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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AC23
Library FCL
(Link to library)
Clone ID FCL-AC23
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16043-1
Original site URL
Representative seq. ID FCL-AC23P
(Link to Original site)
Representative DNA sequence 
>FCL-AC23 (FCL-AC23Q) /CSM/FCL/FCL-AC/FCL-AC23Q.Seq.d/
ATTTTATTTATTTAATTTCACAACAAATTCATTCATTTTTTATTTTTTTTTTCAAATTTA
TATATTTATATTTTCATTTTTTTTTTTTTTTCATTTTTTTTTTATCTATTGTTTATTAAT
AAATTGTATTTGXXXXXXXXXXCCAAACGTTTCGATAGTGAGGTTAGTGGTGATAGAGAG
GTGCAACGTACAATGTTAGAGTTACTCAATCAATTGGATGGTTTCAGTAGTGATGCAAAT
ATCAAAGTTATCGCCGCCACCAATCGTATTGATATCTTGGATCCTGCTCTCTTGAGATCT
GGTCGTTTGGATAGAAAGATTGAATTCCCATTACCAAATGAAGAGGCTAGAGCTCATATC
CTTCAAATTCACTCTCGTAAGATGAACGTTTCCGCTGATGTTAATTTCGATGAGTTGGCA
CGTTCCTCTGAAGATTTCAATGGCGCTCAATTAAAAGCAGTTTGTGTCGAAGCTGGTATG
ATTGCACTTCGTAGAGGTGGTACAGAATTAATTCATAATGATTTTGTTGAAGGTTGTGTT
GAAGTTATGGCAAAGAAAAAGAAAACTTTAGAATACTATGCTTAAAAAAAAAAAAAAAAT
AATAATAAAAAATAAAAATTATAACAATAGTAATAAAACCTTTTAAATAATAATAATAAT
AAATTTTAAATAAATAAATAAAAAATAAAATAAATGTATTAAAGTTAAAAAAAAAAAAAA
AAAA
sequence update 1996.12.25
Translated Amino Acid sequence 
FYLFNFTTNSFIFYFFFQIYIFIFSFFFFFHFFFIYCLLINCI---

---KRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDR
KIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRR
GGTELIHNDFVEGCVEVMAKKKKTLEYYA*kkkknnnkk*kl*q***nllnnnnnkf*in
k*kik*my*s*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfi*fhnkfihflfffsnlyiyififfffsfffyllfinklyl---

---pnvsivrlvviercnvqc*sysinwmvsvvmqisklspppivliswills*dlvvwi
erlnshyqmkrlelisfkftlvr*tfplmlismswhvplkismaln*kqfvsklv*lhfv
evvqn*fimillkvvlklwqrkrkl*ntmlkkkkkiiiknknynnsnktf*iiiiinfk*
inkk*nkcikvkkkkkk

Frame B:
FYLFNFTTNSFIFYFFFQIYIFIFSFFFFFHFFFIYCLLINCI---

---qtfr**g*w**rgatynvrvtqsigwfq**ckyqsyrrhqsy*ylgscsleiwsfg*
kd*ipitk*rg*ssypsnsls*derfr*c*fr*vgtfl*rfqwrsiksslcrswydcts*
rwyrins**fc*rlc*sygkekenfrilclkkkkk***kikiitivikpfk*****ilnk
*iknkinvlklkkkkk

Frame C:
fiylisqqihsffifffkfiylyfhfffffifflsivy**ivf---

---KRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDR
KIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRR
GGTELIHNDFVEGCVEVMAKKKKTLEYYA*kkkknnnkk*kl*q***nllnnnnnkf*in
k*kik*my*s*kkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AC23 (FCL-AC23Q) /CSM/FCL/FCL-AC/FCL-AC23Q.Seq.d/                 892   0.0
AFN152 (AFN152Q) /CSM/AF/AFN1-C/AFN152Q.Seq.d/                        825   0.0
SFI130 (SFI130Q) /CSM/SF/SFI1-B/SFI130Q.Seq.d/                        817   0.0
VFB562 (VFB562Q) /CSM/VF/VFB5-C/VFB562Q.Seq.d/                        805   0.0
AFL812 (AFL812Q) /CSM/AF/AFL8-A/AFL812Q.Seq.d/                        801   0.0
CFI188 (CFI188Q) /CSM/CF/CFI1-D/CFI188Q.Seq.d/                        729   0.0
SFL201 (SFL201Q) /CSM/SF/SFL2-A/SFL201Q.Seq.d/                        718   0.0
SFF811 (SFF811Q) /CSM/SF/SFF8-A/SFF811Q.Seq.d/                        638   0.0
VSF680 (VSF680Q) /CSM/VS/VSF6-D/VSF680Q.Seq.d/                        636   0.0
SLA895 (SLA895Q) /CSM/SL/SLA8-D/SLA895Q.Seq.d/                        446   e-124
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI510050|BI510050.1 BB170023B10G11.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170023B10G11 5', mRNA sequence.    56  8e-24  4
BI507586|BI507586.1 BB170013B10D07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170013B10D07 5', mRNA sequence.    56  8e-24  4
BI506653|BI506653.1 BB170020B20A08 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170020B20A08 5', mRNA sequence.    56  1e-23  4
L16579|L16579.1 Dictyostelium discoideum HIV1 TAT-binding protein homologue (TBP1O) mRNA, 3' end.    84  3e-19  3
CD850824|CD850824.1 DH0AL15ZD03ZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR515D03, mRNA sequence.    56  4e-17  3
BI517212|BI517212.1 BB160024B20B03 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160024B20B03 5', mRNA sequence.    56  5e-17  3
BQ966728|BQ966728.1 QHB27L08.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB27L08, mRNA sequence.    56  6e-17  3
BQ969751|BQ969751.1 QHB39H03.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB39H03, mRNA sequence.    56  8e-17  3
AB071016|AB071016.1 Oryza sativa OsRPT5b mRNA for 26S proteasome regulatory particle triple-A ATPase subunit5b, partial cds.    58  2e-14  3
BU035527|BU035527.1 QHJ7E12.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHJ7E12, mRNA sequence.    56  3e-14  3
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT043367_1(BT043367|pid:none) Zea mays full-length cDNA clone ZM...   239   8e-62
BT034485_1(BT034485|pid:none) Zea mays full-length cDNA clone ZM...   239   8e-62
AP005056_24(AP005056|pid:none) Oryza sativa Japonica Group genom...   238   1e-61
BT040193_1(BT040193|pid:none) Zea mays full-length cDNA clone ZM...   238   1e-61
AP002854_15(AP002854|pid:none) Oryza sativa Japonica Group genom...   238   1e-61
AB071016_1(AB071016|pid:none) Oryza sativa Japonica Group OsRPT5...   238   1e-61
D17788_1(D17788|pid:none) Oryza sativa Japonica Group mRNA for h...   238   1e-61
(P54776) RecName: Full=26S protease regulatory subunit 6A homolo...   237   2e-61
(O04019) RecName: Full=26S protease regulatory subunit 6A homolo...   237   3e-61
AF412095_1(AF412095|pid:none) Arabidopsis thaliana At1g09100/F7G...   237   3e-61
protein update 2009. 4.14
PSORT 

