SFA165
Library SF
(Link to library)
Clone ID SFA165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SFA165Z
(Link to Original site)
Representative DNA sequence
>SFA165 (SFA165Q) /CSM/SF/SFA1-C/SFA165Q.Seq.d/
XXXXXXXXXXATTGTCACNCTGCTCACATTGCCTGTAAATTCNCTGAAATCGTCGATAAA
GTTGATCGTCGTACTGGNGCCGTCGTTGCCAAANAAGGTACTGCCNCCGTCGTCTTAAAN
AATGGTGATGCTGCTATGGTCGAATTAACCCCATTCTCGTCCAATGTGTGTTGAATCATT
CNCTGAATACCCNCCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTTGCCGT
CGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCAGGTGATAAGAAAGGTGC
TGCTGCTCCACCAAAGAAGAAATAAATAATTTGAAAAAAAATTTTATAATTATTCTAAAA
ATAAAAAAAAAAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---vtlltlpvnslkssiklivvlxpslpxkvlppss*xmvmllwsn*PHSRPMCVESFX
EYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPPKKK*ii*kkil*lf*k*
kkki


Translated Amino Acid sequence (All Frames)
Frame A:
---lsxcshcl*ix*nrr*s*ssywxrrcqxrycxrrlkxw*ccygrinpilvqcvlnhs
lntxh*vvspsei*dkplpsvssnqpsrkpqvkqvirkvlllhqrrnk*fekkfynyskn
kkkk


Frame B:
---chxahiackfxeivdkvdrrtgavvakxgtaxvvlxngdaamveltpfssnvc*iix
*ipxirsfrrqryetnrcrrchqinrqespr*sr**ercccstkeeinnlkknfiiilki
kkkn


Frame C:
---vtlltlpvnslkssiklivvlxpslpxkvlppss*xmvmllwsn*PHSRPMCVESFX
EYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPPKKK*ii*kkil*lf*k*
kkki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFA165 (SFA165Q) /CSM/SF/SFA1-C/SFA165Q.Seq.d/ 593 e-169
VSA495 (VSA495Q) /CSM/VS/VSA4-D/VSA495Q.Seq.d/ 569 e-161
SLC814 (SLC814Q) /CSM/SL/SLC8-A/SLC814Q.Seq.d/ 569 e-161
SLA634 (SLA634Q) /CSM/SL/SLA6-B/SLA634Q.Seq.d/ 569 e-161
SLA633 (SLA633Q) /CSM/SL/SLA6-B/SLA633Q.Seq.d/ 569 e-161
SFG782 (SFG782Q) /CSM/SF/SFG7-D/SFG782Q.Seq.d/ 569 e-161
FC-BQ16 (FC-BQ16Q) /CSM/FC/FC-BQ/FC-BQ16Q.Seq.d/ 569 e-161
FC-BP24 (FC-BP24Q) /CSM/FC/FC-BP/FC-BP24Q.Seq.d/ 569 e-161
FC-BO15 (FC-BO15Q) /CSM/FC/FC-BO/FC-BO15Q.Seq.d/ 569 e-161
FC-BG17 (FC-BG17Q) /CSM/FC/FC-BG/FC-BG17Q.Seq.d/ 569 e-161

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 329 e-158 3
X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 266 e-134 2
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 250 3e-86 2
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds. 113 4e-24 2
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds. 113 4e-24 2
AZ932350|AZ932350.1 474.dhz97h09.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz97h09.s1, DNA sequence. 107 1e-19 1
L12471|L12471.2 Paramecium tetraurelia parafusin mRNA, partial cds. 84 3e-18 2
AF172083|AF172083.2 Paramecium tetraurelia translation elongation factor 1-alpha (EF-1a) gene, partial cds. 84 3e-18 2
AL409155|AL409155.1 T7 end of clone AV0AA013A10 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 84 4e-18 2
AL408145|AL408145.1 T7 end of clone AV0AA006G11 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 84 6e-18 2
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 73 4e-24
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 73 4e-24
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 73 4e-24
AJ970312_1(AJ970312|pid:none) Hebeloma cylindrosporum mRNA for e... 67 1e-17
AY264216_1(AY264216|pid:none) Pterodoras granulosus elongation f... 65 1e-17
(P40911) RecName: Full=Elongation factor 1-alpha; Short... 67 2e-17
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 66 2e-17
AY849694_1(AY849694|pid:none) Magnaporthe grisea elongation fact... 67 2e-17
FJ695618_1(FJ695618|pid:none) Piriformospora indica translation ... 66 2e-17
FN323413_1(FN323413|pid:none) Schistosoma japonicum isolate Anhu... 62 3e-17
protein update 2009. 5.21
PSORT

psg: 0.73 gvh: 0.25 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02
nuc: 0.15 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for SFA165 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFA165Z
3' end seq.
>SFA165Z.Seq
----------ATTGTCACNCTGCTCACATTGCCTGTAAATTCNCTGAAATCGTCGATAAA
GTTGATCGTCGTACTGGNGCCGTCGTTGCCAAANAAGGTACTGCCNCCGTCGTCTTAAAN
AATGGTGATGCTGCTATGGTCGAATTAACCCCATTCTCGTCCAATGTGTGTTGAATCATT
CNCTGAATACCCNCCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTTGCCGT
CGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCAGGTGATAAGAAAGGTGC
TGCTGCTCCACCAAAGAAGAAATAAATAATTTGAAAAAAAATTTTATAATTATTCTAAAA
ATAAAAAAAAAAAATA
Length of 3' end seq. 366
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -