FCL-AC11
Library FCL
(Link to library)
Clone ID FCL-AC11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16036-1
Original site URL
Representative seq. ID FCL-AC11F
(Link to Original site)
Representative DNA sequence
>FCL-AC11 (FCL-AC11Q) /CSM/FCL/FCL-AC/FCL-AC11Q.Seq.d/
CTTTGGAAAAATCAAAAAAATCAAAAAAAAAAAAAAAAATCAAATTTATTCAAAAAAACC
AATTAATCTAATCAAAGAAACGTCAAAATATAAAAAAAATAATAGTAAAAATAACTATCA
TTACCAATAAATTTAATATTTAATAAAAAATATAAATATATATATATNNNNNNTTATAAA
ANGGGTTGTAATTCAAGTAGTGAAGCAAAGCAAAGCGATAAAATCGATAGAACTTTATAT
GATGAAAAGAAAAGTCAAGAAAGAGAAATTAAATTATTATTATTAGGTAGTGGTGATTCT
GGTAAAAGTACCATTGCCAAACAAATGCGTTACATTCATACAAAAGGTTTCTCAAATGAA
GAAATTGCAACATTTGTTGAAATTATGCATAGTAATGTTTTATCATCAATTCAAATTTTA
ATCCGTAATGTTCCAGTTGAACAATTAGGTAGTGATTTAAAAGATAAAGCAAATTATTAT
TCAAGTATTAATCCATATGAATTACCATTAACACCGGATATTGGTTTAGAAXXXXXXXXX
XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
lwknqknqkkkkksnlfkktn*snqrnvki*kk***k*LSLPINLIFNKKYKYIYXXXYK
XGCNSSSEAKQSDKIDRTLYDEKKSQEREIKLLLLGSGDSGKSTIAKQMRYIHTKGFSNE
EIATFVEIMHSNVLSSIQILIRNVPVEQLGSDLKDKANYYSSINPYELPLTPDIGLE---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
lwknqknqkkkkksnlfkktn*snqrnvki*kk***k*LSLPINLIFNKKYKYIYXXXYK
XGCNSSSEAKQSDKIDRTLYDEKKSQEREIKLLLLGSGDSGKSTIAKQMRYIHTKGFSNE
EIATFVEIMHSNVLSSIQILIRNVPVEQLGSDLKDKANYYSSINPYELPLTPDIGLE---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
fgkikkikkkkknqiyskkpinliketskykknnsknnyhyq*i*ylikniniyixxxik
xvviqvvkqskaiksielymmkrkvkkeklnyyy*vvvilvkvplpnkcvtfiqkvsqmk
klqhllklcivmfyhqfkf*svmfqlnn*vvi*kikqiiiqvlihmnyh*hrilv*---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame C:
lekskkskkkkkikfiqknqli*skkrqnikkiivkitiitnkfni**ki*iyiyxxl*x
gl*fk**skakr*nr*nfi**keksrkrn*iiiir*w*fw*kyhcqtnalhsykrflk*r
ncnic*nya**cfiinsnfnp*css*tir**fkr*skllfky*si*itintgywfr---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AC11 (FCL-AC11Q) /CSM/FCL/FCL-AC/FCL-AC11Q.Seq.d/ 692 0.0
SSB349 (SSB349Q) /CSM/SS/SSB3-C/SSB349Q.Seq.d/ 283 2e-75
FC-BL01 (FC-BL01Q) /CSM/FC/FC-BL/FC-BL01Q.Seq.d/ 56 7e-07
FC-BJ21 (FC-BJ21Q) /CSM/FC/FC-BJ/FC-BJ21Q.Seq.d/ 56 7e-07
FC-489 (FC-489Q) /CSM/CG/CG-FC/FC-489Q.Seq.d/ 56 7e-07
FC-IC0564 (FC-IC0564Q) /CSM/FC-IC/FC-IC0564Q.Seq.d/ 50 4e-05
VSH767 (VSH767Q) /CSM/VS/VSH7-C/VSH767Q.Seq.d/ 48 2e-04
CHE696 (CHE696Q) /CSM/CH/CHE6-D/CHE696Q.Seq.d/ 48 2e-04
AFI568 (AFI568Q) /CSM/AF/AFI5-C/AFI568Q.Seq.d/ 48 2e-04
SLJ468 (SLJ468Q) /CSM/SL/SLJ4-C/SLJ468Q.Seq.d/ 42 0.011

