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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AD09
Library FCL
(Link to library)
Clone ID FCL-AD09
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15743-1
Original site URL
Representative seq. ID FCL-AD09Z
(Link to Original site)
Representative DNA sequence 
>FCL-AD09 (FCL-AD09Q) /CSM/FCL/FCL-AD/FCL-AD09Q.Seq.d/
XXXXXXXXXXCGATTCCATGAAAGTTATCGAATTGAAACCAAATGGTGCAAACATTCCTG
TCACTGAAGATAATAAATTAGAATATGTTCGTTTGGTTGCTTCCGTTAGAATGACAAACT
CAATCAAGGATCAAATCAATAGCTTCTTAGAAGGTTTCCACGAACTCATTCCAAAATCAT
TGATTGGTATTTTCAATGAAATGGAGTTGGAATTATTGATCAGTGGTCTTCCAGAGATTG
ATATCGATGATCTTCGTGCAAACACTGAATATAGTGGTTACTCTTCCGATTCTCAACAAA
TCCTTTGGTTCTGGAATACTGTTTCAAACTTTTCAAATGAAGAAAAAGCTTCACTCTTAC
AATTTGTCACTGGTACAAGTAAAGTACCTTTGGAAGGTTTCAAAGCTTTAGGTGGTATGG
GAGGCCCTCAAAAATTCCAAATTCATAGAATCAGAGGTAATGCTCACAGATTACCAACCG
CTCACACATGTTTCAATCAATTGGATATACCAGAATTTGAATCTCAAGAACAATTGACCA
AATTATTAAAAATTGCAATTGGTGAAGCTTCAGAAGGTTTTGGTTTTGTATAGATATATA
TTAAAAAAATAAACTAAAATAAAAAATAAAAAAAAAAAAATAAAATAAAAGATAAAAAAA
AATAATTTTAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4.20
Translated Amino Acid sequence 
---DSMKVIELKPNGANIPVTEDNKLEYVRLVASVRMTNSIKDQINSFLEGFHELIPKSL
IGIFNEMELELLISGLPEIDIDDLRANTEYSGYSSDSQQILWFWNTVSNFSNEEKASLLQ
FVTGTSKVPLEGFKALGGMGGPQKFQIHRIRGNAHRLPTAHTCFNQLDIPEFESQEQLTK
LLKIAIGEASEGFGFV*iyikkin*nkk*kkknkikdkkk*f*kykkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---DSMKVIELKPNGANIPVTEDNKLEYVRLVASVRMTNSIKDQINSFLEGFHELIPKSL
IGIFNEMELELLISGLPEIDIDDLRANTEYSGYSSDSQQILWFWNTVSNFSNEEKASLLQ
FVTGTSKVPLEGFKALGGMGGPQKFQIHRIRGNAHRLPTAHTCFNQLDIPEFESQEQLTK
LLKIAIGEASEGFGFV*iyikkin*nkk*kkknkikdkkk*f*kykkkkkkkkkk


Frame B:
---ip*klsn*nqmvqtflslkiin*nmfvwllple*qtqsriksias*kvstnsfqnh*
lvfsmkwswny*svvfqrlismifvqtlnivvtlpilnksfgsgilfqtfqmkkklhsyn
lslvqvkylwkvskl*vvwealknskfiesevmltdyqplthvsinwiyqnlnlknn*pn
y*klqlvklqkvlvlyryilkk*tkiknkkkkik*kikknnfkntkkkkkkkkkk


Frame C:
---fhesyrietkwckhsch*r**iricsfgcfr*ndklnqgsnq*llrrfprthskiid
wyfq*ngvgiidqwssrd*yr*ssckh*i*wllfrfstnplvleycfklfk*rksftlti
chwyk*stfgrfqsfrwygrpskipns*nqr*csqitnrshmfqsigytri*isrtidqi
ikncnw*sfrrfwfcidiy*knklk*kikkkk*nkr*kkiilkiqkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AD09 (FCL-AD09Q) /CSM/FCL/FCL-AD/FCL-AD09Q.Seq.d/                1174   0.0
SLG336 (SLG336Q) /CSM/SL/SLG3-B/SLG336Q.Seq.d/                       1142   0.0
AHD357 (AHD357Q) /CSM/AH/AHD3-C/AHD357Q.Seq.d/                       1142   0.0
VHD545 (VHD545Q) /CSM/VH/VHD5-B/VHD545Q.Seq.d/                       1126   0.0
AHN865 (AHN865Q) /CSM/AH/AHN8-C/AHN865Q.Seq.d/                       1108   0.0
SHD335 (SHD335Q) /CSM/SH/SHD3-B/SHD335Q.Seq.d/                       1084   0.0
CHP159 (CHP159Q) /CSM/CH/CHP1-C/CHP159Q.Seq.d/                       1082   0.0
VHL609 (VHL609Q) /CSM/VH/VHL6-A/VHL609Q.Seq.d/                       1068   0.0
AHO166 (AHO166Q) /CSM/AH/AHO1-C/AHO166Q.Seq.d/                        315   5e-85
SLD895 (SLD895Q) /CSM/SL/SLD8-D/SLD895Q.Seq.d/                        287   1e-76
