SFA447
Library SF
(Link to library)
Clone ID SFA447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16245-1
Original site URL
Representative seq. ID SFA447P
(Link to Original site)
Representative DNA sequence
>SFA447 (SFA447Q) /CSM/SF/SFA4-B/SFA447Q.Seq.d/
CTGTTGGCCTACTGGNATTTTTCTTTTGTTTAAAACATAAAAAGNCATATATGGAAAAAG
TTTCAGAAAGGAATTAAAAATTCTTTATTTGTACCAATAGGATAATAATAATATGCAAGG
ATTCAATAAATTCAAATGAAGTTAGTGGTTAAGTAGCAACTTTATTTGCAAATGTACCAT
TAGGACCAGTAGATCCAATTTTAGGTGTTTCAACAGCTTTCAAAGCAGACACTGACCCAA
GGAAAAGTAGATACATCAGTTGGAGCATATAGAGATGAAAATGGTAAACCATACGTATTG
AAATGTGTATTTGAAGCAGAGAAAAGATTATTGGGAGCACCAAAAGAGTATCTCCCAATC
GATGGTATTCCAGAGTTCAATAAATTATCAGCCAAACTTTTATATGGAGATGCAATGGTT
GGCAAAGAGAAGAGAATGGTAACAGTTCAAGCATTGTCAGGTACCGGTGCATTACGTATT
GGTATCATTTTCATTCGTXXXXXXXXXXGATGTTCTCTGCTCAATCATACTCCAAGAACT
TCGGTCTCTATGGTGAAAGAACTGGTGCCCTCACCATTGTTTCTCATCGTGAAGATGTAA
TTCCAAAGATGTTATCTCAACTCAAAATGGATATCCGTGCAATGTACTCCTCCCCACCAA
CCCATGGTGCTCGTCTCGTCACCACCGTTCTCTCTGACCCAGAATTAACTGCACTTTGGG
TCAAAGAACTTAAAGAAATGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAGATG
CTCTCATCGCCCGTAAAGTACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTATGT
TCACCTATACAGGTTTAACCAAACCACAAGTTGATATCCTTGTAAATAAATATCATATTT
ATCCTTTAGGTAGTGGTAGAGTTTCTTAGCNGGTTTAAATAATAAAAATATAGATTATTT
GCTGA
sequence update 2001. 6. 1
Translated Amino Acid sequence
llaywxfsfv*nikxhiwkkfqkgiknslfvpig***yariq*iqmklvvk*qlylqmyh
*dq*iqf*VFQQLSKQTLTQGKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAPKEYLPI
DGIPEFNKLSAKLLYGDAMVGKEKRMVTVQALSGTGALRIGIIFIR---

---MFSAQSYSKNFGLYGERTGALTIVSHREDVIPKMLSQLKMDIRAMYSSPPTHGARLV
TTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGMFTYTGLT
KPQVDILVNKYHIYPLGSGRVS*xv*iiki*iic*


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxfsfv*nikxhiwkkfqkgiknslfvpig***yariq*iqmklvvk*qlylqmyh
*dq*iqf*VFQQLSKQTLTQGKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAPKEYLPI
DGIPEFNKLSAKLLYGDAMVGKEKRMVTVQALSGTGALRIGIIFIR---

---dvlcsiilqelrslw*knwcphhcfss*rcnskdvistqngypcnvllptnpwcssr
hhrsl*princtlgqrt*rnvw*nqrcsskgfrcshrp*str*lgtyrqsnwyvhlyrfn
qtts*ypck*isylsfr*w*sflaglnnknidyll

Frame B:
cwptgifllfkt*kxiygksfrkelkilylyq*dnnnmqgfnkfk*s*wlssnfickcti
rtsrsnfrcfnsfqsrh*pkek*ihqlehiemkmvnhty*nvylkqrkdywehqksisqs
mvfqssinyqpnfymemqwlakrrew*qfkhcqvpvhyvlvsfsf---

---MFSAQSYSKNFGLYGERTGALTIVSHREDVIPKMLSQLKMDIRAMYSSPPTHGARLV
TTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGMFTYTGLT
KPQVDILVNKYHIYPLGSGRVS*xv*iiki*iic*

