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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFA224
Library SF
(Link to library)
Clone ID SFA224
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13855-1
Original site URL
Representative seq. ID SFA224P
(Link to Original site)
Representative DNA sequence 
>SFA224 (SFA224Q) /CSM/SF/SFA2-A/SFA224Q.Seq.d/
ATNGGGGTTGCTATNGGGGATTTCGTTGGGGATTNATCAGTTTTAGCAGATTNAAAACTT
TTTGANGGTAAATTAAAAGATNCTAANGTTTTTCATCANGAAAATTTAAATTCATTTATG
TCATTAGGTAAXXXXXXXXXXTTCAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGT
ACTTTTGAATGATTGGAGTGCAAGAGATATCCAAAAATGGNAATACGTTCCATTGGGTCC
ATTCTTGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATT
GCAACCATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGA
ACAAGGTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTC
AAAACCTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACA
ATTGGCTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGG
TACAATTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGG
TAGTAAAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGG
TGATTCTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAA
TTGTGAAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAAAAATTAATTAAATAAA
TAAATAAAAAAAAAAACTNTTTTAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
XGVAXGDFVGDXSVLADXKLFXGKLKDXXVFHXENLNSFMSLG---

---SIESAKDHIFGLVLLNDWSARDIQKWXYVPLGPFLAKNFGSTISPWVVTMEALQPFA
TKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYWTLTQQLAHH
TVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDSVI
LSGLCKGNGYQIGFGNCEGTILPADKRQ*kkin*ink*kkklf*
Translated Amino Acid sequence (All Frames) 
Frame A:
XGVAXGDFVGDXSVLADXKLFXGKLKDXXVFHXENLNSFMSLG---

---fn*vckrsylwfgtfe*leckrypkmxirsigsilgkefrlnyitmgcynggiatic
ykttnsrsttneissrtr*yyl*y*iis*y*isknvkts*gfnfkfeihvldthstigss
yckwl*yecw*ftwywyn*wsn*r*lwfnvgtller**sgliry*nk*rkkihsrw*fcy
liwsl*r*wlsnwfw*l*rynfts**tsikkn*lnk*ikkktxln

Frame B:
xgllxgislgixqf*qixnflxvn*kxlxffixki*ihlch*v---

---SIESAKDHIFGLVLLNDWSARDIQKWXYVPLGPFLAKNFGSTISPWVVTMEALQPFA
TKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYWTLTQQLAHH
TVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDSVI
LSGLCKGNGYQIGFGNCEGTILPADKRQ*kkin*ink*kkklf*

