SFA255
Library SF
(Link to library)
Clone ID SFA255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12230-1
Original site URL
Representative seq. ID SFA255P
(Link to Original site)
Representative DNA sequence
>SFA255 (SFA255Q) /CSM/SF/SFA2-C/SFA255Q.Seq.d/
ATATATTTGNTTTCATTATTTATTTATTTATTAATTTAAATAGTATAAACAAAATGGGAA
GGGGATTATACATTTATTAGAAATTGGATTAGTTTCCATTTTATGGGAAATATTAATAAT
TTTTCATATTGCGTTGTAAATGCAGCAAGTGGTAACTTATCAGCTTATTTTCACAACTCT
AAAAATATTGGAATTATTCTTTGGGCAAATATTGCATTTGGTTTAGTTTCAAGANTGGTT
AATACATTTTTAATTGAAAATGTTAATTCGAAATTAAAGATAGTAGTAAATTGTTTATTT
ATGTCAATTGXXXXXXXXXXGACCAACTTATTGAAGATATAGATGATGGTGGTGGTGCTN
AAGTTGCACCACCAGGTGAAACTAAAAAACAAAGATATATTCGTTGTGCACGTTTAGTTT
GGTTCAATGCTGTCAATTTAGCATTGGTTTATTTCTTTGAATATGTTGCAAGTGTAGGTG
GTGCTGATCTTGCCTTGAAAAAGGATCCAAACAATGATAATTTCTTCATTGCAAATGCAT
TTGCAATCTTTAGTTTTTGTTATCAATTGGGTGTATTAATCTCACGTTCTTCACTTCAAT
TCGTTAAAATCAAACATATTGGTGTTATCACCATCCTTCAAGGTATTAATATGGTCTTTT
GGATCATACAAGCAAAATATAAAATGGTCACCTCTGTTTGGGTACTCTTTATTCTCATGG
TTTATTGTGGTCTTTTAGGTGGTGCTTCTTATGTTAATGTATTTTACTTAATTCTTCATC
AAAAAAATATTCCAAATGAAGATAGAGAACTTTGCATTAATTATGCTGCTTTATTAGTTA
CTGTTGGTATTACACTCGCAGCTTGTTTCATTNCTCGTTATGGACCATACATTTTTAGCC
NCTGAGGTTCCAAAAACTGATGCGTCANCCTCAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
iylxslfiylli*iv*TKWEGDYTFIRNWISFHFMGNINNFSYCVVNAASGNLSAYFHNS
KNIGIILWANIAFGLVSRXVNTFLIENVNSKLKIVVNCLFMSI---

---DQLIEDIDDGGGAXVAPPGETKKQRYIRCARLVWFNAVNLALVYFFEYVASVGGADL
ALKKDPNNDNFFIANAFAIFSFCYQLGVLISRSSLQFVKIKHIGVITILQGINMVFWIIQ
AKYKMVTSVWVLFILMVYCGLLGGASYVNVFYLILHQKNIPNEDRELCINYAALLVTVGI
TLAACFIXRYGPYIFSX*gskn*cvxln


Translated Amino Acid sequence (All Frames)
Frame A:
iylxslfiylli*iv*TKWEGDYTFIRNWISFHFMGNINNFSYCVVNAASGNLSAYFHNS
KNIGIILWANIAFGLVSRXVNTFLIENVNSKLKIVVNCLFMSI---

---DQLIEDIDDGGGAXVAPPGETKKQRYIRCARLVWFNAVNLALVYFFEYVASVGGADL
ALKKDPNNDNFFIANAFAIFSFCYQLGVLISRSSLQFVKIKHIGVITILQGINMVFWIIQ
AKYKMVTSVWVLFILMVYCGLLGGASYVNVFYLILHQKNIPNEDRELCINYAALLVTVGI
TLAACFIXRYGPYIFSX*gskn*cvxln

Frame B:
yixfhylfiy*fk*ykqngkgiihlleiglvsilweiliifhial*mqqvvtyqlifttl
kilelffgqilhlv*fqxwlihf*lkmlirn*r***ivylcql---