Frame C:
vgllxfffclkhkkxymekvsern*kffictnriiiickdsinsnevsg*vatlfanvpl
gpvdpilgvstafkadtdprksryiswsi*r*kw*tiriemci*srekiigstkrvspnr
wysrvq*iisqtfiwrcngwqreengnsssivryrcitywyhfhs---

---csllnhtprtsvsmvkelvpsplflivkm*fqrcylnskwisvqctpphqpmvlvss
ppfsltqn*lhfgsknlkkclveskmfvkrf*mlsspvkyqvignissiklvcspiqv*p
nhklisl*iniifil*vvveflsxfk**kyrlfa

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFA447 (SFA447Q) /CSM/SF/SFA4-B/SFA447Q.Seq.d/ 1836 0.0
VFM103 (VFM103Q) /CSM/VF/VFM1-A/VFM103Q.Seq.d/ 890 0.0
VFN155 (VFN155Q) /CSM/VF/VFN1-C/VFN155Q.Seq.d/ 872 0.0
VFM818 (VFM818Q) /CSM/VF/VFM8-A/VFM818Q.Seq.d/ 872 0.0
VFJ761 (VFJ761Q) /CSM/VF/VFJ7-C/VFJ761Q.Seq.d/ 872 0.0
SFI835 (SFI835Q) /CSM/SF/SFI8-B/SFI835Q.Seq.d/ 872 0.0
SFH437 (SFH437Q) /CSM/SF/SFH4-B/SFH437Q.Seq.d/ 872 0.0
SFG206 (SFG206Q) /CSM/SF/SFG2-A/SFG206Q.Seq.d/ 872 0.0
SFG113 (SFG113Q) /CSM/SF/SFG1-A/SFG113Q.Seq.d/ 872 0.0
SFF233 (SFF233Q) /CSM/SF/SFF2-B/SFF233Q.Seq.d/ 872 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 6e-05 20
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 40 4e-04 18
AP003185|AP003185.1 Clostridium perfringens DNA, complete genome, section 1/10. 42 0.002 11
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 32 0.002 16
AU001466|AU001466.1 Bombyx mori cDNA, clone fbm0460f. 54 0.004 1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.007 18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 0.011 12
AC141427|AC141427.2 Mus musculus chromosome UNK clone RP23-100O21, WORKING DRAFT SEQUENCE, 4 unordered pieces. 34 0.013 10
BX005248|BX005248.13 Zebrafish DNA sequence from clone CH211-155H12 in linkage group 8. 52 0.015 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 0.018 12
dna update 2003.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54SF7) RecName: Full=Aspartate aminotransferase, cytoplasmic; ... 276 4e-74
(P28011) RecName: Full=Aspartate aminotransferase 1; EC... 156 8e-37
X61577_1(X61577|pid:none) M.sativa aat-1 mRNA for aspartate amin... 156 8e-37
AY128343_1(AY128343|pid:none) Arabidopsis thaliana aspartate ami... 156 8e-37
EF676186_1(EF676186|pid:none) Picea sitchensis clone WS02717_N16... 151 3e-35
BT071434_1(BT071434|pid:none) Picea sitchensis clone WS02911_N16... 151 3e-35
L23875_1(L23875|pid:none) Lupinus angustifolius aspartate aminot... 150 5e-35
BT040760_1(BT040760|pid:none) Zea mays full-length cDNA clone ZM... 150 6e-35
AF034210_2(AF034210|pid:none) Glycine max aspartate aminotransfe... 150 8e-35
(P37833) RecName: Full=Aspartate aminotransferase, cytoplasmic; ... 150 8e-35
protein update 2009. 5.21
PSORT

psg: 0.67 gvh: 0.41 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
28.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SFA447 is cyt

