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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFA691
Library SF
(Link to library)
Clone ID SFA691
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SFA691E
(Link to Original site)
Representative DNA sequence 
>SFA691 (SFA691Q) /CSM/SF/SFA6-D/SFA691Q.Seq.d/
AAATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTT
TTTACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAACAAAGTCAATTCCTTGAATTT
CAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTT
AAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGAT
ACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTAT
TTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGAT
GAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACCT
GTAAAAAACCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGAG
GGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGAT
TGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGGT
GGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATCT
TCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTGGT
GCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATC
GTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGT
GGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGT
TACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCT
TGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGT
GGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAAT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
kyyi*NIKKMKVILLFVLAVFTVFVSSRGIPLEQSQFLEFQDKFNKKYSHEEYLERFEIF
KSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDD
EFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVD
CDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIG
AKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVG
YSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytk
Translated Amino Acid sequence (All Frames) 
Frame A:
kyyi*NIKKMKVILLFVLAVFTVFVSSRGIPLEQSQFLEFQDKFNKKYSHEEYLERFEIF
KSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDD
EFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVD
CDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIG
AKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVG
YSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytk


Frame B:
niiyetlkk*klyyylf*lfllflfqveefh*nkvnslnfkinsiknihmkniwkdlkfl
kai*eklkn*i**plitklilnlv*tslqifpvtnlkiii*iirkqyslmtfqlliilmm
nsliqfqlhligelevllhl*ktkvnvvvvghfqllvmlrdnislvrin*fhyqsktw*i
vimsvwnmkvnklvmrvvmvvfnqmhiiislkmvefkqnlhiltllkqvhnvtltlpilv
qrfpilq*sqrmkl*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llv
tllkiqfsvkichigl*rilgvqigenkdtfi*eeerihvvyqtlfqlv*fkfipn


Frame C:
ilymkh*knesyiiicfscfycfcfk*rnsirtksip*isr*iq*kift*rifgki*nf*
kqfrkn*riksnsh*sqs*y*iwckqvcrsfq*ri*kllfk**gsnih**pssc*ls***
ih*fnsnci*len*rccytckkprsmw*llvifnyw*c*gttfh*se*isfiiraklgrl
*s*vygi*r*tsl**gl*wwsstkci*lyh*kwwnsnrifislhc*nrytm*l*lcqywc
kdfqfyndpke*ncngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwl
lc*kynfp*kyaildckeflgcrlgrtrihlfkkrkeymwciklcfn*ynlnlyq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA691 (SFA691Q) /CSM/SF/SFA6-D/SFA691Q.Seq.d/                       1968   0.0
AFE263 (AFE263Q) /CSM/AF/AFE2-C/AFE263Q.Seq.d/                       1959   0.0
AHL332 (AHL332Q) /CSM/AH/AHL3-B/AHL332Q.Seq.d/                       1955   0.0
VFF582 (VFF582Q) /CSM/VF/VFF5-D/VFF582Q.Seq.d/                       1913   0.0
CFF469 (CFF469Q) /CSM/CF/CFF4-C/CFF469Q.Seq.d/                       1913   0.0
SFL285 (SFL285Q) /CSM/SF/SFL2-D/SFL285Q.Seq.d/                       1877   0.0
SFG524 (SFG524Q) /CSM/SF/SFG5-A/SFG524Q.Seq.d/                       1850   0.0
SFJ881 (SFJ881Q) /CSM/SF/SFJ8-D/SFJ881Q.Seq.d/                       1848   0.0
AFI295 (AFI295Q) /CSM/AF/AFI2-D/AFI295Q.Seq.d/                       1848   0.0
VFA268 (VFA268Q) /CSM/VF/VFA2-C/VFA268Q.Seq.d/                       1846   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.     1915   0.0    3
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                   194   7e-47  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   194   7e-47  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   194   7e-47  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                    194   7e-47  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   194   7e-47  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   194   7e-47  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   194   7e-47  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   194   8e-47  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                      194   8e-47  2
dna update 2003.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   677   0.0
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   314   3e-84
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   287   5e-76
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   287   5e-76
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot...   286   7e-76
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   286   7e-76
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20...   286   7e-76
EF144276_1(EF144276|pid:none) Populus trichocarpa clone PX0015_D...   282   1e-74
AC149637_11(AC149637|pid:none) Medicago truncatula clone mth2-18...   282   2e-74
AF138264_1(AF138264|pid:none) Ipomoea batatas papain-like cystei...   279   1e-73
protein update 2009. 7. 3
PSORT 

 psg: 0.99  gvh: 0.64  alm: 0.20  top: 0.13  tms: 0.07  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SFA691 is end
5' end seq. ID SFA691F
5' end seq. 
>SFA691F.Seq
AAATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTT
TTTACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAACAAAGTCAATTCCTTGAATTT
CAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTT
AAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGAT
ACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTAT
TTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGAT
GAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACCT
GTAAAAAACCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGAG
GGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGAT
TGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGGT
GGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGT----------
Length of 5' end seq. 642
3' end seq. ID SFA691Z
3' end seq. 
>SFA691Z.Seq
----------ANAGGTGCTGTTACACCTGTAAAAAACCAAGGTCAATGTGGTAGTTGTTG
GTCATTTTCAACTACTGGTAATGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGT
TTCATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGA
ACAAGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCATATAATTATATCAT
TAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCTGAAACAGGTACACA
ATGTAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAA
GAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGA
TGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTC
ACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAA
TATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACAT
TTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAAT
TTAAATTTATACCAAAT
Length of 3' end seq. 667
Connected seq. ID SFA691P
Connected seq. 
>SFA691P.Seq
AAATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTT
TTTACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAACAAAGTCAATTCCTTGAATTT
CAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTT
AAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGAT
ACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTAT
TTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGAT
GAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACCT
GTAAAAAACCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGAG
GGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGAT
TGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGGT
GGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGT----------ANAGGTGC
TGTTACACCTGTAAAAAACCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGG
TAATGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAA
CTTGGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGG
TTGTAATGGTGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCA
AACAGAATCTTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGC
CAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGC
TGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATT
TTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTT
AATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGT
AAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAA
GAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAAT
Length of connected seq. 1309
Full length Seq ID SFA691E
Full length Seq. 
>SFA691E.Seq
AAATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTT
TTTACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAACAAAGTCAATTCCTTGAATTT
CAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTT
AAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGAT
ACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTAT
TTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGAT
GAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACCT
GTAAAAAACCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGAG
GGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGAT
TGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGGT
GGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATCT
TCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTGGT
GCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATC
GTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGT
GGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGT
TACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCT
TGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGT
GGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAAT
Length of full length seq. 1069