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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFA259
Library SF
(Link to library)
Clone ID SFA259
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14174-1
Original site URL
Representative seq. ID SFA259P
(Link to Original site)
Representative DNA sequence 
>SFA259 (SFA259Q) /CSM/SF/SFA2-C/SFA259Q.Seq.d/
ACTGTTGGCCTACTGGATTTTTATTTTTTCCAAAACCCCTTAACAAATAATAATTAAATA
AAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTTGAAAATAGAGAGGATGG
ACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTACCATGGAGTAAGAATAC
AATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGATGAATATACATTCAAAAT
CTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAATCGTAAAGGTAAAACCAT
CTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTTTTCAAACCTAAAAAGGT
TTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGATGATATTGACGAGGAGGA
TGACGACGGTAAACCXXXXXXXXXXCAACAAACTGCCAACACTACTACCAACACTACCAC
CACCACCAATACAGTACCAAAGGTAACATCATCAACTGTTATTTTTAATTCAACACCAAC
TAAAAAACCAACTACTAAAACATTGAAATTAAAAGAAGAATTCCAATGTTCACCAATGGA
TGCATATGATGTATTTGTAAACATTAATAAATTAAGAGCATTCACTCAAAGTGATTGTAC
TTTTGAAAATGAAGAAGGCGGTAAATTTTCATTATATGGTGGTAGTATTCAAGGTGTAAA
TAAAACTTTATCACCAGGCTCAAAGATTGTTCAAACTTGGAGATTGGATAATTGGAGTAA
AGGTGTCGAATCTCAAGTTACCATTACATTCAGTGTTGATGGTAAACCTTTAACAAATGT
TGAAATCGTTCAAACTGGAATTCCAATTGACGAGTTTGAAAAAACTGAAGAAGGTTGGAA
GAGAAATATTTTAGATCGTATAAAACATACTTTTNCTTANNCTNCTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywififsktp*qiiik*KMAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNT
IGGLFDKKVIQETDEYTFKISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKV
LPPPPTTKSKGAADDIDEEDDDGK---

---QQTANTTTNTTTTTNTVPKVTSSTVIFNSTPTKKPTTKTLKLKEEFQCSPMDAYDVF
VNINKLRAFTQSDCTFENEEGGKFSLYGGSIQGVNKTLSPGSKIVQTWRLDNWSKGVESQ
VTITFSVDGKPLTNVEIVQTGIPIDEFEKTEEGWKRNILDRIKHTFXXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglldfyffqnpltnnn*ikngksrrr*pkmdc*k*rgwt*c*wlalvrerlftme*ey
nwwiir*kgysrnr*iyiqnlinsscfr*mysk*s*r*nhlfi*trc*nelgsrfqt*kg
fttttnh*i*rrcr*y*rgg*rr*t---

---QQTANTTTNTTTTTNTVPKVTSSTVIFNSTPTKKPTTKTLKLKEEFQCSPMDAYDVF
VNINKLRAFTQSDCTFENEEGGKFSLYGGSIQGVNKTLSPGSKIVQTWRLDNWSKGVESQ
VTITFSVDGKPLTNVEIVQTGIPIDEFEKTEEGWKRNILDRIKHTFXXXX

Frame B:
llaywififsktp*qiiik*KMAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNT
IGGLFDKKVIQETDEYTFKISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKV
LPPPPTTKSKGAADDIDEEDDDGK---

---nklptllptlppppiqyqr*hhqllfliqhqlknqllkh*n*kknsnvhqwmhmmyl
*tlin*ehslkvivllkmkkavnfhymvvvfkv*iklyhqaqrlfklgdwiigvkvsnlk
lplhsvlmvnl*qmlksfklefqltslkklkkvgreif*iv*nilxlxll

Frame C:
cwptgflffpkplnk**lnkkwqk*ekvtqdgllkiermdimlmvgigqrkivyhgvriq
lvdysikrlfkkqmnihskshqlqlfqvnvqqiivkvkpsfymn*mlk*igksfsnlkrf
yhhhqplnlkalqmiltrrmttvn---

