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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFA139
Library SF
(Link to library)
Clone ID SFA139
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SFA139Z
(Link to Original site)
Representative DNA sequence 
>SFA139 (SFA139Q) /CSM/SF/SFA1-B/SFA139Q.Seq.d/
XXXXXXXXXXCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATC
GTTAGTACTGGACCACTCGCAATTGCTGCTNATGCTGTTGAGTGGCAATTTTATATTGGT
GGTGTATTTGATATCACCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGG
TTACTCTGCTAAAAATACAATTTTNCCGTAAAAATATGCCATATTGGATTGTAAAGAATT
NCTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---ilq*sqrmkl*WLGTSLVLDHSQLLLMLLSGNFILVVYLISPCNPNSLDHGILIVGY
SAKNTIXP*kyaildckexlgcrlgrtrihlfkkr
Translated Amino Acid sequence (All Frames) 
Frame A:
---qfyndpke*ncngwvhr*ywttrnccxcc*vailywwci*yhhviqihlimvf*llv
tllkiqfxrknmpywivknxwgadwgeqgyiylrrg


Frame B:
---nftmipknetvmagyivstgplaiaaxavewqfyiggvfditm*skft*swyfncwl
lc*kynfxvkichigl*rixgvqigenkdtfi*ee


Frame C:
---ilq*sqrmkl*WLGTSLVLDHSQLLLMLLSGNFILVVYLISPCNPNSLDHGILIVGY
SAKNTIXP*kyaildckexlgcrlgrtrihlfkkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFA139 (SFA139Q) /CSM/SF/SFA1-B/SFA139Q.Seq.d/                        537   e-152
VFC443 (VFC443Q) /CSM/VF/VFC4-B/VFC443Q.Seq.d/                        505   e-142
VFH196 (VFH196Q) /CSM/VF/VFH1-D/VFH196Q.Seq.d/                        498   e-140
VFF582 (VFF582Q) /CSM/VF/VFF5-D/VFF582Q.Seq.d/                        496   e-139
VFA268 (VFA268Q) /CSM/VF/VFA2-C/VFA268Q.Seq.d/                        496   e-139
SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                        496   e-139
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/                        496   e-139
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/                        496   e-139
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                        496   e-139
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/                        496   e-139
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.      240   e-135  3
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.    74   1e-09  1
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.    74   1e-09  1
X85121|X85121.1 Artificial sequences cloning vector DNA pDXD-3C.    74   1e-09  1
AJ510163|AJ510163.1 Cloning vector pDXA-MCS-YFP.                   74   1e-09  1
AJ510162|AJ510162.1 Cloning vector pDXA-YFP-NotI.                  74   1e-09  1
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.    74   1e-09  1
AJ510161|AJ510161.1 Cloning vector pDXA-YFP-MCS.                   74   1e-09  1
AJ510160|AJ510160.1 Cloning vector pDXA-CFP-MCS.                   74   1e-09  1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                    74   1e-09  1
dna update 2003.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...    84   2e-38
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)...    49   7e-15
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...    45   1e-13
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...    45   1e-13
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183...    49   4e-13
BC153363_1(BC153363|pid:none) Xenopus tropicalis hypothetical pr...    50   2e-12
AY390282_1(AY390282|pid:none) Periserrula leucophryna cysteine p...    45   3e-12
AF309626_1(AF309626|pid:none) Leishmania donovani clone Ld-A cys...    45   4e-12
AY896786_1(AY896786|pid:none) Leishmania donovani strain MHOM/KE...    45   4e-12
AY896788_1(AY896788|pid:none) Leishmania donovani strain IMAR/KE...    45   5e-12
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.65  alm: 0.21  top: 0.53  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFA139 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFA139Z
3' end seq. 
>SFA139Z.Seq
----------CCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATC
GTTAGTACTGGACCACTCGCAATTGCTGCTNATGCTGTTGAGTGGCAATTTTATATTGGT
GGTGTATTTGATATCACCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGG
TTACTCTGCTAAAAATACAATTTTNCCGTAAAAATATGCCATATTGGATTGTAAAGAATT
NCTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGA
Length of 3' end seq. 280
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -