NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AC03
Library FCL
(Link to library)
Clone ID FCL-AC03
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID FCL-AC03P
(Link to Original site)
Representative DNA sequence 
>FCL-AC03 (FCL-AC03Q) /CSM/FCL/FCL-AC/FCL-AC03Q.Seq.d/
AATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTTATTAGTCATTATAAAAT
TGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTTTATTGAT
TAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTGGGCATTC
TTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAAGAAGAGA
TCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACGACCTTGA
TGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGAGTGAAGA
TGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTGTATGTTT
GCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAAGAGGTTCACG
TAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAATTAAATXX
XXXXXXXXAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAA
TTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTT
CCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACA
CTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCAAAGATCA
CCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCA
AAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTT
TCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAA
TCGCAAAGAAACCTTATTATCCAATATTTTTATTATCAGGTTTTAGTGGTTTTGATGGTT
CTTTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTAATAATAAACAAAAAAG
GTTTTTTTTTTTGTTCGAATAAACTTATAAAATATAAT
sequence update 1996.12.25
Translated Amino Acid sequence 
ifkkkrk*kkk*YFISHYKIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHS
SEHTKNELKVASKTSKKRRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSED
EETPGMCCECTDQPAEVVCLQCQDELCTVCSTSLHRRGSRRSHIFKNKHGQELDYDELN-
--

---NTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHNVPNSLVFIDKY
TQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFFKHAFDGSGADNF
FDAGSCIDGRLTSAWQWSAQIAKKPYYPIFLLSGFSGFDGSFN*kkkkkkkknkviinkk
gfffcsnklikyn
Translated Amino Acid sequence (All Frames) 
Frame A:
nf*kkkkikkkiify*sl*ncelytklsnr*fspnirfid*pnntcsnn*lgi*fifwaf
f*tyqkrvkggvqnfkkkkrsi*rnvktk*inksfg*rp**yryrrr*lnqs*i*iye*r
*rnsryvl*myrsts*scmfamsr*tlyslfnftp*krft*vtyf*k*twsrt*l**ik-
--

---NTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHNVPNSLVFIDKY
TQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFFKHAFDGSGADNF
FDAGSCIDGRLTSAWQWSAQIAKKPYYPIFLLSGFSGFDGSFN*kkkkkkkknkviinkk
gfffcsnklikyn

Frame B:
ifkkkrk*kkk*YFISHYKIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHS
SEHTKNELKVASKTSKKRRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSED
EETPGMCCECTDQPAEVVCLQCQDELCTVCSTSLHRRGSRRSHIFKNKHGQELDYDELN-
--

---tlvkv*ivfnnvqtlvklcivfyvklkkklvmiglvlplfiwviitfqtlwfssint
lksles*vqsf*plnifqrspiqi*lltsktplvvhkl*pkssfvislntlsmvvvpitf
smlalvlmvd*lllgngllksqrnliiqyfyyqvlvvlmvllikkkkkkkkkik***tkk
vfffvrinl*ni

Frame C:
flkkkenkkknnillviikl*iiyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgil
lnipkts*rwrpklqkkeeinlkkcqnkin*qkfwittlmi*i*kkmtqpivnlnl*vkm
kklqvcavnvqinqlklyvcnvkmnfvqfvqlhsieevhvghiflkinmvknlimmn*--
-