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence. 48 0.006 3
CC196020|CC196020.1 ZMMBBc0319C13r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0319C13 3', DNA sequence. 46 0.014 2
CC670412|CC670412.1 OGVAV33TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0492E18, genomic survey sequence. 48 0.14 1
L33847|L33847.1 Dictyostelium discoideum G protein alpha-7 subunit mRNA, complete cds. 48 0.14 1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 40 0.22 2
AC051662|AC051662.3 Homo sapiens chromosome 12 clone RP11-463N10, WORKING DRAFT SEQUENCE, 24 unordered pieces. 36 0.34 3
BP189712|BP189712.1 Dugesia japonica cDNA, clone: 07145_HH, expressed in the head. 38 0.37 2
AA528848|AA528848.1 MAAD0280.RAR Schistosoma mansoni, adult worm (J.C.Parra) Schistosoma mansoni cDNA clone MAAD0280.RAR 5' end similar to mansoni dynein light chain mRNA, complete cds, mRNA sequence. 40 0.52 2
AC105021|AC105021.6 Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence. 46 0.54 1
AC034124|AC034124.3 Homo sapiens chromosome 17 clone RP11-664G15 map 17, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 0.54 1
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R41) RecName: Full=Guanine nucleotide-binding protein alpha-... 200 3e-50
(P54853) RecName: Full=Guanine nucleotide-binding protein subuni... 56 8e-07
BX005248_1(BX005248|pid:none) Zebrafish DNA sequence from clone ... 55 1e-06
AY219895_1(AY219895|pid:none) Cryptococcus neoformans var. grubi... 55 1e-06
(Q00743) RecName: Full=Guanine nucleotide-binding protein subuni... 55 2e-06
AJ294815_1(AJ294815|pid:none) Tapesia yallundae tyg1 gene for G ... 54 3e-06
AF050653_1(AF050653|pid:none) Ambystoma tigrinum rod transducin ... 54 4e-06
BC049537_1(BC049537|pid:none) Danio rerio guanine nucleotide bin... 54 5e-06
AF521583_1(AF521583|pid:none) Loligo pealei visual iGq-alpha pro... 54 5e-06
AY328525_1(AY328525|pid:none) Gekko gecko photoreceptor transduc... 53 7e-06
protein update 2009. 4.14
PSORT

psg: 0.58 gvh: 0.42 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 5.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for FCL-AC11 is nuc

5' end seq. ID FCL-AC11F
5' end seq.
>FCL-AC11F.Seq
CTTTGGAAAAATCAAAAAAATCAAAAAAAAAAAAAAAAATCAAATTTATTCAAAAAAACC
AATTAATCTAATCAAAGAAACGTCAAAATATAAAAAAAATAATAGTAAAAATAACTATCA
TTACCAATAAATTTAATATTTAATAAAAAATATAAATATATATATATNNNNNNTTATAAA
ANGGGTTGTAATTCAAGTAGTGAAGCAAAGCAAAGCGATAAAATCGATAGAACTTTATAT
GATGAAAAGAAAAGTCAAGAAAGAGAAATTAAATTATTATTATTAGGTAGTGGTGATTCT
GGTAAAAGTACCATTGCCAAACAAATGCGTTACATTCATACAAAAGGTTTCTCAAATGAA
GAAATTGCAACATTTGTTGAAATTATGCATAGTAATGTTTTATCATCAATTCAAATTTTA
ATCCGTAATGTTCCAGTTGAACAATTAGGTAGTGATTTAAAAGATAAAGCAAATTATTAT
TCAAGTATTAATCCATATGAATTACCATTAACACCGGATATTGGTTTAGAA---------
-
Length of 5' end seq. 531
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -