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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AC22
Library FCL
(Link to library)
Clone ID FCL-AC22
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14995-1
Original site URL
Representative seq. ID FCL-AC22P
(Link to Original site)
Representative DNA sequence 
>FCL-AC22 (FCL-AC22Q) /CSM/FCL/FCL-AC/FCL-AC22Q.Seq.d/
CGGACGCGTGAAAAAAAAAAATAATAATAAAAAAAAAAAAAACAATAATAATAATAATAA
TAATTAAATAAACATATAATGGATGGAGTTGTTAAAACTTCAATTTTAACAGCCATTAGT
GCAATAACTGTTTATGCTGGTTTATTTCTTTATTTAAATGGTGATGATGAAAACACTAAA
AAAAAAAATACAAAGAATAAAAAAAAGAAAAATAAATTAAAGACAACTTCAATTTTAAAT
ACTTCAAGTAGCAGCAGTAGCAGTAGCAGTAGTAGCAGTAGCAGTAGTAGTAGTATTAGT
AGAAACAGCAGTGACGATTTAGATATACCATATGGAAGTAGTAATAGTATTAATAGTGAA
AATAATAATAGTAGGAATAAATTTTTAGATGGTGAAGACGATGATAGCCATGAAATATCA
ACTTCCTCAAXXXXXXXXXXAAAAGATAATGGAAACTCGTTTCATTCCCACTCTTGTCAA
TTTAATTAATGATGATGATGCTGAAAGATCTGATTTTTCATTATTTTGTCTATTCAATAT
ATCTTCCAATGAGGAATGTGGAACAGAAATTATTTTATCTCAAGGTATTAAAGAAATTAT
ATCATTATTGGAATCAAAAAAAGCAAATATATCATTAAAAAAACAATGTTTACATATACT
ATTAAACATGTATTTAGAATCAAAAAATTTAAGAGAAATGATATCATCAGAAAATGAACA
ATTAATTAATGTTTTAAAAATAATAAAACAAACTCAAAAGAATGATCTCTCTGAATTGGC
TTCTAAAATTTTACAAATTGATACCGATCACCAAAATTTAATAAATACAAACGATTTCAA
TGATAAAAATATTAAACCTTTATATATAGAAGATGAAGAGGATGAAGATGATGATGAATA
GGGATATTAATTTATGAATAATATATTATAATAAAAAATAATAATTGACCAATAAAAAAA
A
sequence update 1996.12.25
Translated Amino Acid sequence 
rtrekkk***kkkkq******LNKHIMDGVVKTSILTAISAITVYAGLFLYLNGDDENTK
KKNTKNKKKKNKLKTTSILNTSSSSSSSSSSSSSSSSSISRNSSDDLDIPYGSSNSINSE
NNNSRNKFLDGEDDDSHEISTSS---

---KIMETRFIPTLVNLINDDDAERSDFSLFCLFNISSNEECGTEIILSQGIKEIISLLE
SKKANISLKKQCLHILLNMYLESKNLREMISSENEQLINVLKIIKQTQKNDLSELASKIL
QIDTDHQNLINTNDFNDKNIKPLYIEDEEDEDDDE*gy*fmnnil**kiiidq*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
rtrekkk***kkkkq******LNKHIMDGVVKTSILTAISAITVYAGLFLYLNGDDENTK
KKNTKNKKKKNKLKTTSILNTSSSSSSSSSSSSSSSSSISRNSSDDLDIPYGSSNSINSE
NNNSRNKFLDGEDDDSHEISTSS---

---kr*wklvsfpllsi*lmmmmlkdlifhyfvysiylpmrnveqklfylkvlkklyhyw
nqkkqiyh*knnvyiyy*tci*nqki*ek*yhqkmnn*lmf*k**nklkrmislnwllkf
yklipitki**iqtismikilnlyi*kmkrmkmmmnrdinl*iiyynkk**ltnkk

Frame B:
grvkkknnnkkkknnnnnnnn*ini*wmellklqf*qplvq*lfmlvyffi*mvmmktlk
kkiqrikkrkin*rqlqf*ilqvaavavavvavavvvvlvetavti*iyhmevvivlivk
iiivginf*mvktmiamkyqlpq---

---kdngnsfhshscqfn****c*ki*ffiilsiqyifq*gmwnrnyfisry*rnyiiig
ikkskyiikktmftytikhvfrikkfkrndiirk*tin*cfknnktnske*sl*igf*nf
tn*yrspkfnkykrfq**ky*tfiyrr*rg*r***igiliye*yiiiknnn*pikk

Frame C:
da*kkkiiikkkktiiiiiiik*tyngwsc*nfnfnsh*cnnclcwfislfkw***kh*k
kkyke*kkek*ikdnfnfkyfk*qq*q*q**q*q***y**kqq*rfrytiwk***y***k
****e*ifrw*rr**p*ninfl---

---KIMETRFIPTLVNLINDDDAERSDFSLFCLFNISSNEECGTEIILSQGIKEIISLLE
SKKANISLKKQCLHILLNMYLESKNLREMISSENEQLINVLKIIKQTQKNDLSELASKIL
QIDTDHQNLINTNDFNDKNIKPLYIEDEEDEDDDE*gy*fmnnil**kiiidq*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AC22 (FCL-AC22Q) /CSM/FCL/FCL-AC/FCL-AC22Q.Seq.d/                1148   0.0
SSM534 (SSM534Q) /CSM/SS/SSM5-B/SSM534Q.Seq.d/                        934   0.0
AFL559 (AFL559Q) /CSM/AF/AFL5-C/AFL559Q.Seq.d/                        819   0.0
AFI526 (AFI526Q) /CSM/AF/AFI5-B/AFI526Q.Seq.d/                        815   0.0
VFE142 (VFE142Q) /CSM/VF/VFE1-B/VFE142Q.Seq.d/                        779   0.0
VFM567 (VFM567Q) /CSM/VF/VFM5-C/VFM567Q.Seq.d/                        775   0.0
CHA273 (CHA273Q) /CSM/CH/CHA2-D/CHA273Q.Seq.d/                        718   0.0
CHD882 (CHD882Q) /CSM/CH/CHD8-D/CHD882Q.Seq.d/                        706   0.0
SSM393 (SSM393Q) /CSM/SS/SSM3-D/SSM393Q.Seq.d/                         46   0.001
SSK142 (SSK142Q) /CSM/SS/SSK1-B/SSK142Q.Seq.d/                         46   0.001
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40  2e-09  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40  2e-08  11
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40  2e-07  9
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    42  3e-07  11
AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    44  5e-07  7
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38  6e-07  12
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          50  6e-07  10
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    44  8e-07  13
AE010630|AE010630.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 172 of 197 of the complete genome.    30  9e-07  8
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    46  2e-06  11
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF165818_122(AF165818|pid:none) Guillardia theta nucleomorph chr...    45   0.005
AE010299_2016(AE010299|pid:none) Methanosarcina acetivorans str....    41   0.050
AB168425_1(AB168425|pid:none) Macaca fascicularis testis cDNA cl...    39   0.19
CR859440_1(CR859440|pid:none) Pongo abelii mRNA; cDNA DKFZp469M0...    39   0.19
AE014187_109(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.43
AF250284_275(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    38   0.43
AK041744_1(AK041744|pid:none) Mus musculus 3 days neonate thymus...    38   0.43
(A2AU72) RecName: Full=Armadillo repeat-containing protein 3;  &...    38   0.43
(Q89AB4) RecName: Full=Exodeoxyribonuclease V gamma chain;      ...    38   0.56
CU469464_54(CU469464|pid:none) Candidatus Phytoplasma mali strai...    38   0.56
protein update 2009. 4.14
PSORT 

