FCL-AC20
Library FCL
(Link to library)
Clone ID FCL-AC20
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15117-1
Original site URL
Representative seq. ID FCL-AC20Z
(Link to Original site)
Representative DNA sequence
>FCL-AC20 (FCL-AC20Q) /CSM/FCL/FCL-AC/FCL-AC20Q.Seq.d/
XXXXXXXXXXAAAAAACAAGTAAGTTATAATATTAGAAGAAGTAAACGAGAACGACTATT
TCAGAAATCGAGTACGCAGGCAACCGTCTTTAAAAAATTAAGTGTATCAAACTCGGCGTA
TTTACAATACTTGGCTAATTATAATTTTGGAGAAAGACAACAATTGGCACCCGAATTATT
AAATGAGCTACGAAATCAACTTCCAGAAAAGAACGCAAGTATCAACAGTGAAGAAAGTAA
CTTATTAAGTAACGATTATAAAATAAGTTCACAAAAGAACAGTAAGAACATTATAAGGTT
AACGGCGACAAATGAATATAATTATAAATATAGTAAATTTAACAATAAATGGTGTAAATT
ACTACTAATAAAAAAACAATTAAAAAGTAAAGAAGAAACGTATAGAACAAAAGCGTTACT
TTACAATTTATTAAGAACGAAAACAGTAGGAGAAAAAGTAGAAAAATGTGTAAGTAAAAT
TAAAAAAGTAATTCAGAAAAAAACAGAACCTGTAGTTAACATTAAAAAAGTAATTATAAA
CAAACAAAAAATTGTTAATAACCAGAGATATAATAAAAACGGACAAAAATTTAAGTTTAA
GAAGCATCGT
sequence update 1996.12.25
Translated Amino Acid sequence
---KQVSYNIRRSKRERLFQKSSTQATVFKKLSVSNSAYLQYLANYNFGERQQLAPELLN
ELRNQLPEKNASINSEESNLLSNDYKISSQKNSKNIIRLTATNEYNYKYSKFNNKWCKLL
LIKKQLKSKEETYRTKALLYNLLRTKTVGEKVEKCVSKIKKVIQKKTEPVVNIKKVIINK
QKIVNNQRYNKNGQKFKFKKHR


Translated Amino Acid sequence (All Frames)
Frame A:
---knk*viileevnendyfrnrvrrqpslkn*vyqtrriyntwliiilekdnnwhpny*
msyeinfqkrtqvstvkkvty*vtiik*vhkrtvrtl*g*rrqmniiinivnltingvny
y**knn*kvkkkrieqkryftiy*erkq*ekk*knv*vklkk*frkkqnl*ltlkk*l*t
nkkllitrdiiktdknlslrsi


Frame B:
---ktskl*y*kk*trttiseieyagnrl*kikciklgvftilg*l*fwrkttigtriik
*atkstsrkerkyqq*rk*lik*rl*nkftkeq*ehykvngdk*i*l*i**i*q*mv*it
tnkktikk*rrnv*nksvtlqfiknensrrksrkmck*n*ksnseknrtcs*h*ksnykq
tknc**pei**krtki*v*eas


Frame C:
---KQVSYNIRRSKRERLFQKSSTQATVFKKLSVSNSAYLQYLANYNFGERQQLAPELLN
ELRNQLPEKNASINSEESNLLSNDYKISSQKNSKNIIRLTATNEYNYKYSKFNNKWCKLL
LIKKQLKSKEETYRTKALLYNLLRTKTVGEKVEKCVSKIKKVIQKKTEPVVNIKKVIINK
QKIVNNQRYNKNGQKFKFKKHR


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AC20 (FCL-AC20Q) /CSM/FCL/FCL-AC/FCL-AC20Q.Seq.d/ 809 0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/ 801 0.0
VSA565 (VSA565Q) /CSM/VS/VSA5-C/VSA565Q.Seq.d/ 153 4e-36
VFN858 (VFN858Q) /CSM/VF/VFN8-C/VFN858Q.Seq.d/ 36 0.60
VFM318 (VFM318Q) /CSM/VF/VFM3-A/VFM318Q.Seq.d/ 36 0.60
VFK768 (VFK768Q) /CSM/VF/VFK7-C/VFK768Q.Seq.d/ 36 0.60
VFH282 (VFH282Q) /CSM/VF/VFH2-D/VFH282Q.Seq.d/ 36 0.60
SSM427 (SSM427Q) /CSM/SS/SSM4-B/SSM427Q.Seq.d/ 36 0.60
SSM319 (SSM319Q) /CSM/SS/SSM3-A/SSM319Q.Seq.d/ 36 0.60
SSK677 (SSK677Q) /CSM/SS/SSK6-D/SSK677Q.Seq.d/ 36 0.60

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D21196|D21196.1 Dictyostelium discoideum mitochondrial DNA. 704 0.0 3
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence. 704 0.0 3
AC135223|AC135223.2 Gallus gallus clone TAM33-45A19, WORKING DRAFT SEQUENCE, 6 ordered pieces. 38 0.045 4
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 44 0.16 6
AE015936|AE015936.1 Clostridium tetani E88, section 1 of 10 of the complete genome. 32 0.21 9
AC060832|AC060832.2 Homo sapiens chromosome 12 clone RP11-545I15, WORKING DRAFT SEQUENCE, 14 unordered pieces. 34 0.24 7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.43 10
BB196541|BB196541.2 Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330094N15, 3' end partial sequence. 46 0.49 1
BB387893|BB387893.2 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230053I19, 3' end partial sequence. 46 0.49 1
BB817518|BB817518.1 Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730039O22, 3' end partial sequence. 46 0.49 1
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondr... 80 4e-14
CP000123_41(CP000123|pid:none) Mycoplasma capricolum subsp. capr... 33 7.8

protein update 2008.11.11
PSORT

psg: 0.35 gvh: 0.35 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.04
nuc: 0.15 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
28.0 %: mitochondrial

>> prediction for FCL-AC20 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FCL-AC20Z
3' end seq.
>FCL-AC20Z.Seq
----------AAAAAACAAGTAAGTTATAATATTAGAAGAAGTAAACGAGAACGACTATT
TCAGAAATCGAGTACGCAGGCAACCGTCTTTAAAAAATTAAGTGTATCAAACTCGGCGTA
TTTACAATACTTGGCTAATTATAATTTTGGAGAAAGACAACAATTGGCACCCGAATTATT
AAATGAGCTACGAAATCAACTTCCAGAAAAGAACGCAAGTATCAACAGTGAAGAAAGTAA
CTTATTAAGTAACGATTATAAAATAAGTTCACAAAAGAACAGTAAGAACATTATAAGGTT
AACGGCGACAAATGAATATAATTATAAATATAGTAAATTTAACAATAAATGGTGTAAATT
ACTACTAATAAAAAAACAATTAAAAAGTAAAGAAGAAACGTATAGAACAAAAGCGTTACT
TTACAATTTATTAAGAACGAAAACAGTAGGAGAAAAAGTAGAAAAATGTGTAAGTAAAAT
TAAAAAAGTAATTCAGAAAAAAACAGAACCTGTAGTTAACATTAAAAAAGTAATTATAAA
CAAACAAAAAATTGTTAATAACCAGAGATATAATAAAAACGGACAAAAATTTAAGTTTAA
GAAGCATCGT
Length of 3' end seq. 600
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -