SFA668
Library SF
(Link to library)
Clone ID SFA668
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12091-1
Original site URL
Representative seq. ID SFA668P
(Link to Original site)
Representative DNA sequence
>SFA668 (SFA668Q) /CSM/SF/SFA6-C/SFA668Q.Seq.d/
ATTAATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATT
AGATATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATT
GGATGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGAT
TTGGAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTA
TGATGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGA
TATTCATTTCTTTTTAGGTACTTTTACTACCCAAGATGAAGCTGGCACTGCTGCTTATAA
AACAGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATC
ATATGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGT
TGAATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAG
TGGTGATAAGAATGCTAAAGTCGCTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGG
TGACTGTTTCCTTTTGGATGCAGGTTTAXXXXXXXXXXTTTNTCAATTNNGATGGTAGTA
ANTCAAGTCCNCAAGGAAANGAATAAAGCCGGTGAAGTTGCACGTGCAATCGATGCAGAA
AGAAAAGGTTTACCAAAAGTTGAAGTTTTCTGTGAAACCGATTNCGATATTCCAGNTGAA
TTTTGGAAACTTTTAGGTGGAAAAAGTGCAATCGCTGCTAAACACGAAACTGCCCCAACC
AAATCTGAAAAAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAA
GTTTCACGTGGTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGAT
TTAGGTAATGAAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACA
GCATTCAGTCATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATA
GTTAGAGTTTTAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAA
TAAAACACAACAACAACAACAACACATTCAAAAAGTCAATTTTGTATCATAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
li*KTIIKTTNTKMIKNRKLDITSTNVAGIGTDLDKKCRLDAASTEAQWKGVGQAPGLKI
WRIENFKVVPVPESSYGKFYDGDSYIILHTFKEGNSLKHDIHFFLGTFTTQDEAGTAAYK
TVELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGGVESGFNHVKPTEYKPRLLHIS
GDKNAKVAEVPLATSSLNSGDCFLLDAGL---

---XSIXMVVXQVXKEXNKAGEVARAIDAERKGLPKVEVFCETDXDIPXEFWKLLGGKSA
IAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRGKINKSSLKSEDVFIIDLGNEIYTWIG
SKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVLENGTNQSFETLLSA***ntttttths
ksqfciik


Translated Amino Acid sequence (All Frames)
Frame A:
inlknnyknnkyknd*e*kiryyfn*ccwywnrfr*km*igcsfn*ssmercwsstrsqd
len*kf*scpssriiiw*il*w**lyhftyf*rr*ft*t*ysflfryfyypr*swhccl*
ns*ir*flrwctnsissmsii*ksklfiiipkifhfirwc*iri*sc*tnri*tkiity*
w**ec*sr*stignqfie*w*lfpfgcrf---

---fxnxdgsxsspqgxe*sr*sctcnrcrkkrftks*sfl*nrxrysx*iletfrwkkc
nrc*trncpnqi*ksfiqiirciwft*il*sftw*nq*iliki*rcfhh*fr**nlyldr
fkiitk*kensiqscnsilgkq*tl*iysns*sfrkwyksii*nfiicliikhnnnnntf
kksilyhk

Frame B:
li*KTIIKTTNTKMIKNRKLDITSTNVAGIGTDLDKKCRLDAASTEAQWKGVGQAPGLKI
WRIENFKVVPVPESSYGKFYDGDSYIILHTFKEGNSLKHDIHFFLGTFTTQDEAGTAAYK
TVELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGGVESGFNHVKPTEYKPRLLHIS
GDKNAKVAEVPLATSSLNSGDCFLLDAGL---

---XSIXMVVXQVXKEXNKAGEVARAIDAERKGLPKVEVFCETDXDIPXEFWKLLGGKSA
IAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRGKINKSSLKSEDVFIIDLGNEIYTWIG
SKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVLENGTNQSFETLLSA***ntttttths
ksqfciik

Frame C:
*fkkql*kqqiqk*lrien*illqlmllvleqi*iknvdwmqlqlklngkvlvkhqvsrf
gelkilklsqfqnhhmvnsmmvivisfyillkkvihlnmifisf*vlllpkmklalllik
qln*mis*vvhqfnivnvnhmkvqafyhysqnisfyqvvlnqdlimlnqqninqdyyilv
virmlkslkyhwqpvh*ivvtvsfwmqv---

