>SFA466 (SFA466Q) /CSM/SF/SFA4-C/SFA466Q.Seq.d/
XXXXXXXXXXACNCCAACACCAACNACAACTACAACTACAACTACAACACCAAAACCAAC
AACTANCTACTACCACCACTTCCACAACAACACCAACCAAAACATCAACCAATACCAATG
ATAAACCAGGTATTTTTGAAACAGTGGGAGGTGGAAGTGGAAAAGTTGCAGATGCTCTTA
ACCCTATTAGGATTGTTACAGGAGGTGCCATTTTCTCAGATACAATGGAAAAAATTGGAG
GTGGAAGTGGTAAATTGGCTGACGAGGGTGTTGAAGCTGTCGGATCAGGTATTAGTAATT
TTGCACAATCAGTTGGTATTATTCCTAAAAAACAAGAACCAAAAAAAGATGAAAATAATA
AACAAAGTAATAATAATAATAATAATA

---XQHQXQLQLQLQHQNQQLXTTTTSTTTPTKTSTNTNDKPGIFETVGGGSGKVADALN
PIRIVTGGAIFSDTMEKIGGGSGKLADEGVEAVGSGISNFAQSVGIIPKKQEPKKDENNK
QSNNNNNN

Frame A:
---XQHQXQLQLQLQHQNQQLXTTTTSTTTPTKTSTNTNDKPGIFETVGGGSGKVADALN
PIRIVTGGAIFSDTMEKIGGGSGKLADEGVEAVGSGISNFAQSVGIIPKKQEPKKDENNK
QSNNNNNN


Frame B:
---xntnxnynynyntktnnxllpplpqqhqpkhqpipminqvflkqweveveklqmllt
llgllqevpfsqiqwkklevevvnwltrvlklsdqvlvilhnqlvlflknknqkkmkiin
kviiiiii


Frame C:
---ptptttttttttpkpttxyyhhfhnntnqninqyq**tryf*nsgrwkwkscrcs*p
y*dcyrrchflryngknwrwkw*ig*rgc*scriry**fctiswyys*ktrtkkr*k**t
k******

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG844 (SFG844Q) /CSM/SF/SFG8-B/SFG844Q.Seq.d/                        452   e-126
SFA466 (SFA466Q) /CSM/SF/SFA4-C/SFA466Q.Seq.d/                        452   e-126
CFH875 (CFH875Q) /CSM/CF/CFH8-D/CFH875Q.Seq.d/                        452   e-126
AFK223 (AFK223Q) /CSM/AF/AFK2-A/AFK223Q.Seq.d/                        442   e-123
SFC374 (SFC374Q) /CSM/SF/SFC3-D/SFC374Q.Seq.d/                        438   e-122
SFG133 (SFG133Q) /CSM/SF/SFG1-B/SFG133Q.Seq.d/                        430   e-120
CHC120 (CHC120Q) /CSM/CH/CHC1-A/CHC120Q.Seq.d/                        416   e-115
SFK618 (SFK618Q) /CSM/SF/SFK6-A/SFK618Q.Seq.d/                        414   e-115
CFD230 (CFD230Q) /CSM/CF/CFD2-B/CFD230Q.Seq.d/                        398   e-110
SFE150 (SFE150Q) /CSM/SF/SFE1-C/SFE150Q.Seq.d/                        392   e-108

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ978732|BQ978732.1 QHI6B19.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHI6B19, mRNA sequence.    38   0.79   2
AC126408|AC126408.3 Mus musculus clone RP23-216P14, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42   2.5    4
AL845494|AL845494.3 Mouse DNA sequence from clone RP23-330D3 on chromosome 2.    36   2.7    3
BQ104153|BQ104153.1 fc2126.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc2126.e 5', mRNA sequence.    36   3.7    2
BQ106035|BQ106035.1 fc2334.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc2334.e 5', mRNA sequence.    36   3.8    2
BQ103994|BQ103994.1 gg0614.e Rose Petals (Golden Gate) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone gg0614.e 5', mRNA sequence.    36   3.9    2
CF349561|CF349561.1 fc2713.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc2713.e 5', mRNA sequence.    36   4.9    2
AC133205|AC133205.2 Mus musculus chromosome UNK clone RP23-108P11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   5.4    1
AC120686|AC120686.3 Rattus norvegicus clone CH230-9N15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    40   8.4    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_7948(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    37   0.16
EF670006_1(EF670006|pid:none) Saccharomyces cerevisiae strain Si...    37   0.21
AM494959_98(AM494959|pid:none) Leishmania braziliensis chromosom...    36   0.35
AK298509_1(AK298509|pid:none) Homo sapiens cDNA FLJ58109 partial...    35   0.61
AP008217_1406(AP008217|pid:none) Oryza sativa (japonica cultivar...    35   0.61
CP001337_3104(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    35   0.61
M16165_1(M16165|pid:none) Yeast (S.cerevisiae) S1 protein gene, ...    35   0.79
BC123957_1(BC123957|pid:none) Xenopus tropicalis hypothetical pr...    35   0.79
AK132734_1(AK132734|pid:none) Mus musculus adult male testis cDN...    35   1.0
AL645684_4(AL645684|pid:none) Mouse DNA sequence from clone RP23...    35   1.0

 psg: 0.85  gvh: 0.32  alm: 0.43  top: 0.47  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SFA466 is cyt

>SFA466Z.Seq
----------ACNCCAACACCAACNACAACTACAACTACAACTACAACACCAAAACCAAC
AACTANCTACTACCACCACTTCCACAACAACACCAACCAAAACATCAACCAATACCAATG
ATAAACCAGGTATTTTTGAAACAGTGGGAGGTGGAAGTGGAAAAGTTGCAGATGCTCTTA
ACCCTATTAGGATTGTTACAGGAGGTGCCATTTTCTCAGATACAATGGAAAAAATTGGAG
GTGGAAGTGGTAAATTGGCTGACGAGGGTGTTGAAGCTGTCGGATCAGGTATTAGTAATT
TTGCACAATCAGTTGGTATTATTCCTAAAAAACAAGAACCAAAAAAAGATGAAAATAATA
AACAAAGTAATAATAATAATAATAATA