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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFA144
Library SF
(Link to library)
Clone ID SFA144
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16046-1
Original site URL
Representative seq. ID SFA144P
(Link to Original site)
Representative DNA sequence 
>SFA144 (SFA144Q) /CSM/SF/SFA1-B/SFA144Q.Seq.d/
ACTGTTGGCCTACTGGGNATGAGNAATTATTTTATTGCTTTTTTTAATTGTTTTCGTTGT
TGCTCAAAGTTCATCATCATCATCCTCTTCAGGGATGTCCATGTGATTCATCATATTTAT
GTGAACCACTTCAAATTGCACCAAGACAAGAGTTTTTAGGTTTTTCATTAAATAGCACGC
AATATCCAAATTATTATTGGAATCAATTAACAACACTTGCGATATTTTATGAAACAATTG
AAGATGAATTATTATGTATTGCACATGAAAATGATGTTAGATTAGTATGGGGTACAACAT
TTCCAATTGAAAATCTTGGTAATTCAAGTTATATTGAAGAATGGATTCAAGAACAAATTG
AAAAAGTTCAAAGTACATTTACAGATGGTTTAAATTTTGATGTTGAAAGTCCAATTACAG
ATCCAACCATCGCTCAACAATATACAGAATTAGTATCAGCAACTAATAAAGCATTTAAAG
CAATTAATCCATTCTATCAAATTTCAATCGATGTAGCATGGNCACCATCATGCATTGATA
AACGTTGTTATGATTATGCTGGTTTAGCXXXXXXXXXXAGNTTGGNTTGANAAACCCCNA
TCNTTNTCNATTAAAGNTCNATTAGCCCAAAAATTNAATTTAAAAGGNGNTGCNGNTTGG
AAAATTGATTTTTTAAATTTTTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptgxexlfycff*LFSLLLKVHHHHPLQGCPCDSSYLCEPLQIAPRQEFLGFSLNSTQ
YPNYYWNQLTTLAIFYETIEDELLCIAHENDVRLVWGTTFPIENLGNSSYIEEWIQEQIE
KVQSTFTDGLNFDVESPITDPTIAQQYTELVSATNKAFKAINPFYQISIDVAWXPSCIDK
RCYDYAGL---

---XWXXKPXSXSIKXXLAQKXNLKGXAXWKIDFLNFS
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllgmxnyfiaffncfrccskfiiiilfrdvhvihhiyvnhfklhqdksf*vfh*iar
niqiiigin*qhlryfmkqlkmnyyvlhmkmmld*ygvqhfqlkilviqvilkngfknkl
kkfkvhlqmv*ilmlkvqlqiqpslnniqn*yqqlikhlkqlihsikfqsm*hghhhali
nvvmimlv*---

---xlx*xtpixxx*xsispkixfkrxcxlen*ffkff

Frame B:
llaywx*xiilllflivfvvaqssssssssgmsm*fiifm*ttsnctktrvfrffik*ha
isklllesinntcdil*nn*r*iimyct*k*c*ismgynisn*ksw*fkly*rmdsrtn*
ksskyiyrwfkf*c*ksnyrsnhrstiyrisisn**si*sn*silsnfnrcsmxtimh**
tll*lcwfs---

---XWXXKPXSXSIKXXLAQKXNLKGXAXWKIDFLNFS

Frame C:
cwptgxexlfycff*LFSLLLKVHHHHPLQGCPCDSSYLCEPLQIAPRQEFLGFSLNSTQ
YPNYYWNQLTTLAIFYETIEDELLCIAHENDVRLVWGTTFPIENLGNSSYIEEWIQEQIE
KVQSTFTDGLNFDVESPITDPTIAQQYTELVSATNKAFKAINPFYQISIDVAWXPSCIDK
RCYDYAGL---