 psg: 1.02  gvh: 0.53  alm: 0.23  top: 0.63  tms: 0.07  mit: 0.33  mip: 0.08
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FCL-AC23 is nuc
5' end seq. ID FCL-AC23F
5' end seq. 
>FCL-AC23F.Seq
ATTTTATTTATTTAATTTCACAACAAATTCATTCATTTTTTATTTTTTTTTTCAAATTTA
TATATTTATATTTTCATTTTTTTTTTTTTTTCATTTTTTTTTTATCTATTGTTTATTAAT
AAATTGTATTTG----------
Length of 5' end seq. 132
3' end seq. ID FCL-AC23Z
3' end seq. 
>FCL-AC23Z.Seq
----------CCAAACGTTTCGATAGTGAGGTTAGTGGTGATAGAGAGGTGCAACGTACA
ATGTTAGAGTTACTCAATCAATTGGATGGTTTCAGTAGTGATGCAAATATCAAAGTTATC
GCCGCCACCAATCGTATTGATATCTTGGATCCTGCTCTCTTGAGATCTGGTCGTTTGGAT
AGAAAGATTGAATTCCCATTACCAAATGAAGAGGCTAGAGCTCATATCCTTCAAATTCAC
TCTCGTAAGATGAACGTTTCCGCTGATGTTAATTTCGATGAGTTGGCACGTTCCTCTGAA
GATTTCAATGGCGCTCAATTAAAAGCAGTTTGTGTCGAAGCTGGTATGATTGCACTTCGT
AGAGGTGGTACAGAATTAATTCATAATGATTTTGTTGAAGGTTGTGTTGAAGTTATGGCA
AAGAAAAAGAAAACTTTAGAATACTATGCTTAAAAAAAAAAAAAAAATAATAATAAAAAA
TAAAAATTATAACAATAGTAATAAAACCTTTTAAATAATAATAATAATAAATTTTAAATA
AATAAATAAAAAATAAAATAAATGTATTAAAGTTAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 582
Connected seq. ID FCL-AC23P
Connected seq. 
>FCL-AC23P.Seq
ATTTTATTTATTTAATTTCACAACAAATTCATTCATTTTTTATTTTTTTTTTCAAATTTA
TATATTTATATTTTCATTTTTTTTTTTTTTTCATTTTTTTTTTATCTATTGTTTATTAAT
AAATTGTATTTG----------CCAAACGTTTCGATAGTGAGGTTAGTGGTGATAGAGAG
GTGCAACGTACAATGTTAGAGTTACTCAATCAATTGGATGGTTTCAGTAGTGATGCAAAT
ATCAAAGTTATCGCCGCCACCAATCGTATTGATATCTTGGATCCTGCTCTCTTGAGATCT
GGTCGTTTGGATAGAAAGATTGAATTCCCATTACCAAATGAAGAGGCTAGAGCTCATATC
CTTCAAATTCACTCTCGTAAGATGAACGTTTCCGCTGATGTTAATTTCGATGAGTTGGCA
CGTTCCTCTGAAGATTTCAATGGCGCTCAATTAAAAGCAGTTTGTGTCGAAGCTGGTATG
ATTGCACTTCGTAGAGGTGGTACAGAATTAATTCATAATGATTTTGTTGAAGGTTGTGTT
GAAGTTATGGCAAAGAAAAAGAAAACTTTAGAATACTATGCTTAAAAAAAAAAAAAAAAT
AATAATAAAAAATAAAAATTATAACAATAGTAATAAAACCTTTTAAATAATAATAATAAT
AAATTTTAAATAAATAAATAAAAAATAAAATAAATGTATTAAAGTTAAAAAAAAAAAAAA
AAAA
Length of connected seq. 714
Full length Seq ID -
Full length Seq. -
Length of full length seq. -