111670|pid:none) Oryza sativa Japonica Group cDNA c...    95   6e-19
EU976514_1(EU976514|pid:none) Zea mays clone 896569 rae1-like pr...    93   3e-18
AL451109_9(AL451109|pid:none) Neurospora crassa DNA linkage grou...    92   4e-18
(P41838) RecName: Full=Poly(A)+ RNA export protein;  &A56119(A56...    89   4e-17
(Q4R6D2) RecName: Full=mRNA export factor; AltName: Full=mRNA-as...    89   4e-17
(P78406) RecName: Full=mRNA export factor; AltName: Full=mRNA-as...    89   4e-17

 psg: 0.75  gvh: 0.43  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SFA692 is cyt

>SFA692Z.Seq
----------TTTACATTTGAATGTCATACAGAAAATGATACAGTAGCATATGCAGTTAA
TAATATTTCATTTGCATTNCCATATGGTACATTCGCAACAGCAGGTTCTGATGGTGGTTT
CAGTTTTTGGGATAAAGAATCCAAATTTAGATTAAAACAATTTTCAAAATTACCACAATC
AATTTCAACAGCAACTTTCAATCTTGATGCTTCTTTATATGCTTATGCATCATCTTATGA
TTGGAAGTAAAGGTAGTCAATATTTTGTATCCNGAATCAACCAAA