---tnllki*mmvvvlklhhqvklknkdifvvhv*fgsmlsi*hwfislnmlqv*vvlil
p*kriqtmiisslqmhlqslvfvinwvy*shvlhfnslksnilvlspsfkvliwsfgsyk
qnikwsplfgyslfswfivvf*vvllmlmyft*ffikkifqmkienfalimlly*lllvl
hsqlvsxlvmdhtflaxevpktdasxs

Frame C:
ifxfiiylfinlnsinkmgrglyiy*kld*fpfygky**ffilrckcskw*lislfsql*
kywnyslgkyciwfsfkxg*yifn*kc*feikdssklfiyvn---

---pty*ryr*wwwcxscttr*n*ktkiyslctfslvqccqfsiglfl*icckcrwc*sc
lekgskq**flhckcicnl*fllsigcinltfftsir*nqtywcyhhpsry*yglldhts
ki*nghlclgtlyshgllwsfrwcflc*cillnssskkysk*r*rtlh*lccfisycwyy
trslfhxslwtihf*plrfqklmrxpq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFA255 (SFA255Q) /CSM/SF/SFA2-C/SFA255Q.Seq.d/ 1717 0.0
SLB574 (SLB574Q) /CSM/SL/SLB5-D/SLB574Q.Seq.d/ 1128 0.0
CHC249 (CHC249Q) /CSM/CH/CHC2-C/CHC249Q.Seq.d/ 1122 0.0
AFM629 (AFM629Q) /CSM/AF/AFM6-B/AFM629Q.Seq.d/ 1122 0.0
CFD301 (CFD301Q) /CSM/CF/CFD3-A/CFD301Q.Seq.d/ 1118 0.0
SFI873 (SFI873Q) /CSM/SF/SFI8-D/SFI873Q.Seq.d/ 1114 0.0
SFF259 (SFF259Q) /CSM/SF/SFF2-C/SFF259Q.Seq.d/ 1114 0.0
SFC282 (SFC282Q) /CSM/SF/SFC2-D/SFC282Q.Seq.d/ 1114 0.0
AFF192 (AFF192Q) /CSM/AF/AFF1-D/AFF192Q.Seq.d/ 1114 0.0
VFC385 (VFC385Q) /CSM/VF/VFC3-D/VFC385Q.Seq.d/ 1110 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 44 4e-10 13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 46 4e-08 5
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 48 5e-08 12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 44 9e-08 14
AX344569|AX344569.1 Sequence 20 from Patent WO0200932. 36 2e-07 16
AC101935|AC101935.4 Mus musculus clone RP24-76H22, WORKING DRAFT SEQUENCE, 7 unordered pieces. 36 2e-07 12
CG730960|CG730960.1 1119131D11.2EL_x1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence. 46 2e-07 2
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 38 2e-07 14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 3e-07 16
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 46 4e-07 13
dna update 2003.12.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM502224_134(AM502224|pid:none) Leishmania infantum chromosome 6. 98 4e-19
(Q6BZW3) RecName: Full=Protein BTN1; Flags: Precursor; &CR38213... 92 2e-17
AC105378_11(AC105378|pid:none) Trypanosoma brucei chromosome 7 c... 87 8e-16
(Q2GN49) RecName: Full=Protein BTN1; 85 4e-15
(Q758C3) RecName: Full=Protein BTN1; Flags: Precursor; &AE01681... 82 3e-14
(Q4HX89) RecName: Full=Protein BTN1; 81 4e-14
(Q29611) RecName: Full=Battenin; AltName: Full=Protein CLN3; &A... 81 6e-14
FM992688_482(FM992688|pid:none) Candida dubliniensis CD36 chromo... 80 7e-14
(Q59LX9) RecName: Full=Protein BTN1; Flags: Precursor; 80 1e-13
AF058447_1(AF058447|pid:none) Saccharomyces cerevisiae strain K2... 77 6e-13
protein update 2009. 5.21
PSORT

psg: 0.90 gvh: 0.47 alm: 0.24 top: 0.83 tms: 0.27 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: plasma membrane
24.0 %: endoplasmic reticulum
16.0 %: vacuolar
12.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SFA255 is pla

