>AFH777 (AFH777Q) /CSM/AF/AFH7-D/AFH777Q.Seq.d/
AATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATT
TTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAAT
ATTTGTTTTTTTTTTTTTTTNAAAANGGGGGGXXXXXXXXXXATAATAATACACCTCTTG
GTGGATCAATACCAATTTGTTTATATAAATTATGATGAGTTAATGGTAATTCTACAGCTT
CACGCATTTCTTGTTTTTGAATATCNCCNCCACCAATATCAGAGTAACTTTNTGATGGTT
TTTCATCAGCACCCAAAAGATGAATACTTGAATCTGATTCTGGTGGTAAAGTGTCAACCA
ATGCATTTGAGTGTCTTTGTAAGGCCACAGAGGCTGATGGTTTTAAAAGTTCTCTATCAA
TTGTACTTAAAATTCTTACACATAATGTTGATCCTGATGTCGATTGAACAATACCAGTAT
TTGAATCAACCATCTCTAATAATTGACCAATTAATAATGGTACGGATCTAATACGTTTAA
CTTCTTCTTGAGCATGTAATAACTCTCNNTNTAAGTTTTTATANTCATATTTAATANATT
CCTCTTGAATACCGAAAAAATCTAATNTACTTTCTAACCTTTTCANTTTTTGATATAAAT
CTGCTTCNCGATGATGTGAAGCTTACTTCTTGNTACTGTAAC

iflifnffiyihkylflflfffiifqhnni*l*FGINSVIFVFFFFXKXG---

---IIIHLLVDQYQFVYINYDELMVILQLHAFLVFEYXXHQYQSNFXMVFHQHPKDEYLN
LILVVKCQPMHLSVFVRPQRLMVLKVLYQLYLKFLHIMLILMSIEQYQYLNQPSLIIDQL
IMVRI*yv*lllehvitlxxsfyxhi*xipleyrknlxyfltfsxfdinllxddvkltsx
ycn

Frame A:
nfsnf*ffyiyt*ififififfynfpt*qyliiiwy**cnicffffxkxg---

---IIIHLLVDQYQFVYINYDELMVILQLHAFLVFEYXXHQYQSNFXMVFHQHPKDEYLN
LILVVKCQPMHLSVFVRPQRLMVLKVLYQLYLKFLHIMLILMSIEQYQYLNQPSLIIDQL
IMVRI*yv*lllehvitlxxsfyxhi*xipleyrknlxyfltfsxfdinllxddvkltsx
ycn

Frame B:
iflifnffiyihkylflflfffiifqhnni*l*FGINSVIFVFFFFXKXG---

---**ytswwintnlfi*imms*w*fysfthflflnixxtnirvtx*wffistqkmnt*i
*fww*svnqci*vsl*ghrg*wf*kfsinct*nsyt*c*s*crlnntsi*inhl**ltn*
*wygsntfnfflsm**lsx*vfixifnxfllnteki*xtf*pfxfli*icfxmm*slllx
tv

Frame C:
ff*fliflyiyiniyfyfyffl*fsnitisnynlvliv*ylfffffxxgg---

---nntplggsipiclykl**vngnstasriscf*ispppise*lxdgfssapkr*iles
dsggkvstnafeclckateadgfksslsivlkilthnvdpdvd*tipvfestisnn*pin
ngtdlirltss*acnnsxxkflxsylixss*ipkksnxlsnlfxf*yksasr*ceayflx
l*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFH777 (AFH777Q) /CSM/AF/AFH7-D/AFH777Q.Seq.d/                        999   0.0
AFM275 (AFM275Q) /CSM/AF/AFM2-D/AFM275Q.Seq.d/                        932   0.0
CFI392 (CFI392Q) /CSM/CF/CFI3-D/CFI392Q.Seq.d/                        898   0.0
AFO426 (AFO426Q) /CSM/AF/AFO4-B/AFO426Q.Seq.d/                        888   0.0
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/                        878   0.0
CFK182 (CFK182Q) /CSM/CF/CFK1-D/CFK182Q.Seq.d/                        872   0.0
AFC465 (AFC465Q) /CSM/AF/AFC4-C/AFC465Q.Seq.d/                        821   0.0
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/                        803   0.0
VFH717 (VFH717Q) /CSM/VF/VFH7-A/VFH717Q.Seq.d/                        793   0.0
AFD357 (AFD357Q) /CSM/AF/AFD3-C/AFD357Q.Seq.d/                        507   e-143

