FCL-AC27
Library FCL
(Link to library)
Clone ID FCL-AC27
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID FCL-AC27Z
(Link to Original site)
Representative DNA sequence
>FCL-AC27 (FCL-AC27Q) /CSM/FCL/FCL-AC/FCL-AC27Q.Seq.d/
XXXXXXXXXXTTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTC
CTCCTCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTTATCACCATCGGTAA
TGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGC
TGGTATCCACGAAACCACATACAACTCCATCATGAAATGTGATGTCGATATCCGTAAAGA
TTTATACGGTAACGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCG
TATGAACAAAGAATTAACTGCTTTAGCCCCATCAACAATGAAAATTAAAATCATTGCTCC
ACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTT
CCAACAAATGTGGATCTCTAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAG
AAAATGTTTCTAAACAAACAAACAAAAAACTAGTGATGAAAGTGCTTCTCACAAATATTT
ATGTAAAATATATATATAATAAATTTTAATTTTTCTTTTTATTTTGTTTAGTTGTTGATC
TTTATCCGACTTTCCAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
---AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAG
IHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP
ERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tnkqktsdesashkylc
kiyi**iliflfilfsc*slsdfpnikkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---*ptspstlklkckllpppqpsknhtnyqtvklspsvmnvsvaqkpssnhhs*vwnql
vstkphttps*nvmsisvkiytvtssyqvvqlcsqvlliv*tkn*ll*phqq*klksllh
qnvntlsglvdls*lhsqlsnkcgslkknmtnqvhqlstenvskqtnkklvmkvlltniy
vkyiynkf*ffflfclvvdlyptfqi*kkkkkkkk


Frame B:
---slrrprl*s*nancclllsprkiiritrrssyhhr**tfplprsplptiilrygisw
yprnhiqlhhem*cryp*rfir*rrlirwynyvpryc*syeqrincfspinnen*nhcst
rt*ilcldwwiylsftlnfptnvdl*rri*rirsincpqkmflnkqtkn***kcfsqifm
*niyiinfnfsfyfv*llifirlskykkkkkkkkk


Frame C:
---AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAG
IHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP
ERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tnkqktsdesashkylc
kiyi**iliflfilfsc*slsdfpnikkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL183 (VFL183Q) /CSM/VF/VFL1-D/VFL183Q.Seq.d/ 1092 0.0
VFK285 (VFK285Q) /CSM/VF/VFK2-D/VFK285Q.Seq.d/ 1092 0.0
VFH756 (VFH756Q) /CSM/VF/VFH7-C/VFH756Q.Seq.d/ 1092 0.0
SFF549 (SFF549Q) /CSM/SF/SFF5-C/SFF549Q.Seq.d/ 1092 0.0
FCL-AC27 (FCL-AC27Q) /CSM/FCL/FCL-AC/FCL-AC27Q.Seq.d/ 1092 0.0
AFI406 (AFI406Q) /CSM/AF/AFI4-A/AFI406Q.Seq.d/ 1092 0.0
VFE803 (VFE803Q) /CSM/VF/VFE8-A/VFE803Q.Seq.d/ 1078 0.0
VFA416 (VFA416Q) /CSM/VF/VFA4-A/VFA416Q.Seq.d/ 1072 0.0
SFJ402 (SFJ402Q) /CSM/SF/SFJ4-A/SFJ402Q.Seq.d/ 1051 0.0
SFJ302 (SFJ302Q) /CSM/SF/SFJ3-A/SFJ302Q.Seq.d/ 1045 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 886 0.0 3
X03281|X03281.1 Dictyostelium discoideum gene for actin A8. 870 0.0 1
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 848 0.0 3
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 848 0.0 3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 807 0.0 3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 698 0.0 3
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 704 0.0 1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 706 0.0 7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 567 e-163 2
X03283|X03283.1 Dictyostelium discoideum gene for actin A3-S1. 502 e-143 2
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 322 4e-87
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 322 4e-87
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 322 4e-87
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 318 8e-86
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 318 8e-86
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 318 8e-86
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 315 5e-85
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 315 7e-85
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p... 314 1e-84
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 313 3e-84
protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.38 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for FCL-AC27 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FCL-AC27Z
3' end seq.
>FCL-AC27Z.Seq
----------TTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTC
CTCCTCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTTATCACCATCGGTAA
TGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGC
TGGTATCCACGAAACCACATACAACTCCATCATGAAATGTGATGTCGATATCCGTAAAGA
TTTATACGGTAACGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCG
TATGAACAAAGAATTAACTGCTTTAGCCCCATCAACAATGAAAATTAAAATCATTGCTCC
ACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTT
CCAACAAATGTGGATCTCTAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAG
AAAATGTTTCTAAACAAACAAACAAAAAACTAGTGATGAAAGTGCTTCTCACAAATATTT
ATGTAAAATATATATATAATAAATTTTAATTTTTCTTTTTATTTTGTTTAGTTGTTGATC
TTTATCCGACTTTCCAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 638
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -