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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFA575
Library SF
(Link to library)
Clone ID SFA575
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15784-1
Original site URL
Representative seq. ID SFA575F
(Link to Original site)
Representative DNA sequence 
>SFA575 (SFA575Q) /CSM/SF/SFA5-D/SFA575Q.Seq.d/
ACTGTTGGCCTACTGGCTCAACAACCTCAACAGCAACAACCTTCACAATCTCAACAACAA
ATACCTCAACAGCAAACACAATCACAACAAAATAAAGTTGGGTTAACATCACCATTAATA
TCATCTACTAATCCTTCAAATGTAAATAAAAGTCCAATCACAATTTCTATTCCAAGATTT
AAAAAAAATCCAAATACTCCAAATATGACATCTTCTCAACAATCTCAACAACAACAGCCA
CCACCTTTACAACAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
TVGLLAQQPQQQQPSQSQQQIPQQQTQSQQNKVGLTSPLISSTNPSNVNKSPITISIPRF
KKNPNTPNMTSSQQSQQQQPPPLQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLAQQPQQQQPSQSQQQIPQQQTQSQQNKVGLTSPLISSTNPSNVNKSPITISIPRF
KKNPNTPNMTSSQQSQQQQPPPLQ---


Frame B:
llaywlnnlnsnnlhnlnnkylnskhnhnkiklg*hhh*yhllilqm*ikvqsqflfqdl
kkiqilqi*hllnnlnnnshhlyn---


Frame C:
cwptgsttstattftisttntstantittk*swvnitiniiy*sfkck*ksnhnfyski*
kkskyskydifstistttattft---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA575 (SFA575Q) /CSM/SF/SFA5-D/SFA575Q.Seq.d/                        272   2e-72
SFH670 (SFH670Q) /CSM/SF/SFH6-C/SFH670Q.Seq.d/                        264   6e-70
AHP437 (AHP437Q) /CSM/AH/AHP4-B/AHP437Q.Seq.d/                        264   6e-70
AHN706 (AHN706Q) /CSM/AH/AHN7-A/AHN706Q.Seq.d/                        264   6e-70
AHM794 (AHM794Q) /CSM/AH/AHM7-D/AHM794Q.Seq.d/                        264   6e-70
AHP171 (AHP171Q) /CSM/AH/AHP1-C/AHP171Q.Seq.d/                        254   6e-67
AHN307 (AHN307Q) /CSM/AH/AHN3-A/AHN307Q.Seq.d/                        206   1e-52
SFL104 (SFL104Q) /CSM/SF/SFL1-A/SFL104Q.Seq.d/                         44   0.001
VFM382 (VFM382Q) /CSM/VF/VFM3-D/VFM382Q.Seq.d/                         42   0.004
VFC112 (VFC112Q) /CSM/VF/VFC1-A/VFC112Q.Seq.d/                         42   0.004
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   172   2e-70  6
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    32   0.001  5
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   0.004  6
CB014921|CB014921.1 As_tgz_87C04_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_87C04 5', mRNA sequence.    40   0.009  2
BM278684|BM278684.1 As_tgz_65H08_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_65H08 5', mRNA sequence.    40   0.009  2
CB013972|CB013972.1 As_tgz_72F05_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_72F05 5', mRNA sequence.    40   0.009  2
BM278019|BM278019.1 As_tgz_52A06_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_52A06 5', mRNA sequence.    40   0.009  2
BF169345|BF169345.1 As_tgz_24B05_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_24B05 5', mRNA sequence.    40   0.009  2
BF049985|BF049985.1 As_tgz_20E10_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_20E10 5', mRNA sequence.    40   0.010  2
BM278520|BM278520.1 As_tgz_62C11_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_62C11 5', mRNA sequence.    42   0.010  2
dna update 2003.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_92(AC116979|pid:none) Dictyostelium discoideum chromoso...    84   1e-15
protein update 2009. 1. 5
PSORT 

 psg: 0.79  gvh: 0.54  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.59  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for SFA575 is mit
5' end seq. ID SFA575F
5' end seq. 
>SFA575F.Seq
ACTGTTGGCCTACTGGCTCAACAACCTCAACAGCAACAACCTTCACAATCTCAACAACAA
ATACCTCAACAGCAAACACAATCACAACAAAATAAAGTTGGGTTAACATCACCATTAATA
TCATCTACTAATCCTTCAAATGTAAATAAAAGTCCAATCACAATTTCTATTCCAAGATTT
AAAAAAAATCCAAATACTCCAAATATGACATCTTCTCAACAATCTCAACAACAACAGCCA
CCACCTTTACAACA----------
Length of 5' end seq. 254
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -