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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AB15
Library FCL
(Link to library)
Clone ID FCL-AB15
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15231-1
Original site URL
Representative seq. ID FCL-AB15E
(Link to Original site)
Representative DNA sequence 
>FCL-AB15 (FCL-AB15Q) /CSM/FCL/FCL-AB/FCL-AB15Q.Seq.d/
AAAATTTACAACATCCCATTTTTTTTATTTTTTTTTTTTATTGATTTTCATTCGTAATTA
AGTCAGTTTGTCTGATAGTGAAATATTATAAAAATAATTATTTAATAATAATAGTAAAAA
AAAAAAAAAAAGAAAAAAAAACATTTCTGTACCAAAAAAAAAAAAAAAAAAAAATCAAAC
ATTTATCATTCATCAGTAATACCACATACACACACGCTTCCCACCACACACAACACACAT
ATATACGAATCAAAATGTCATCAAATATGCAAGCTATGAAACAAATGAGACCAGCATTGG
TTTCACTCACACAACAACAAGCACGTAGAAGATGTTTCAAACTCTACAGAAATTGCATTA
GATCAATTCCACATTTAATTCAACATTACAATCTTTCTTATAATATGTCAGAAATGAGAA
ATAGATTTAGAAGCAACTTTGTTGAATTTGAAGAAGTTACTGAAAAGAATCAATTAGATA
GATTATCATTCATTGGTGAAACTGAACTTTTCGATGCAATGTCATTATTAAAAACTAGAA
GTCACGTTGTAAATTATTTCGATACTCAACCAGTTAATGCCAAAACAATCAGTGAATCTG
AAAAATTATTAAATAATTTCTTTGAATAAATAATCAAAATAATAAATAATAATAATAATA
TCAAAATATAAAATATGCAACCCATCTAATTGTTGGTCATCCAAATCAATTAAACAAAAA
AATAAAATGAAAAAAAAAAATAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAAA
TAAAAATAAAATAATGAAAAAACAAATAAATTAATTCTCAAAGATATTGATCGTATTTAA
A
sequence update 1996.12.25
Translated Amino Acid sequence 
nlqhpiffifffy*FSFVIKSVCLIVKYYKNNYLIIIVKKKKKEKKTFLYQKKKKKKIKH
LSFISNTTYTHASHHTQHTYIRIKMSSNMQAMKQMRPALVSLTQQQARRRCFKLYRNCIR
SIPHLIQHYNLSYNMSEMRNRFRSNFVEFEEVTEKNQLDRLSFIGETELFDAMSLLKTRS
HVVNYFDTQPVNAKTISESEKLLNNFFE*iikiinnnnniki*nmqpi*llviqin*tkk
*nekkk*kkknkik*nkikikik**knk*insqry*syl
Translated Amino Acid sequence (All Frames) 
Frame A:
kiynipfflffffidfhs*lsqfv***niikiii*****kkkkkkkkhfctkkkkkkksn
iyhssviphthtlptthnthiyeskchqickl*nk*dqhwfhshnnkhvedvsnsteial
dqfhi*fnitifliicqk*eidleatllnlkkllkrin*idyhslvklnfsmqchy*kle
vtl*iisilnqlmpkqsvnlkny*iislnk*sk**iiiiiskykicnpsncwssksikqk
nkmkkknkkkkik*nkik*k*k*nnektnklilkdidri*


Frame B:
kfttshffyfffllifirn*vslsdseil*k*lfnnnskkkkkrkknisvpkkkkkknqt
fiihq*yhihtrfpphtthiytnqnvikyasyetnetsigfthtttst*kmfqtlqklh*
instfnstlqsfl*yvrnek*i*kqlc*i*rsy*kesir*iiihw*n*tfrcnviikn*k
srcklfrysts*cqnnq*i*kiik*fl*innqnnk****yqnikyathlivghpnqlnkk
ik*kkkikkkk*nkik*nknknkimkkqin*fskilivfk