---xqxxw**xksxrkxikpvklhvqsmqkekvyqklkfsvkpixifqxnfgnf*vekvq
sllntklpqpnlkkfytnyqmhlvhlnslkfhvvksinph*nlkmfssli*vmksilgsv
qnhhqmkrkqhsvmqlntw*tinvvnilq*lef*kmvqinhlklyyllnnktqqqqqhiq
kvnfvs*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFA668 (SFA668Q) /CSM/SF/SFA6-C/SFA668Q.Seq.d/ 2077 0.0
VFL329 (VFL329Q) /CSM/VF/VFL3-B/VFL329Q.Seq.d/ 1156 0.0
VFL167 (VFL167Q) /CSM/VF/VFL1-C/VFL167Q.Seq.d/ 1156 0.0
VFI790 (VFI790Q) /CSM/VF/VFI7-D/VFI790Q.Seq.d/ 1156 0.0
VFI559 (VFI559Q) /CSM/VF/VFI5-C/VFI559Q.Seq.d/ 1156 0.0
VFG582 (VFG582Q) /CSM/VF/VFG5-D/VFG582Q.Seq.d/ 1156 0.0
VFG124 (VFG124Q) /CSM/VF/VFG1-A/VFG124Q.Seq.d/ 1156 0.0
VFF756 (VFF756Q) /CSM/VF/VFF7-C/VFF756Q.Seq.d/ 1156 0.0
VFE814 (VFE814Q) /CSM/VF/VFE8-A/VFE814Q.Seq.d/ 1156 0.0
VFE168 (VFE168Q) /CSM/VF/VFE1-C/VFE168Q.Seq.d/ 1156 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J03515|J03515.1 Slime mold (D.discoideum) severin mRNA, complete cds. 1156 0.0 2
U66525|U66525.1 Dictyostelium discoideum ORFveg114 mRNA, complete cds. 100 2e-25 2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.001 29
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 0.016 16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.020 15
AC137821|AC137821.15 Medicago truncatula clone mth2-15o11, WORKING DRAFT SEQUENCE. 42 0.025 4
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 32 0.027 14
AL356915|AL356915.19 Human DNA sequence from clone RP11-179F17 on chromosome 13. 50 0.071 1
BP190606|BP190606.1 Dugesia japonica cDNA, clone: 04979_HH, expressed in the head. 50 0.071 1
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 30 0.082 20
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U70047_1(U70047|pid:none) Physarum polycephalum actin-binding pr... 233 2e-84
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 211 6e-68
FN313917_1(FN313917|pid:none) Schistosoma japonicum isolate Anhu... 167 6e-57
EU334660_1(EU334660|pid:none) Strongylocentrotus purpuratus vill... 180 7e-57
AY814387_1(AY814387|pid:none) Schistosoma japonicum SJCHGC01371 ... 166 1e-55
FN317120_1(FN317120|pid:none) Schistosoma japonicum isolate Anhu... 166 1e-55
FN316954_1(FN316954|pid:none) Schistosoma japonicum isolate Anhu... 165 2e-55
AB071136_1(AB071136|pid:none) Echinococcus multilocularis EmAMP ... 161 2e-51
AE014297_14(AE014297|pid:none) Drosophila melanogaster chromosom... 158 2e-50
(Q07171) RecName: Full=Gelsolin; Flags: Precursor; &AE014297_15... 158 2e-50
protein update 2009. 5.21
PSORT

psg: 0.40 gvh: 0.37 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SFA668 is nuc

5' end seq. ID SFA668F
5' end seq.
>SFA668F.Seq
ATTAATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATT
AGATATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATT
GGATGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGAT
TTGGAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTA
TGATGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGA
TATTCATTTCTTTTTAGGTACTTTTACTACCCAAGATGAAGCTGGCACTGCTGCTTATAA
AACAGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATC
ATATGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGT
TGAATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAG
TGGTGATAAGAATGCTAAAGTCGCTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGG
TGACTGTTTCCTTTTGGATGCAGGTTTA----------
Length of 5' end seq. 628
3' end seq. ID SFA668Z
3' end seq.
>SFA668Z.Seq
----------TTTNTCAATTNNGATGGTAGTAANTCAAGTCCNCAAGGAAANGAATAAAG
CCGGTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTTACCAAAAGTTGAAGTTT
TCTGTGAAACCGATTNCGATATTCCAGNTGAATTTTGGAAACTTTTAGGTGGAAAAAGTG
CAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAAAAGTTTTATACAAATTAT
CAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGGTAAAATCAATAAATCCT
CATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATGAAATCTATACTTGGATCG
GTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTCATGCAACTCAATACTTGG
TAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTTTAGAAAATGGTACAAATC
AATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAACAACAACAACAACACATT
CAAAAAGTCAATTTTGTATCATAAAA
Length of 3' end seq. 556
Connected seq. ID SFA668P
Connected seq.
>SFA668P.Seq
ATTAATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATT
AGATATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATT
GGATGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGAT
TTGGAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTA
TGATGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGA
TATTCATTTCTTTTTAGGTACTTTTACTACCCAAGATGAAGCTGGCACTGCTGCTTATAA
AACAGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATC
ATATGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGT
TGAATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAG
TGGTGATAAGAATGCTAAAGTCGCTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGG
TGACTGTTTCCTTTTGGATGCAGGTTTA----------TTTNTCAATTNNGATGGTAGTA
ANTCAAGTCCNCAAGGAAANGAATAAAGCCGGTGAAGTTGCACGTGCAATCGATGCAGAA
AGAAAAGGTTTACCAAAAGTTGAAGTTTTCTGTGAAACCGATTNCGATATTCCAGNTGAA
TTTTGGAAACTTTTAGGTGGAAAAAGTGCAATCGCTGCTAAACACGAAACTGCCCCAACC
AAATCTGAAAAAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAA
GTTTCACGTGGTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGAT
TTAGGTAATGAAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACA
GCATTCAGTCATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATA
GTTAGAGTTTTAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAA
TAAAACACAACAACAACAACAACACATTCAAAAAGTCAATTTTGTATCATAAAA
Length of connected seq. 1184
Full length Seq ID -
Full length Seq. -
Length of full length seq. -