---hwsrsksystmskrw*nya*ystsnskksw**lgwffrysfg*s*rsklfgfhr*ih
snl*npksnrfnh*iyskdhrskfsclhqkhlwwstnfnqnhpl*fl*trfrw*wcr*lf
rcwlly*w*infclamvcsnrketllsnifiirf*wf*wff*lkkkkkkkkk*snnkqkr
ffflfe*tyki*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AC03 (FCL-AC03Q) /CSM/FCL/FCL-AC/FCL-AC03Q.Seq.d/                1818   0.0
CHI139 (CHI139Q) /CSM/CH/CHI1-B/CHI139Q.Seq.d/                        950   0.0
SSM739 (SSM739Q) /CSM/SS/SSM7-B/SSM739Q.Seq.d/                        944   0.0
CHD280 (CHD280Q) /CSM/CH/CHD2-D/CHD280Q.Seq.d/                        944   0.0
AHA156 (AHA156Q) /CSM/AH/AHA1-C/AHA156Q.Seq.d/                        920   0.0
CHL110 (CHL110Q) /CSM/CH/CHL1-A/CHL110Q.Seq.d/                        916   0.0
VHI541 (VHI541Q) /CSM/VH/VHI5-B/VHI541Q.Seq.d/                        910   0.0
SLB548 (SLB548Q) /CSM/SL/SLB5-B/SLB548Q.Seq.d/                        906   0.0
VHG851 (VHG851Q) /CSM/VH/VHG8-C/VHG851Q.Seq.d/                        860   0.0
CHL491 (CHL491Q) /CSM/CH/CHL4-D/CHL491Q.Seq.d/                        860   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                 36  0.067  10
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    32  0.21  11
AX323619|AX323619.1 Sequence 107 from Patent WO0192565.           36  0.25  4
AX277932|AX277932.1 Sequence 95 from Patent WO0177375.            36  0.25  4
AC124218|AC124218.17 Medicago truncatula clone mth2-30b20, complete sequence.    42  0.29  5
AC021798|AC021798.5 Homo sapiens clone RP11-25K3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    48  0.41  3
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    34  0.48  8
BB177270|BB177270.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230066A19, 3' end partial sequence.    34  0.55  2
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    34  0.78  10
AQ973805|AQ973805.1 RPCI-23-313N9.TJ RPCI-23 Mus musculus genomic clone RPCI-23-313N9, genomic survey sequence.    46  0.92  1
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara...   212   2e-53
CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   206   9e-52
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr...   197   5e-49
AL844507_193(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...   196   1e-48
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   191   3e-47
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ...   172   2e-41
AM494971_416(AM494971|pid:none) Leishmania braziliensis chromoso...   171   4e-41
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35.    171   5e-41
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c...   167   4e-40
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   167   6e-40
protein update 2009. 4.14
PSORT 

 psg: 0.73  gvh: 0.50  alm: 0.11  top: 0.63  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for FCL-AC03 is nuc
5' end seq. ID FCL-AC03F
5' end seq. 
>FCL-AC03F.Seq
AATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTTATTAGTCATTATAAAAT
TGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTTTATTGAT
TAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTGGGCATTC
TTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAAGAAGAGA
TCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACGACCTTGA
TGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGAGTGAAGA
TGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTGTATGTTT
GCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAAGAGGTTCACG
TAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAATTAAAT--
--------
Length of 5' end seq. 538
3' end seq. ID FCL-AC03Z
3' end seq. 
>FCL-AC03Z.Seq
----------AACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAA
AATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTC
TTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGATAAATA
CACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCAAAGAT
CACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACTTTAAC
CAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTT
TTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCA
AATCGCAAAGAAACCTTATTATCCAATATTTTTATTATCAGGTTTTAGTGGTTTTGATGG
TTCTTTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTAATAATAAACAAAAA
AGGTTTTTTTTTTTGTTCGAATAAACTTATAAAATATAAT
Length of 3' end seq. 570
Connected seq. ID FCL-AC03P
Connected seq. 
>FCL-AC03P.Seq
AATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTTATTAGTCATTATAAAAT
TGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTTTATTGAT
TAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTGGGCATTC
TTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAAGAAGAGA
TCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACGACCTTGA
TGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGAGTGAAGA
TGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTGTATGTTT
GCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAAGAGGTTCACG
TAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAATTAAAT--
--------AACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAA
TTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTT
CCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACA
CTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCAAAGATCA
CCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCA
AAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTT
TCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAA
TCGCAAAGAAACCTTATTATCCAATATTTTTATTATCAGGTTTTAGTGGTTTTGATGGTT
CTTTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTAATAATAAACAAAAAAG
GTTTTTTTTTTTGTTCGAATAAACTTATAAAATATAAT
Length of connected seq. 1108
Full length Seq ID -
Full length Seq. -
Length of full length seq. -