Frame C:
nlqhpiffifffy*FSFVIKSVCLIVKYYKNNYLIIIVKKKKKEKKTFLYQKKKKKKIKH
LSFISNTTYTHASHHTQHTYIRIKMSSNMQAMKQMRPALVSLTQQQARRRCFKLYRNCIR
SIPHLIQHYNLSYNMSEMRNRFRSNFVEFEEVTEKNQLDRLSFIGETELFDAMSLLKTRS
HVVNYFDTQPVNAKTISESEKLLNNFFE*iikiinnnnniki*nmqpi*llviqin*tkk
*nekkk*kkknkik*nkikikik**knk*insqry*syl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AB15 (FCL-AB15Q) /CSM/FCL/FCL-AB/FCL-AB15Q.Seq.d/                 702   0.0
VSG337 (VSG337Q) /CSM/VS/VSG3-B/VSG337Q.Seq.d/                        694   0.0
SSB747 (SSB747Q) /CSM/SS/SSB7-B/SSB747Q.Seq.d/                        694   0.0
SSI828 (SSI828Q) /CSM/SS/SSI8-B/SSI828Q.Seq.d/                        654   0.0
SSM481 (SSM481Q) /CSM/SS/SSM4-D/SSM481Q.Seq.d/                         48   2e-04
VHN835 (VHN835Q) /CSM/VH/VHN8-B/VHN835Q.Seq.d/                         40   0.053
SSG691 (SSG691Q) /CSM/SS/SSG6-D/SSG691Q.Seq.d/                         40   0.053
SHD206 (SHD206Q) /CSM/SH/SHD2-A/SHD206Q.Seq.d/                         38   0.21
SHD179 (SHD179Q) /CSM/SH/SHD1-D/SHD179Q.Seq.d/                         38   0.21
SFJ808 (SFJ808Q) /CSM/SF/SFJ8-A/SFJ808Q.Seq.d/                         38   0.21
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   6e-04  14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.002  14
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    34   0.002  12
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    32   0.008  7
AC130653|AC130653.20 Medicago truncatula clone mth1-13b3, WORKING DRAFT SEQUENCE, 5 ordered pieces.    34   0.018  7
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.023  12
BX248124|BX248124.7 Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12.    38   0.026  8
AL772274|AL772274.8 Zebrafish DNA sequence from clone CH211-196D14 in linkage group 11  Contains five CpG islands.    40   0.026  5
AL928999|AL928999.4 Zebrafish DNA sequence from clone CH211-227C6.    50   0.050  1
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    32   0.057  12
dna update 2003.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54F42) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s...   248   2e-64
AE013599_1242(AE013599|pid:none) Drosophila melanogaster chromos...    66   2e-09
AY342351_1(AY342351|pid:none) Ixodes ricinus NADH-ubiquinone oxi...    62   2e-08
AY279522_1(AY279522|pid:none) Branchiostoma belcheri tsingtaunes...    59   2e-07
EU086486_1(EU086486|pid:none) Trimastix pyriformis B14 subunit o...    59   3e-07
DQ215743_1(DQ215743|pid:none) Taeniopygia guttata clone 0065P000...    57   1e-06
(P56556) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s...    51   5e-05
BC135619_1(BC135619|pid:none) Xenopus tropicalis hypothetical pr...    51   5e-05
AL021878_2(AL021878|pid:none) Human DNA sequence from clone RP1-...    51   5e-05
AX888120_1(AX888120|pid:none) Sequence 3983 from Patent EP1033401.     51   5e-05
protein update 2009. 7. 3
PSORT 

 psg: 0.80  gvh: 0.47  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.18
 nuc: 0.58  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FCL-AB15 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FCL-AB15E
Full length Seq. 
>FCL-AB15E.Seq
AAAATTTACAACATCCCATTTTTTTTATTTTTTTTTTTTATTGATTTTCATTCGTAATTA
AGTCAGTTTGTCTGATAGTGAAATATTATAAAAATAATTATTTAATAATAATAGTAAAAA
AAAAAAAAAAAGAAAAAAAAACATTTCTGTACCAAAAAAAAAAAAAAAAAAAAATCAAAC
ATTTATCATTCATCAGTAATACCACATACACACACGCTTCCCACCACACACAACACACAT
ATATACGAATCAAAATGTCATCAAATATGCAAGCTATGAAACAAATGAGACCAGCATTGG
TTTCACTCACACAACAACAAGCACGTAGAAGATGTTTCAAACTCTACAGAAATTGCATTA
GATCAATTCCACATTTAATTCAACATTACAATCTTTCTTATAATATGTCAGAAATGAGAA
ATAGATTTAGAAGCAACTTTGTTGAATTTGAAGAAGTTACTGAAAAGAATCAATTAGATA
GATTATCATTCATTGGTGAAACTGAACTTTTCGATGCAATGTCATTATTAAAAACTAGAA
GTCACGTTGTAAATTATTTCGATACTCAACCAGTTAATGCCAAAACAATCAGTGAATCTG
AAAAATTATTAAATAATTTCTTTGAATAAATAATCAAAATAATAAATAATAATAATAATA
TCAAAATATAAAATATGCAACCCATCTAATTGTTGGTCATCCAAATCAATTAAACAAAAA
AATAAAATGAAAAAAAAAAATAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAAA
TAAAAATAAAATAATGAAAAAACAAATAAATTAATTCTCAAAGATATTGATCGTATTTAA
A
Length of full length seq. 841