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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AC28
Library FCL
(Link to library)
Clone ID FCL-AC28
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16045-1
Original site URL
Representative seq. ID FCL-AC28P
(Link to Original site)
Representative DNA sequence 
>FCL-AC28 (FCL-AC28Q) /CSM/FCL/FCL-AC/FCL-AC28Q.Seq.d/
TGTTTATTTTATTTATTTTATTTATTAATATACTTTTTTTAAAAAAAAAAAAAACAAAAA
AAAAAAAAACACCCAAAATTCCTAAAAAAGTTTTTAGATTAGATTTTTAGTTTTTTTTTC
CAAATTAGACACGTATAAAGAAATCCAACTTTTTTTTTTTTAGAAAAATATAATATAATC
ATAGAGGAAATGGTACCAACAACAGAATCACATGAAAATAATATGCCAGATAATGCAGCA
ATTACACAACAACAACAAGATGCAACCACATCAAGTTCATCATCAGTAGCAACTCAACCA
CCACAATCACAAATTCCACCACAACCACAATACCAATACCAAATGGCACCACCACCACAA
ACTCATCATGTACATCCACACCATGTACATCCACATCATCAACAACATCCAGGATATGTA
CCATCACACCACCACCATCATCAACAACATCACCATCACCATCCACATCATGTTGGTGTA
CCAAATTTACATCATTCAATTCATCAACAACAACATCCAGGATATGTACCATCACACCAT
CACCACCAACAACAACACCACCACCATCAACACCACACCAACATCATCAXXXXXXXXXXT
TTTTTTAGTTATTGCCAATGGTAATTTTATCAAAAGTAAAATAAGAACCTGGGAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATATAAAAAGTGCAAAAAAAAAAAAAAAAAAAAGT
GAAAAAAGAAAAAGAAAAAAAAAAAAGGTAAAAAAAAAAAAAC
sequence update 1996.12.25
Translated Amino Acid sequence 
clfylfylliyff*kkkkqkkkkhpkflkkfld*ifsfffqirhv*RNPTFFFLEKYNII
IEEMVPTTESHENNMPDNAAITQQQQDATTSSSSSVATQPPQSQIPPQPQYQYQMAPPPQ
THHVHPHHVHPHHQQHPGYVPSHHHHHQQHHHHHPHHVGVPNLHHSIHQQQHPGYVPSHH
HHQQQHHHHQHHTNII---

---FLVIANGNFIKSKIRTWEEKKKKKKKKKI*kvqkkkkkkvkkekekkkr*kkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
clfylfylliyff*kkkkqkkkkhpkflkkfld*ifsfffqirhv*RNPTFFFLEKYNII
IEEMVPTTESHENNMPDNAAITQQQQDATTSSSSSVATQPPQSQIPPQPQYQYQMAPPPQ
THHVHPHHVHPHHQQHPGYVPSHHHHHQQHHHHHPHHVGVPNLHHSIHQQQHPGYVPSHH
HHQQQHHHHQHHTNII---

---ff*llpmvilskvk*epgkkkkkkkkkkkykkckkkkkkk*kkkkkkkkgkkkk

Frame B:
vyfiyfiy*ytffkkkknkkkkntqns*ksf*irflvffskldtykeiqlfff*knii*s
*rkwyqqqnhmkiicqimqqlhnnnkmqphqvhhq*qlnhhnhkfhhnhntntkwhhhhk
limyihtmyihiinniqdmyhhtttiinnititihimlvyqiyiiqfinnniqdmyhhti
ttnnntttinttptss---

---ffsycqw*fyqk*nknlgrkkkkkkkkkniksakkkkkksekrkrkkkkvkkkk

Frame C:
filfilfinilflkkkktkkkktpkipkkvfrldf*fffpn*trikksnffffrki*ynh
rgngtnnrit*k*yar*csnyttttrcnhikfiissnstttitnsttttipipngttttn
ssctstpctstssttsrictitpppssttspspstscwctkftsfnsstttsrictitps
pptttpppstphqhh---

---FLVIANGNFIKSKIRTWEEKKKKKKKKKI*kvqkkkkkkvkkekekkkr*kkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AC28 (FCL-AC28Q) /CSM/FCL/FCL-AC/FCL-AC28Q.Seq.d/                 309   3e-83
VFI409 (VFI409Q) /CSM/VF/VFI4-A/VFI409Q.Seq.d/                         52   1e-05
FC-BH12 (FC-BH12Q) /CSM/FC/FC-BH/FC-BH12Q.Seq.d/                       50   5e-05
FC-393 (FC-393Q) /CSM/CG/CG-FC/FC-393Q.Seq.d/                          50   5e-05
VSJ235 (VSJ235Q) /CSM/VS/VSJ2-B/VSJ235Q.Seq.d/                         48   2e-04
VSG157 (VSG157Q) /CSM/VS/VSG1-C/VSG157Q.Seq.d/                         48   2e-04
VSE412 (VSE412Q) /CSM/VS/VSE4-A/VSE412Q.Seq.d/                         48   2e-04
VFK522 (VFK522Q) /CSM/VF/VFK5-A/VFK522Q.Seq.d/                         48   2e-04
VFH723 (VFH723Q) /CSM/VF/VFH7-A/VFH723Q.Seq.d/                         48   2e-04
SSL165 (SSL165Q) /CSM/SS/SSL1-C/SSL165Q.Seq.d/                         48   2e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ297608|AJ297608.1 Tomato spotted wilt virus N gene for nucleocapsid protein, genomic  RNA, isolate DH37.    42  3e-05  2
AJ296601|AJ296601.1 tomato spotted wilt virus n gene for nucleocapsid protein, isolate  8-Hip 96-12, genomic RNA.    42  3e-05  2
AJ418779|AJ418779.1 Tomato spotted wilt virus NSs gene and N gene, genomic RNA, isolate  DH37.    42  6e-05  2
AJ296602|AJ296602.1 tomato spotted wilt virus n gene for nucleocapsid protein, isolate  20 Da96/1, genomic RNA.    42  5e-04  2
AJ297609|AJ297609.1 Tomato spotted wilt virus N gene for nucleocapsid protein, genomic  RNA, isolate GD98.    42  5e-04  2
AJ418780|AJ418780.1 Tomato spotted wilt virus NSs gene and N gene, genomic RNA, isolate  GD98.    42  0.001  2
AJ418778|AJ418778.1 Tomato spotted wilt virus NSs gene and N gene, genomic RNA, isolate  10HK96.    42  0.001  2
BX119930|BX119930.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-18G4.    52  0.002  4
AC007336|AC007336.6 Homo sapiens chromosome 16 clone RP11-212I21, complete sequence.    54  0.003  1
AC091811|AC091811.7 Oryza sativa chromosome 3 BAC clone OSJNBa0069E14, complete sequence.    54  0.003  1
dna update 2003. 7.17
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 410,625,245
protein update 2009. 4.14
PSORT 

 psg: 0.66  gvh: 0.36  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for FCL-AC28 is nuc
5' end seq. ID FCL-AC28F
5' end seq. 
>FCL-AC28F.Seq
TGTTTATTTTATTTATTTTATTTATTAATATACTTTTTTTAAAAAAAAAAAAAACAAAAA
AAAAAAAAACACCCAAAATTCCTAAAAAAGTTTTTAGATTAGATTTTTAGTTTTTTTTTC
CAAATTAGACACGTATAAAGAAATCCAACTTTTTTTTTTTTAGAAAAATATAATATAATC
ATAGAGGAAATGGTACCAACAACAGAATCACATGAAAATAATATGCCAGATAATGCAGCA
ATTACACAACAACAACAAGATGCAACCACATCAAGTTCATCATCAGTAGCAACTCAACCA
CCACAATCACAAATTCCACCACAACCACAATACCAATACCAAATGGCACCACCACCACAA
ACTCATCATGTACATCCACACCATGTACATCCACATCATCAACAACATCCAGGATATGTA
CCATCACACCACCACCATCATCAACAACATCACCATCACCATCCACATCATGTTGGTGTA
CCAAATTTACATCATTCAATTCATCAACAACAACATCCAGGATATGTACCATCACACCAT
CACCACCAACAACAACACCACCACCATCAACACCACACCAACATCATCA----------
Length of 5' end seq. 589
3' end seq. ID FCL-AC28Z
3' end seq. 
>FCL-AC28Z.Seq
----------TTTTTTTAGTTATTGCCAATGGTAATTTTATCAAAAGTAAAATAAGAACC
TGGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAAAAGTGCAAAAAAAAAAA
AAAAAAAAAGTGAAAAAAGAAAAAGAAAAAAAAAAAAGGTAAAAAAAAAAAAAC
Length of 3' end seq. 164
Connected seq. ID FCL-AC28P
Connected seq. 
>FCL-AC28P.Seq
TGTTTATTTTATTTATTTTATTTATTAATATACTTTTTTTAAAAAAAAAAAAAACAAAAA
AAAAAAAAACACCCAAAATTCCTAAAAAAGTTTTTAGATTAGATTTTTAGTTTTTTTTTC
CAAATTAGACACGTATAAAGAAATCCAACTTTTTTTTTTTTAGAAAAATATAATATAATC
ATAGAGGAAATGGTACCAACAACAGAATCACATGAAAATAATATGCCAGATAATGCAGCA
ATTACACAACAACAACAAGATGCAACCACATCAAGTTCATCATCAGTAGCAACTCAACCA
CCACAATCACAAATTCCACCACAACCACAATACCAATACCAAATGGCACCACCACCACAA
ACTCATCATGTACATCCACACCATGTACATCCACATCATCAACAACATCCAGGATATGTA
CCATCACACCACCACCATCATCAACAACATCACCATCACCATCCACATCATGTTGGTGTA
CCAAATTTACATCATTCAATTCATCAACAACAACATCCAGGATATGTACCATCACACCAT
CACCACCAACAACAACACCACCACCATCAACACCACACCAACATCATCA----------T
TTTTTTAGTTATTGCCAATGGTAATTTTATCAAAAGTAAAATAAGAACCTGGGAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATATAAAAAGTGCAAAAAAAAAAAAAAAAAAAAGT
GAAAAAAGAAAAAGAAAAAAAAAAAAGGTAAAAAAAAAAAAAC
Length of connected seq. 753
Full length Seq ID -
Full length Seq. -
Length of full length seq. -