5' end seq. ID SFA255F
5' end seq.
>SFA255F.Seq
ATATATTTGNTTTCATTATTTATTTATTTATTAATTTAAATAGTATAAACAAAATGGGAA
GGGGATTATACATTTATTAGAAATTGGATTAGTTTCCATTTTATGGGAAATATTAATAAT
TTTTCATATTGCGTTGTAAATGCAGCAAGTGGTAACTTATCAGCTTATTTTCACAACTCT
AAAAATATTGGAATTATTCTTTGGGCAAATATTGCATTTGGTTTAGTTTCAAGANTGGTT
AATACATTTTTAATTGAAAATGTTAATTCGAAATTAAAGATAGTAGTAAATTGTTTATTT
ATGTCAATTG----------
Length of 5' end seq. 310
3' end seq. ID SFA255Z
3' end seq.
>SFA255Z.Seq
----------GACCAACTTATTGAAGATATAGATGATGGTGGTGGTGCTNAAGTTGCACC
ACCAGGTGAAACTAAAAAACAAAGATATATTCGTTGTGCACGTTTAGTTTGGTTCAATGC
TGTCAATTTAGCATTGGTTTATTTCTTTGAATATGTTGCAAGTGTAGGTGGTGCTGATCT
TGCCTTGAAAAAGGATCCAAACAATGATAATTTCTTCATTGCAAATGCATTTGCAATCTT
TAGTTTTTGTTATCAATTGGGTGTATTAATCTCACGTTCTTCACTTCAATTCGTTAAAAT
CAAACATATTGGTGTTATCACCATCCTTCAAGGTATTAATATGGTCTTTTGGATCATACA
AGCAAAATATAAAATGGTCACCTCTGTTTGGGTACTCTTTATTCTCATGGTTTATTGTGG
TCTTTTAGGTGGTGCTTCTTATGTTAATGTATTTTACTTAATTCTTCATCAAAAAAATAT
TCCAAATGAAGATAGAGAACTTTGCATTAATTATGCTGCTTTATTAGTTACTGTTGGTAT
TACACTCGCAGCTTGTTTCATTNCTCGTTATGGACCATACATTTTTAGCCNCTGAGGTTC
CAAAAACTGATGCGTCANCCTCAAC
Length of 3' end seq. 615
Connected seq. ID SFA255P
Connected seq.
>SFA255P.Seq
ATATATTTGNTTTCATTATTTATTTATTTATTAATTTAAATAGTATAAACAAAATGGGAA
GGGGATTATACATTTATTAGAAATTGGATTAGTTTCCATTTTATGGGAAATATTAATAAT
TTTTCATATTGCGTTGTAAATGCAGCAAGTGGTAACTTATCAGCTTATTTTCACAACTCT
AAAAATATTGGAATTATTCTTTGGGCAAATATTGCATTTGGTTTAGTTTCAAGANTGGTT
AATACATTTTTAATTGAAAATGTTAATTCGAAATTAAAGATAGTAGTAAATTGTTTATTT
ATGTCAATTG----------GACCAACTTATTGAAGATATAGATGATGGTGGTGGTGCTN
AAGTTGCACCACCAGGTGAAACTAAAAAACAAAGATATATTCGTTGTGCACGTTTAGTTT
GGTTCAATGCTGTCAATTTAGCATTGGTTTATTTCTTTGAATATGTTGCAAGTGTAGGTG
GTGCTGATCTTGCCTTGAAAAAGGATCCAAACAATGATAATTTCTTCATTGCAAATGCAT
TTGCAATCTTTAGTTTTTGTTATCAATTGGGTGTATTAATCTCACGTTCTTCACTTCAAT
TCGTTAAAATCAAACATATTGGTGTTATCACCATCCTTCAAGGTATTAATATGGTCTTTT
GGATCATACAAGCAAAATATAAAATGGTCACCTCTGTTTGGGTACTCTTTATTCTCATGG
TTTATTGTGGTCTTTTAGGTGGTGCTTCTTATGTTAATGTATTTTACTTAATTCTTCATC
AAAAAAATATTCCAAATGAAGATAGAGAACTTTGCATTAATTATGCTGCTTTATTAGTTA
CTGTTGGTATTACACTCGCAGCTTGTTTCATTNCTCGTTATGGACCATACATTTTTAGCC
NCTGAGGTTCCAAAAACTGATGCGTCANCCTCAAC
Length of connected seq. 925
Full length Seq ID -
Full length Seq. -
Length of full length seq. -