Frame C:
xgcyxgfrwgxisfsrxktf*x*ikrx*xfssxkfkfiyvir*---

---qlslqkiislvwyf*migvqeiskngntfhwvhswqrisaqlyhhgllqwrhcnhll
qnhqlkihnq*nifknkvilplilnyqlvlnlqkcqnlirfqlqi*ntcighslnnwlii
l*mvvi*mlviylvlvqlvvqlkiamvqcwnslgkvvkwsh*vlkqmkkensfkmvills
ylvfvkvmviklvlvivkvqfyqlinvnkkklik*inkkknxfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA224 (SFA224Q) /CSM/SF/SFA2-A/SFA224Q.Seq.d/                       1390   0.0
VFL795 (VFL795Q) /CSM/VF/VFL7-D/VFL795Q.Seq.d/                       1217   0.0
SFF638 (SFF638Q) /CSM/SF/SFF6-B/SFF638Q.Seq.d/                       1217   0.0
SFD819 (SFD819Q) /CSM/SF/SFD8-A/SFD819Q.Seq.d/                       1217   0.0
SFD588 (SFD588Q) /CSM/SF/SFD5-D/SFD588Q.Seq.d/                       1217   0.0
CHD537 (CHD537Q) /CSM/CH/CHD5-B/CHD537Q.Seq.d/                       1217   0.0
CHD530 (CHD530Q) /CSM/CH/CHD5-B/CHD530Q.Seq.d/                       1217   0.0
CHC122 (CHC122Q) /CSM/CH/CHC1-A/CHC122Q.Seq.d/                       1217   0.0
CFJ568 (CFJ568Q) /CSM/CF/CFJ5-C/CFJ568Q.Seq.d/                       1217   0.0
CFF515 (CFF515Q) /CSM/CF/CFF5-A/CFF515Q.Seq.d/                       1217   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI504681|BI504681.1 BB170011A20F01.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170011A20F01 5', mRNA sequence.    58   3e-06  2
CF440839|CF440839.1 EST677184 normalized cDNA library of onion Allium cepa cDNA clone ACAFM72, mRNA sequence.    58   2e-04  1
BJ569610|BJ569610.1 Ipomoea nil cDNA clone:jm6b21, 3' end, single read.    58   2e-04  1
CF446374|CF446374.1 EST682719 normalized cDNA library of onion Allium cepa cDNA clone ACAHY76, mRNA sequence.    58   2e-04  1
BM774584|BM774584.1 ra95c11.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence.    58   2e-04  1
BW129032|BW129032.1 Ciona intestinalis cDNA, clone:rcign001a22, 3' end, single read.    44   2e-04  3
BE364071|BE364071.1 PI1_11_D06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence.    48   4e-04  2
CA269040|CA269040.1 SCRURT3065C11.g RT3 Saccharum officinarum cDNA clone SCRURT3065C11 5', mRNA sequence.    48   6e-04  2
CA291771|CA291771.1 SCQGFL8016D01.g FL8 Saccharum officinarum cDNA clone SCQGFL8016D01 5', mRNA sequence.    48   6e-04  2
BW075982|BW075982.1 Ciona intestinalis cDNA, clone:rcieg067n18, 3' end, single read.    42   7e-04  3
dna update 2003.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXQ1) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   423   e-117
BT078080_1(BT078080|pid:none) Lepeophtheirus salmonis clone lsal...   275   1e-72
AY891819_1(AY891819|pid:none) Synthetic construct Homo sapiens c...   268   1e-70
(P16930) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   268   1e-70
(A5PKH3) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   267   3e-70
BC157696_1(BC157696|pid:none) Xenopus tropicalis hypothetical pr...   267   3e-70
AM398681_665(AM398681|pid:none) Flavobacterium psychrophilum JIP...   263   5e-69
BT074744_1(BT074744|pid:none) Osmerus mordax clone omor-rgc-510-...   263   6e-69
T25813(T25813) hypothetical protein K10C2.4 - Caenorhabditis ele...   263   6e-69
CP000159_2302(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   261   1e-68
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFA224 is cyt
5' end seq. ID SFA224F
5' end seq. 
>SFA224F.Seq
ATNGGGGTTGCTATNGGGGATTTCGTTGGGGATTNATCAGTTTTAGCAGATTNAAAACTT
TTTGANGGTAAATTAAAAGATNCTAANGTTTTTCATCANGAAAATTTAAATTCATTTATG
TCATTAGGTAA----------
Length of 5' end seq. 131
3' end seq. ID SFA224Z
3' end seq. 
>SFA224Z.Seq
----------TTCAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTTTGAATG
ATTGGAGTGCAAGAGATATCCAAAAATGGNAATACGTTCCATTGGGTCCATTCTTGGCAA
AGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACCATTTG
CTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAGGTAATA
CTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAACCTCATA
AGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGGCTCATC
ATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAATTAGTG
GTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTAAAGTGG
TCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATTCTGTTA
TCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTGAAGGTA
CAATTTTACCAGCTGATAAACGTCAATAAAAAAAAATTAATTAAATAAATAAATAAAAAA
AAAAACTNTTTTAAAT
Length of 3' end seq. 666
Connected seq. ID SFA224P
Connected seq. 
>SFA224P.Seq
ATNGGGGTTGCTATNGGGGATTTCGTTGGGGATTNATCAGTTTTAGCAGATTNAAAACTT
TTTGANGGTAAATTAAAAGATNCTAANGTTTTTCATCANGAAAATTTAAATTCATTTATG
TCATTAGGTAA----------TTCAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGT
ACTTTTGAATGATTGGAGTGCAAGAGATATCCAAAAATGGNAATACGTTCCATTGGGTCC
ATTCTTGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATT
GCAACCATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGA
ACAAGGTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTC
AAAACCTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACA
ATTGGCTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGG
TACAATTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGG
TAGTAAAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGG
TGATTCTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAA
TTGTGAAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAAAAATTAATTAAATAAA
TAAATAAAAAAAAAAACTNTTTTAAAT
Length of connected seq. 797
Full length Seq ID -
Full length Seq. -
Length of full length seq. -