5' end seq. ID SFA447F
5' end seq.
>SFA447F.Seq
CTGTTGGCCTACTGGNATTTTTCTTTTGTTTAAAACATAAAAAGNCATATATGGAAAAAG
TTTCAGAAAGGAATTAAAAATTCTTTATTTGTACCAATAGGATAATAATAATATGCAAGG
ATTCAATAAATTCAAATGAAGTTAGTGGTTAAGTAGCAACTTTATTTGCAAATGTACCAT
TAGGACCAGTAGATCCAATTTTAGGTGTTTCAACAGCTTTCAAAGCAGACACTGACCCAA
GGAAAAGTAGATACATCAGTTGGAGCATATAGAGATGAAAATGGTAAACCATACGTATTG
AAATGTGTATTTGAAGCAGAGAAAAGATTATTGGGAGCACCAAAAGAGTATCTCCCAATC
GATGGTATTCCAGAGTTCAATAAATTATCAGCCAAACTTTTATATGGAGATGCAATGGTT
GGCAAAGAGAAGAGAATGGTAACAGTTCAAGCATTGTCAGGTACCGGTGCATTACGTATT
GGTATCATTTTCATTCGT----------
Length of 5' end seq. 498
3' end seq. ID SFA447Z
3' end seq.
>SFA447Z.Seq
----------GATGTTCTCTGCTCAATCATACTCCAAGAACTTCGGTCTCTATGGTGAAA
GAACTGGTGCCCTCACCATTGTTTCTCATCGTGAAGATGTAATTCCAAAGATGTTATCTC
AACTCAAAATGGATATCCGTGCAATGTACTCCTCCCCACCAACCCATGGTGCTCGTCTCG
TCACCACCGTTCTCTCTGACCCAGAATTAACTGCACTTTGGGTCAAAGAACTTAAAGAAA
TGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAGATGCTCTCATCGCCCGTAAAG
TACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTATGTTCACCTATACAGGTTTAA
CCAAACCACAAGTTGATATCCTTGTAAATAAATATCATATTTATCCTTTAGGTAGTGGTA
GAGTTTCTTAGCNGGTTTAAATAATAAAAATATAGATTATTTGCTGA
Length of 3' end seq. 457
Connected seq. ID SFA447P
Connected seq.
>SFA447P.Seq
CTGTTGGCCTACTGGNATTTTTCTTTTGTTTAAAACATAAAAAGNCATATATGGAAAAAG
TTTCAGAAAGGAATTAAAAATTCTTTATTTGTACCAATAGGATAATAATAATATGCAAGG
ATTCAATAAATTCAAATGAAGTTAGTGGTTAAGTAGCAACTTTATTTGCAAATGTACCAT
TAGGACCAGTAGATCCAATTTTAGGTGTTTCAACAGCTTTCAAAGCAGACACTGACCCAA
GGAAAAGTAGATACATCAGTTGGAGCATATAGAGATGAAAATGGTAAACCATACGTATTG
AAATGTGTATTTGAAGCAGAGAAAAGATTATTGGGAGCACCAAAAGAGTATCTCCCAATC
GATGGTATTCCAGAGTTCAATAAATTATCAGCCAAACTTTTATATGGAGATGCAATGGTT
GGCAAAGAGAAGAGAATGGTAACAGTTCAAGCATTGTCAGGTACCGGTGCATTACGTATT
GGTATCATTTTCATTCGT----------GATGTTCTCTGCTCAATCATACTCCAAGAACT
TCGGTCTCTATGGTGAAAGAACTGGTGCCCTCACCATTGTTTCTCATCGTGAAGATGTAA
TTCCAAAGATGTTATCTCAACTCAAAATGGATATCCGTGCAATGTACTCCTCCCCACCAA
CCCATGGTGCTCGTCTCGTCACCACCGTTCTCTCTGACCCAGAATTAACTGCACTTTGGG
TCAAAGAACTTAAAGAAATGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAGATG
CTCTCATCGCCCGTAAAGTACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTATGT
TCACCTATACAGGTTTAACCAAACCACAAGTTGATATCCTTGTAAATAAATATCATATTT
ATCCTTTAGGTAGTGGTAGAGTTTCTTAGCNGGTTTAAATAATAAAAATATAGATTATTT
GCTGA
Length of connected seq. 955
Full length Seq ID -
Full length Seq. -
Length of full length seq. -