---tncqhyyqhyhhhqystkgniincyf*fntn*ktny*nieikrripmftngci*cic
kh**iksihsk*lyf*k*rrr*ifiiww*ysrck*nfitrlkdcsnleig*le*rcriss
yhyiqc*w*tfnkc*nrsnwnsn*rv*kn*rrleekyfrsyktyfxlxx*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA259 (SFA259Q) /CSM/SF/SFA2-C/SFA259Q.Seq.d/                       1739   0.0
VSE635 (VSE635Q) /CSM/VS/VSE6-B/VSE635Q.Seq.d/                        973   0.0
SFJ442 (SFJ442Q) /CSM/SF/SFJ4-B/SFJ442Q.Seq.d/                        973   0.0
SFB723 (SFB723Q) /CSM/SF/SFB7-A/SFB723Q.Seq.d/                        973   0.0
SFB627 (SFB627Q) /CSM/SF/SFB6-B/SFB627Q.Seq.d/                        973   0.0
CFI695 (CFI695Q) /CSM/CF/CFI6-D/CFI695Q.Seq.d/                        969   0.0
SFI360 (SFI360Q) /CSM/SF/SFI3-C/SFI360Q.Seq.d/                        965   0.0
CFC223 (CFC223Q) /CSM/CF/CFC2-A/CFC223Q.Seq.d/                        965   0.0
SFG774 (SFG774Q) /CSM/SF/SFG7-D/SFG774Q.Seq.d/                        955   0.0
SLG502 (SLG502Q) /CSM/SL/SLG5-A/SLG502Q.Seq.d/                        954   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   5e-11  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   4e-09  21
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   6e-07  18
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    38   7e-07  9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    42   6e-06  16
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   9e-06  16
AC007767|AC007767.3 Arabidopsis thaliana chromosome 1 BAC F5D14 sequence, complete sequence.    36   1e-05  9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   1e-04  18
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   1e-04  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   4e-04  11
dna update 2003.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DB6) RecName: Full=Activator of 90 kDa heat shock protein AT...   268   1e-70
AB158647_1(AB158647|pid:none) Bombyx mori Bm44, Bm44 mRNA for Bm...   105   3e-21
BC081343_1(BC081343|pid:none) Xenopus tropicalis MGC89589 protei...   100   7e-20
AE014134_3649(AE014134|pid:none) Drosophila melanogaster chromos...   100   1e-19
AK093945_1(AK093945|pid:none) Mus musculus cDNA fis, clone TRACH...   100   1e-19
FN315349_1(FN315349|pid:none) Schistosoma japonicum isolate Anhu...    98   3e-19
AY815067_1(AY815067|pid:none) Schistosoma japonicum SJCHGC01423 ...    98   3e-19
BC041491_1(BC041491|pid:none) Xenopus laevis activator of heat s...    98   5e-19
BX248515_6(BX248515|pid:none) Zebrafish DNA sequence from clone ...    97   8e-19
BC114279_1(BC114279|pid:none) Danio rerio AHA1, activator of hea...    97   8e-19
protein update 2009. 5.21
PSORT 

 psg: 0.39  gvh: 0.20  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFA259 is nuc
5' end seq. ID SFA259F
5' end seq. 
>SFA259F.Seq
ACTGTTGGCCTACTGGATTTTTATTTTTTCCAAAACCCCTTAACAAATAATAATTAAATA
AAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTTGAAAATAGAGAGGATGG
ACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTACCATGGAGTAAGAATAC
AATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGATGAATATACATTCAAAAT
CTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAATCGTAAAGGTAAAACCAT
CTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTTTTCAAACCTAAAAAGGT
TTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGATGATATTGACGAGGAGGA
TGACGACGGTAAACC----------
Length of 5' end seq. 435
3' end seq. ID SFA259Z
3' end seq. 
>SFA259Z.Seq
----------CAACAAACTGCCAACACTACTACCAACACTACCACCACCACCAATACAGT
ACCAAAGGTAACATCATCAACTGTTATTTTTAATTCAACACCAACTAAAAAACCAACTAC
TAAAACATTGAAATTAAAAGAAGAATTCCAATGTTCACCAATGGATGCATATGATGTATT
TGTAAACATTAATAAATTAAGAGCATTCACTCAAAGTGATTGTACTTTTGAAAATGAAGA
AGGCGGTAAATTTTCATTATATGGTGGTAGTATTCAAGGTGTAAATAAAACTTTATCACC
AGGCTCAAAGATTGTTCAAACTTGGAGATTGGATAATTGGAGTAAAGGTGTCGAATCTCA
AGTTACCATTACATTCAGTGTTGATGGTAAACCTTTAACAAATGTTGAAATCGTTCAAAC
TGGAATTCCAATTGACGAGTTTGAAAAAACTGAAGAAGGTTGGAAGAGAAATATTTTAGA
TCGTATAAAACATACTTTTNCTTANNCTNCTAA
Length of 3' end seq. 503
Connected seq. ID SFA259P
Connected seq. 
>SFA259P.Seq
ACTGTTGGCCTACTGGATTTTTATTTTTTCCAAAACCCCTTAACAAATAATAATTAAATA
AAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTTGAAAATAGAGAGGATGG
ACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTACCATGGAGTAAGAATAC
AATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGATGAATATACATTCAAAAT
CTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAATCGTAAAGGTAAAACCAT
CTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTTTTCAAACCTAAAAAGGT
TTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGATGATATTGACGAGGAGGA
TGACGACGGTAAACC----------CAACAAACTGCCAACACTACTACCAACACTACCAC
CACCACCAATACAGTACCAAAGGTAACATCATCAACTGTTATTTTTAATTCAACACCAAC
TAAAAAACCAACTACTAAAACATTGAAATTAAAAGAAGAATTCCAATGTTCACCAATGGA
TGCATATGATGTATTTGTAAACATTAATAAATTAAGAGCATTCACTCAAAGTGATTGTAC
TTTTGAAAATGAAGAAGGCGGTAAATTTTCATTATATGGTGGTAGTATTCAAGGTGTAAA
TAAAACTTTATCACCAGGCTCAAAGATTGTTCAAACTTGGAGATTGGATAATTGGAGTAA
AGGTGTCGAATCTCAAGTTACCATTACATTCAGTGTTGATGGTAAACCTTTAACAAATGT
TGAAATCGTTCAAACTGGAATTCCAATTGACGAGTTTGAAAAAACTGAAGAAGGTTGGAA
GAGAAATATTTTAGATCGTATAAAACATACTTTTNCTTANNCTNCTAA
Length of connected seq. 938
Full length Seq ID -
Full length Seq. -
Length of full length seq. -