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L16578|L16578.1 Dictyostelium discoideum HIV1 TAT-binding protein homologous protein mRNA, complete cds.   946   0.0    2
BI514776|BI514776.1 BB160016A20F11 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160016A20F11 5', mRNA sequence.    64   2e-25  5
CN558414|CN558414.1 tad72a04.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to TR:Q9V405 Q9V405 RPT3 PROTEIN. ;, mRNA sequence.    62   1e-23  4
BI515792|BI515792.1 BB160020B10B01 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B10B01 5', mRNA sequence.    52   1e-22  5
BI514764|BI514764.1 BB160016A20E08 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160016A20E08 5', mRNA sequence.    52   3e-22  5
BP506187|BP506187.1 Hydra magnipapillata cDNA, clone:hm_04303.     62   4e-21  4
CN586822|CN586822.1 USDA-FP_129894 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP090_C10, mRNA sequence.    50   2e-19  5
CN586001|CN586001.1 USDA-FP_129073 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP080_A07, mRNA sequence.    50   4e-19  5
CD421293|CD421293.1 ku81h04.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:PRS6_CAEEL P46502 PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B. [1] ;, mRNA sequence.    64   2e-18  2
BH130703|BH130703.1 ENTNA60TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    66   3e-17  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK071476_1(AK071476|pid:none) Oryza sativa Japonica Group cDNA c...   237   3e-61
AY809918_1(AY809918|pid:none) Schistosoma japonicum SJCHGC05874 ...   235   8e-61
EF147477_1(EF147477|pid:none) Populus trichocarpa clone WS01231_...   235   1e-60
EF148658_1(EF148658|pid:none) Populus trichocarpa x Populus delt...   235   1e-60
EF103413_1(EF103413|pid:none) Haliotis discus discus 26S proteas...   234   2e-60
AC147002_2(AC147002|pid:none) Medicago truncatula clone mth2-151...   234   2e-60
AE014298_1620(AE014298|pid:none) Drosophila melanogaster chromos...   233   3e-60
FB781798_1(FB781798|pid:none) Sequence 1071 from Patent WO200803...   233   5e-60
BC060362_1(BC060362|pid:none) Xenopus laevis proteasome 26S ATPa...   232   7e-60
(P46507) RecName: Full=26S protease regulatory subunit 6B; AltNa...   232   9e-60

 psg: 1.03  gvh: 0.43  alm: 0.27  top: 0.50  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for AFH777 is end

>AFH777F.Seq
AATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATT
TTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAAT
ATTTGTTTTTTTTTTTTTTTNAAAANGGGGGG----------

>AFH777Z.Seq
----------ATAATAATACACCTCTTGGTGGATCAATACCAATTTGTTTATATAAATTA
TGATGAGTTAATGGTAATTCTACAGCTTCACGCATTTCTTGTTTTTGAATATCNCCNCCA
CCAATATCAGAGTAACTTTNTGATGGTTTTTCATCAGCACCCAAAAGATGAATACTTGAA
TCTGATTCTGGTGGTAAAGTGTCAACCAATGCATTTGAGTGTCTTTGTAAGGCCACAGAG
GCTGATGGTTTTAAAAGTTCTCTATCAATTGTACTTAAAATTCTTACACATAATGTTGAT
CCTGATGTCGATTGAACAATACCAGTATTTGAATCAACCATCTCTAATAATTGACCAATT
AATAATGGTACGGATCTAATACGTTTAACTTCTTCTTGAGCATGTAATAACTCTCNNTNT
AAGTTTTTATANTCATATTTAATANATTCCTCTTGAATACCGAAAAAATCTAATNTACTT
TCTAACCTTTTCANTTTTTGATATAAATCTGCTTCNCGATGATGTGAAGCTTACTTCTTG
NTACTGTAAC

>AFH777P.Seq
AATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATT
TTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAAT
ATTTGTTTTTTTTTTTTTTTNAAAANGGGGGG----------ATAATAATACACCTCTTG
GTGGATCAATACCAATTTGTTTATATAAATTATGATGAGTTAATGGTAATTCTACAGCTT
CACGCATTTCTTGTTTTTGAATATCNCCNCCACCAATATCAGAGTAACTTTNTGATGGTT
TTTCATCAGCACCCAAAAGATGAATACTTGAATCTGATTCTGGTGGTAAAGTGTCAACCA
ATGCATTTGAGTGTCTTTGTAAGGCCACAGAGGCTGATGGTTTTAAAAGTTCTCTATCAA
TTGTACTTAAAATTCTTACACATAATGTTGATCCTGATGTCGATTGAACAATACCAGTAT
TTGAATCAACCATCTCTAATAATTGACCAATTAATAATGGTACGGATCTAATACGTTTAA
CTTCTTCTTGAGCATGTAATAACTCTCNNTNTAAGTTTTTATANTCATATTTAATANATT
CCTCTTGAATACCGAAAAAATCTAATNTACTTTCTAACCTTTTCANTTTTTGATATAAAT
CTGCTTCNCGATGATGTGAAGCTTACTTCTTGNTACTGTAAC