 psg: 0.93  gvh: 0.53  alm: 0.30  top: 0.63  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FCL-AC22 is nuc
5' end seq. ID FCL-AC22F
5' end seq. 
>FCL-AC22F.Seq
CGGACGCGTGAAAAAAAAAAATAATAATAAAAAAAAAAAAAACAATAATAATAATAATAA
TAATTAAATAAACATATAATGGATGGAGTTGTTAAAACTTCAATTTTAACAGCCATTAGT
GCAATAACTGTTTATGCTGGTTTATTTCTTTATTTAAATGGTGATGATGAAAACACTAAA
AAAAAAAATACAAAGAATAAAAAAAAGAAAAATAAATTAAAGACAACTTCAATTTTAAAT
ACTTCAAGTAGCAGCAGTAGCAGTAGCAGTAGTAGCAGTAGCAGTAGTAGTAGTATTAGT
AGAAACAGCAGTGACGATTTAGATATACCATATGGAAGTAGTAATAGTATTAATAGTGAA
AATAATAATAGTAGGAATAAATTTTTAGATGGTGAAGACGATGATAGCCATGAAATATCA
ACTTCCTCAA--------------------
Length of 5' end seq. 430
3' end seq. ID FCL-AC22Z
3' end seq. 
>FCL-AC22Z.Seq
----------AAAAGATAATGGAAACTCGTTTCATTCCCACTCTTGTCAATTTAATTAAT
GATGATGATGCTGAAAGATCTGATTTTTCATTATTTTGTCTATTCAATATATCTTCCAAT
GAGGAATGTGGAACAGAAATTATTTTATCTCAAGGTATTAAAGAAATTATATCATTATTG
GAATCAAAAAAAGCAAATATATCATTAAAAAAACAATGTTTACATATACTATTAAACATG
TATTTAGAATCAAAAAATTTAAGAGAAATGATATCATCAGAAAATGAACAATTAATTAAT
GTTTTAAAAATAATAAAACAAACTCAAAAGAATGATCTCTCTGAATTGGCTTCTAAAATT
TTACAAATTGATACCGATCACCAAAATTTAATAAATACAAACGATTTCAATGATAAAAAT
ATTAAACCTTTATATATAGAAGATGAAGAGGATGAAGATGATGATGAATAGGGATATTAA
TTTATGAATAATATATTATAATAAAAAATAATAATTGACCAATAAAAAAAA
Length of 3' end seq. 521
Connected seq. ID FCL-AC22P
Connected seq. 
>FCL-AC22P.Seq
CGGACGCGTGAAAAAAAAAAATAATAATAAAAAAAAAAAAAACAATAATAATAATAATAA
TAATTAAATAAACATATAATGGATGGAGTTGTTAAAACTTCAATTTTAACAGCCATTAGT
GCAATAACTGTTTATGCTGGTTTATTTCTTTATTTAAATGGTGATGATGAAAACACTAAA
AAAAAAAATACAAAGAATAAAAAAAAGAAAAATAAATTAAAGACAACTTCAATTTTAAAT
ACTTCAAGTAGCAGCAGTAGCAGTAGCAGTAGTAGCAGTAGCAGTAGTAGTAGTATTAGT
AGAAACAGCAGTGACGATTTAGATATACCATATGGAAGTAGTAATAGTATTAATAGTGAA
AATAATAATAGTAGGAATAAATTTTTAGATGGTGAAGACGATGATAGCCATGAAATATCA
ACTTCCTCAA----------AAAAGATAATGGAAACTCGTTTCATTCCCACTCTTGTCAA
TTTAATTAATGATGATGATGCTGAAAGATCTGATTTTTCATTATTTTGTCTATTCAATAT
ATCTTCCAATGAGGAATGTGGAACAGAAATTATTTTATCTCAAGGTATTAAAGAAATTAT
ATCATTATTGGAATCAAAAAAAGCAAATATATCATTAAAAAAACAATGTTTACATATACT
ATTAAACATGTATTTAGAATCAAAAAATTTAAGAGAAATGATATCATCAGAAAATGAACA
ATTAATTAATGTTTTAAAAATAATAAAACAAACTCAAAAGAATGATCTCTCTGAATTGGC
TTCTAAAATTTTACAAATTGATACCGATCACCAAAATTTAATAAATACAAACGATTTCAA
TGATAAAAATATTAAACCTTTATATATAGAAGATGAAGAGGATGAAGATGATGATGAATA
GGGATATTAATTTATGAATAATATATTATAATAAAAAATAATAATTGACCAATAAAAAAA
A
Length of connected seq. 951
Full length Seq ID -
Full length Seq. -
Length of full length seq. -