---xglxnpxxxxlkxx*pknxi*kxxxxgklif*if
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA144 (SFA144Q) /CSM/SF/SFA1-B/SFA144Q.Seq.d/                       1154   0.0
VFO107 (VFO107Q) /CSM/VF/VFO1-A/VFO107Q.Seq.d/                       1015   0.0
VFN686 (VFN686Q) /CSM/VF/VFN6-D/VFN686Q.Seq.d/                       1015   0.0
VFN432 (VFN432Q) /CSM/VF/VFN4-B/VFN432Q.Seq.d/                       1015   0.0
VFD280 (VFD280Q) /CSM/VF/VFD2-D/VFD280Q.Seq.d/                       1015   0.0
VFD246 (VFD246Q) /CSM/VF/VFD2-B/VFD246Q.Seq.d/                       1015   0.0
VFB745 (VFB745Q) /CSM/VF/VFB7-B/VFB745Q.Seq.d/                       1015   0.0
CFC160 (CFC160Q) /CSM/CF/CFC1-C/CFC160Q.Seq.d/                       1015   0.0
AFE566 (AFE566Q) /CSM/AF/AFE5-C/AFE566Q.Seq.d/                       1015   0.0
SLE328 (SLE328Q) /CSM/SL/SLE3-B/SLE328Q.Seq.d/                       1009   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   680   0.0    9
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    88   6e-18  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   3e-06  16
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   2e-04  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   2e-04  14
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    42   2e-04  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    44   5e-04  12
AL008970|AL008970.3 Plasmodium falciparum MAL3P4.                  36   6e-04  10
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    34   0.002  10
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   0.004  8
dna update 2003.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY260731_1(AY260731|pid:none) Xenopus laevis putative di-N-acety...   115   1e-24
BC088895_1(BC088895|pid:none) Xenopus tropicalis hypothetical LO...   114   3e-24
BC164759_1(BC164759|pid:none) Danio rerio chitobiase, di-N-acety...   111   2e-23
BC095064_1(BC095064|pid:none) Danio rerio chitobiase, di-N-acety...   111   2e-23
BC072723_1(BC072723|pid:none) Danio rerio chitobiase, di-N-acety...   111   2e-23
AK008791_1(AK008791|pid:none) Mus musculus adult male stomach cD...   107   2e-22
(Q8R242) RecName: Full=Di-N-acetylchitobiase;          EC=3.2.1....   107   2e-22
AC115592_28(AC115592|pid:none) Dictyostelium discoideum chromoso...   100   4e-20
AK314640_1(AK314640|pid:none) Homo sapiens cDNA, FLJ95483, highl...   100   4e-20
AB168353_1(AB168353|pid:none) Macaca fascicularis testis cDNA cl...    99   1e-19
protein update 2009. 5.21
PSORT 

 psg: 0.76  gvh: 0.59  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for SFA144 is cyt
5' end seq. ID SFA144F
5' end seq. 
>SFA144F.Seq
ACTGTTGGCCTACTGGGNATGAGNAATTATTTTATTGCTTTTTTTAATTGTTTTCGTTGT
TGCTCAAAGTTCATCATCATCATCCTCTTCAGGGATGTCCATGTGATTCATCATATTTAT
GTGAACCACTTCAAATTGCACCAAGACAAGAGTTTTTAGGTTTTTCATTAAATAGCACGC
AATATCCAAATTATTATTGGAATCAATTAACAACACTTGCGATATTTTATGAAACAATTG
AAGATGAATTATTATGTATTGCACATGAAAATGATGTTAGATTAGTATGGGGTACAACAT
TTCCAATTGAAAATCTTGGTAATTCAAGTTATATTGAAGAATGGATTCAAGAACAAATTG
AAAAAGTTCAAAGTACATTTACAGATGGTTTAAATTTTGATGTTGAAAGTCCAATTACAG
ATCCAACCATCGCTCAACAATATACAGAATTAGTATCAGCAACTAATAAAGCATTTAAAG
CAATTAATCCATTCTATCAAATTTCAATCGATGTAGCATGGNCACCATCATGCATTGATA
AACGTTGTTATGATTATGCTGGTTTAGC----------
Length of 5' end seq. 568
3' end seq. ID SFA144Z
3' end seq. 
>SFA144Z.Seq
----------AGNTTGGNTTGANAAACCCCNATCNTTNTCNATTAAAGNTCNATTAGCCC
AAAAATTNAATTTAAAAGGNGNTGCNGNTTGGAAAATTGATTTTTTAAATTTTTCA
Length of 3' end seq. 106
Connected seq. ID SFA144P
Connected seq. 
>SFA144P.Seq
ACTGTTGGCCTACTGGGNATGAGNAATTATTTTATTGCTTTTTTTAATTGTTTTCGTTGT
TGCTCAAAGTTCATCATCATCATCCTCTTCAGGGATGTCCATGTGATTCATCATATTTAT
GTGAACCACTTCAAATTGCACCAAGACAAGAGTTTTTAGGTTTTTCATTAAATAGCACGC
AATATCCAAATTATTATTGGAATCAATTAACAACACTTGCGATATTTTATGAAACAATTG
AAGATGAATTATTATGTATTGCACATGAAAATGATGTTAGATTAGTATGGGGTACAACAT
TTCCAATTGAAAATCTTGGTAATTCAAGTTATATTGAAGAATGGATTCAAGAACAAATTG
AAAAAGTTCAAAGTACATTTACAGATGGTTTAAATTTTGATGTTGAAAGTCCAATTACAG
ATCCAACCATCGCTCAACAATATACAGAATTAGTATCAGCAACTAATAAAGCATTTAAAG
CAATTAATCCATTCTATCAAATTTCAATCGATGTAGCATGGNCACCATCATGCATTGATA
AACGTTGTTATGATTATGCTGGTTTAGC----------AGNTTGGNTTGANAAACCCCNA
TCNTTNTCNATTAAAGNTCNATTAGCCCAAAAATTNAATTTAAAAGGNGNTGCNGNTTGG
AAAATTGATTTTTTAAATTTTTCA
Length of connected seq. 674
Full length Seq ID -
Full length Seq. -
Length of full length seq. -