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB817872|CB817872.1 a6a16pz.r1 Plumbago zeylanica sperm cell (Svn) cDNA library Plumbago zeylanica cDNA clone a6a16pz 5', mRNA sequence.    46  3e-05  2
CA932061|CA932061.1 MTU4TA.P26.D08 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
CA931907|CA931907.1 MTU4TA.P24.D10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
CA931766|CA931766.1 MTU4TA.P22.F10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
CA931118|CA931118.1 MTU2TA.P2.D07 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
CA931599|CA931599.1 MTU2TA.P9.E04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
CA931055|CA931055.1 MTU2TA.P1.D05 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
CA931587|CA931587.1 MTU2TA.P9.D02 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  4e-05  1
BE057869|BE057869.1 sn08c09.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-10889 5' similar to TR:O64605 O64605 F17O7.15 PROTEIN. ;, mRNA sequence.    46  0.002  2
AW755332|AW755332.1 sl01f12.y1 Gm-c1036 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1036-72 5' similar to TR:O64605 O64605 F17O7.15 PROTEIN. ;, mRNA sequence.    46  0.002  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008218_762(AP008218|pid:none) Oryza sativa (japonica cultivar-...   251   1e-65
(Q8GY23) RecName: Full=E3 ubiquitin-protein ligase UPL1;        ...   250   2e-65
BT060910_1(BT060910|pid:none) Zea mays full-length cDNA clone ZM...   249   4e-65
AP005590_16(AP005590|pid:none) Oryza sativa Japonica Group genom...   249   7e-65
BT069675_1(BT069675|pid:none) Zea mays full-length cDNA clone ZM...   248   9e-65
(Q8H0T4) RecName: Full=E3 ubiquitin-protein ligase UPL2;        ...   244   2e-63
AK230373_1(AK230373|pid:none) Arabidopsis thaliana mRNA for hypo...   244   2e-63
AM452363_7(AM452363|pid:none) Vitis vinifera contig VV78X124349....   244   2e-63
BC063505_1(BC063505|pid:none) Homo sapiens HECT, UBA and WWE dom...   242   9e-63
AY772009_1(AY772009|pid:none) Homo sapiens ARF-binding protein 1...   242   9e-63
protein update 2009. 4.14
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for FCL-AD09 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FCL-AD09Z
3' end seq. 
>FCL-AD09Z.Seq
----------CGATTCCATGAAAGTTATCGAATTGAAACCAAATGGTGCAAACATTCCTG
TCACTGAAGATAATAAATTAGAATATGTTCGTTTGGTTGCTTCCGTTAGAATGACAAACT
CAATCAAGGATCAAATCAATAGCTTCTTAGAAGGTTTCCACGAACTCATTCCAAAATCAT
TGATTGGTATTTTCAATGAAATGGAGTTGGAATTATTGATCAGTGGTCTTCCAGAGATTG
ATATCGATGATCTTCGTGCAAACACTGAATATAGTGGTTACTCTTCCGATTCTCAACAAA
TCCTTTGGTTCTGGAATACTGTTTCAAACTTTTCAAATGAAGAAAAAGCTTCACTCTTAC
AATTTGTCACTGGTACAAGTAAAGTACCTTTGGAAGGTTTCAAAGCTTTAGGTGGTATGG
GAGGCCCTCAAAAATTCCAAATTCATAGAATCAGAGGTAATGCTCACAGATTACCAACCG
CTCACACATGTTTCAATCAATTGGATATACCAGAATTTGAATCTCAAGAACAATTGACCA
AATTATTAAAAATTGCAATTGGTGAAGCTTCAGAAGGTTTTGGTTTTGTATAGATATATA
TTAAAAAAATAAACTAAAATAAAAAATAAAAAAAAAAAAATAAAATAAAAGATAAAAAAA
AATAATTTTAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 699
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -