NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AB06
Library FCL
(Link to library)
Clone ID FCL-AB06
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15603-1
Original site URL
Representative seq. ID FCL-AB06P
(Link to Original site)
Representative DNA sequence 
>FCL-AB06 (FCL-AB06Q) /CSM/FCL/FCL-AB/FCL-AB06Q.Seq.d/
CAATTTTATCGGAACCATCAATTCATGCAGGTTCTGTATTTAGTATTAATTTAACCAAAT
CTAGACAACAAGAACATCAAAATCGTATTGGTGAAATGATTGATGCTCATCAAGAGAATA
TTTTAAAACTTGGTTATGCAATGAAAATGGAAAAGTTAAGACAAGAATTGGATCTACGTG
AGAAATTAACAAATTTAAAAGAGAAAACTATCGATTCAACCAACACTGATGATGTTAATG
CTGCAAATGGTGTTGCTGAATCTTCAAATTCTTCAACTATCGACGTTGAAGAGATTGTAA
AGAAAATGCTATTAATGAATTCAACACATCAACAACAACAACAAAACTTTTCCTTACCAT
CTTCAACTTCACCAACTTTAGTAAATGGTGAATCATCACCAAAAAGTGGTAGATCATCAA
ATACCACTAGTAGTAGTAGTGGTGGTGGTGGTGGTGGTGGTCGTAAAAGATCATCAACAA
TTGTTGAAGTTAAAGTTAAAGAAGTACCATCAAGTGCATTATTAAAGGAGGATGAAACAA
GTGGTTATTTGAAAAAGAAATCAGCATTTAAAGAGGAATGGAAACCAAGATGGTTTGTTT
TTAAGAAACCATACCTTTATTATTCACATAATCAAAAAGATACTCATAAATTAAAGAAAA
TCGATTTAACCAATAGTTCAGTTGCAATCACTCAXXXXXXXXXXAAATAATGTCAAAGAG
GTTAGAGCAGAGTATGCCAATGGTATGGCCTTCTCTAGAGAGTTCTCTCAGCATCATACA
GATAGTGGTAGCATCAGTGGTAAGTTCAATAGAAGATCCAAACAAATCTCTGCTGAAGAA
CAAATGGAAACCCTTAGAGAAAGTTCAATCGCTCATCAATCTCATAACGCCTTTTTGAAT
TCACAAATTCAACGTTTGGAGACTGAAATGAGAACTCAAGAAAAGGTTTACAGTGATACC
ATTCAAAGAATTAAAAAAGATCTTCAACAAAGAAATCAACAAAATATAGCTTTTATGAAA
CATCAAGTCGGTGATGAAATCGTTAAAAAGATGGAAGATGTTACAGCCTCTATGGAGATT
TTGAAAAAGAAATATTTCGTTAGTTTAGTTGTTGCTGCAAAACTTCAAAATGCAATGATG
GGTAATATTTGTAATGTTGATGCTTATGAATTATATGAACAATCTGTAGTTGAACATATT
TTAGATCAAGATCAATGGCCAAATTGGATAGCTCAAACAATTTCAACTCAAAATAAACAT
TTATAAATATATAATAA
sequence update 1996.12.25
Translated Amino Acid sequence 
ILSEPSIHAGSVFSINLTKSRQQEHQNRIGEMIDAHQENILKLGYAMKMEKLRQELDLRE
KLTNLKEKTIDSTNTDDVNAANGVAESSNSSTIDVEEIVKKMLLMNSTHQQQQQNFSLPS
STSPTLVNGESSPKSGRSSNTTSSSSGGGGGGGRKRSSTIVEVKVKEVPSSALLKEDETS
GYLKKKSAFKEEWKPRWFVFKKPYLYYSHNQKDTHKLKKIDLTNSSVAIT---

---NNVKEVRAEYANGMAFSREFSQHHTDSGSISGKFNRRSKQISAEEQMETLRESSIAH
QSHNAFLNSQIQRLETEMRTQEKVYSDTIQRIKKDLQQRNQQNIAFMKHQVGDEIVKKME
DVTASMEILKKKYFVSLVVAAKLQNAMMGNICNVDAYELYEQSVVEHILDQDQWPNWIAQ
TISTQNKHL*iyn
Translated Amino Acid sequence (All Frames) 
Frame A:
qfyrnhqfmqvlylvli*pnldnknikivlvk*lmlikrif*nlvmq*kwks*dknwiyv
rn*qi*krklsiqptlmmlmlqmvllnlqilqlstlkrl*rkcy**iqhinnnnktfpyh
lqlhql**mvnhhqkvvdhqiplvvvvvvvvvvvvkdhqqllklklkkyhqvhy*rrmkq
vvi*krnqhlkrngnqdglflrnhtfiihiikkilin*rksi*pivqlqsl---

---k*cqrg*srvcqwygll*rvlsasyr*w*hqw*vq*kiqtnlc*rtngnp*rkfnrs
sis*rlfeftnstfgd*nensrkglq*yhskn*krsstkkstkysfyetssr**nr*kdg
rcyslygdfekeifr*fscccktskcndg*yl*c*cl*ii*tics*tyfrsrsmakldss
nnfnsk*tfini**

Frame B:
nfigtinscrfci*y*fnqi*ttrtsksyw*nd*cssreyfktwlcnengkvktrigst*
einkfkrenyrfnqh**c*cckwcc*ifkffnyrr*rdckenainefntsttttklflti
fnftnfskw*iitkkw*iikyh****wwwwwwws*kiinnc*s*s*rstikciikgg*nk
wlfekeisi*rgmetkmvcf*etipllft*skrys*ikenrfnq*fscnhs---

---NNVKEVRAEYANGMAFSREFSQHHTDSGSISGKFNRRSKQISAEEQMETLRESSIAH
QSHNAFLNSQIQRLETEMRTQEKVYSDTIQRIKKDLQQRNQQNIAFMKHQVGDEIVKKME
DVTASMEILKKKYFVSLVVAAKLQNAMMGNICNVDAYELYEQSVVEHILDQDQWPNWIAQ
TISTQNKHL*iyn

Frame C:
ILSEPSIHAGSVFSINLTKSRQQEHQNRIGEMIDAHQENILKLGYAMKMEKLRQELDLRE
KLTNLKEKTIDSTNTDDVNAANGVAESSNSSTIDVEEIVKKMLLMNSTHQQQQQNFSLPS
STSPTLVNGESSPKSGRSSNTTSSSSGGGGGGGRKRSSTIVEVKVKEVPSSALLKEDETS
GYLKKKSAFKEEWKPRWFVFKKPYLYYSHNQKDTHKLKKIDLTNSSVAIT---

---imskrleqsmpmvwpslesslsiiqivvasvvssiedpnksllknkwkplekvqsli
nlitpf*ihkfnvwrlk*elkkrftvipfkelkkifnkeinki*ll*niksvmkslkrwk
mlqplwrf*krnislv*lllqnfkmq*wvifvmlmlmnymnnl*lnif*ikingqig*lk
qfqlkiniykyii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AB06 (FCL-AB06Q) /CSM/FCL/FCL-AB/FCL-AB06Q.Seq.d/                1558   0.0
SLH570 (SLH570Q) /CSM/SL/SLH5-C/SLH570Q.Seq.d/                       1132   0.0
VHG504 (VHG504Q) /CSM/VH/VHG5-A/VHG504Q.Seq.d/                       1124   0.0
VHC646 (VHC646Q) /CSM/VH/VHC6-B/VHC646Q.Seq.d/                       1124   0.0
CHI432 (CHI432Q) /CSM/CH/CHI4-B/CHI432Q.Seq.d/                       1124   0.0
AFH757 (AFH757Q) /CSM/AF/AFH7-C/AFH757Q.Seq.d/                       1112   0.0
CHR584 (CHR584Q) /CSM/CH/CHR5-D/CHR584Q.Seq.d/                       1108   0.0
CHM775 (CHM775Q) /CSM/CH/CHM7-D/CHM775Q.Seq.d/                       1108   0.0
CFI685 (CFI685Q) /CSM/CF/CFI6-D/CFI685Q.Seq.d/                       1096   0.0
CHQ896 (CHQ896Q) /CSM/CH/CHQ8-D/CHQ896Q.Seq.d/                       1094   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF245277|AF245277.1 Dictyostelium discoideum kinesin Unc104/KIF1a homolog (Unc104) mRNA, complete cds.  1128  0.0  3
AC105439|AC105439.2 Felis catus clone RP86-515N8, WORKING DRAFT SEQUENCE, 3 ordered pieces.    36  0.002  6
AP003117|AP003117.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1958F4.    46  0.008  4
AL139135|AL139135.15 Human DNA sequence from clone RP11-463J7 on chromosome 1q31.1-31.3.    44  0.009  7
AC130650|AC130650.2 Homo sapiens chromosome 16 clone CTA-276F8, complete sequence.    48  0.034  2
X99669|X99669.1 Dictyostelium discoideum mRNA for dynamin homologue.    34  0.057  4
AC143327|AC143327.1 Homo sapiens chromosome 16 clone RP11-904P17, WORKING DRAFT SEQUENCE, 46 unordered pieces.    36  0.062  10
AC113246|AC113246.4 Mus musculus clone RP23-315E20, WORKING DRAFT SEQUENCE, 8 unordered pieces.    36  0.088  6
AC068074|AC068074.2 Homo sapiens chromosome 3 clone RP11-551L4 map 3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36  0.093  7
U05069|U05069.1 Simian immunodeficiency virus SIVRhE543 clone 5-4 envelope glycoprotein (env) gene, V1 region, partial cds.    38  0.097  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9NGQ2) RecName: Full=Kinesin-related protein 1; AltName: Full=...   382   e-104
AC116960_51(AC116960|pid:none) Dictyostelium discoideum chromoso...    76   3e-12
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    50   2e-04
BC068913_1(BC068913|pid:none) Xenopus laevis hypothetical protei...    42   0.058
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating...    40   0.13
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName...    40   0.13
AK091196_1(AK091196|pid:none) Homo sapiens cDNA FLJ33877 fis, cl...    40   0.13
BC093150_1(BC093150|pid:none) Danio rerio zgc:111998, mRNA (cDNA...    40   0.13
AK130576_1(AK130576|pid:none) Homo sapiens cDNA FLJ27066 fis, cl...    40   0.13
BC089655_1(BC089655|pid:none) Xenopus tropicalis dual adaptor of...    40   0.17
protein update 2009. 4.14
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for FCL-AB06 is nuc
5' end seq. ID FCL-AB06F
5' end seq. 
>FCL-AB06F.Seq
CAATTTTATCGGAACCATCAATTCATGCAGGTTCTGTATTTAGTATTAATTTAACCAAAT
CTAGACAACAAGAACATCAAAATCGTATTGGTGAAATGATTGATGCTCATCAAGAGAATA
TTTTAAAACTTGGTTATGCAATGAAAATGGAAAAGTTAAGACAAGAATTGGATCTACGTG
AGAAATTAACAAATTTAAAAGAGAAAACTATCGATTCAACCAACACTGATGATGTTAATG
CTGCAAATGGTGTTGCTGAATCTTCAAATTCTTCAACTATCGACGTTGAAGAGATTGTAA
AGAAAATGCTATTAATGAATTCAACACATCAACAACAACAACAAAACTTTTCCTTACCAT
CTTCAACTTCACCAACTTTAGTAAATGGTGAATCATCACCAAAAAGTGGTAGATCATCAA
ATACCACTAGTAGTAGTAGTGGTGGTGGTGGTGGTGGTGGTCGTAAAAGATCATCAACAA
TTGTTGAAGTTAAAGTTAAAGAAGTACCATCAAGTGCATTATTAAAGGAGGATGAAACAA
GTGGTTATTTGAAAAAGAAATCAGCATTTAAAGAGGAATGGAAACCAAGATGGTTTGTTT
TTAAGAAACCATACCTTTATTATTCACATAATCAAAAAGATACTCATAAATTAAAGAAAA
TCGATTTAACCAATAGTTCAGTTGCAATCACTCA----------
Length of 5' end seq. 694
3' end seq. ID FCL-AB06Z
3' end seq. 
>FCL-AB06Z.Seq
----------AAATAATGTCAAAGAGGTTAGAGCAGAGTATGCCAATGGTATGGCCTTCT
CTAGAGAGTTCTCTCAGCATCATACAGATAGTGGTAGCATCAGTGGTAAGTTCAATAGAA
GATCCAAACAAATCTCTGCTGAAGAACAAATGGAAACCCTTAGAGAAAGTTCAATCGCTC
ATCAATCTCATAACGCCTTTTTGAATTCACAAATTCAACGTTTGGAGACTGAAATGAGAA
CTCAAGAAAAGGTTTACAGTGATACCATTCAAAGAATTAAAAAAGATCTTCAACAAAGAA
ATCAACAAAATATAGCTTTTATGAAACATCAAGTCGGTGATGAAATCGTTAAAAAGATGG
AAGATGTTACAGCCTCTATGGAGATTTTGAAAAAGAAATATTTCGTTAGTTTAGTTGTTG
CTGCAAAACTTCAAAATGCAATGATGGGTAATATTTGTAATGTTGATGCTTATGAATTAT
ATGAACAATCTGTAGTTGAACATATTTTAGATCAAGATCAATGGCCAAATTGGATAGCTC
AAACAATTTCAACTCAAAATAAACATTTATAAATATATAATAA
Length of 3' end seq. 573
Connected seq. ID FCL-AB06P
Connected seq. 
>FCL-AB06P.Seq
CAATTTTATCGGAACCATCAATTCATGCAGGTTCTGTATTTAGTATTAATTTAACCAAAT
CTAGACAACAAGAACATCAAAATCGTATTGGTGAAATGATTGATGCTCATCAAGAGAATA
TTTTAAAACTTGGTTATGCAATGAAAATGGAAAAGTTAAGACAAGAATTGGATCTACGTG
AGAAATTAACAAATTTAAAAGAGAAAACTATCGATTCAACCAACACTGATGATGTTAATG
CTGCAAATGGTGTTGCTGAATCTTCAAATTCTTCAACTATCGACGTTGAAGAGATTGTAA
AGAAAATGCTATTAATGAATTCAACACATCAACAACAACAACAAAACTTTTCCTTACCAT
CTTCAACTTCACCAACTTTAGTAAATGGTGAATCATCACCAAAAAGTGGTAGATCATCAA
ATACCACTAGTAGTAGTAGTGGTGGTGGTGGTGGTGGTGGTCGTAAAAGATCATCAACAA
TTGTTGAAGTTAAAGTTAAAGAAGTACCATCAAGTGCATTATTAAAGGAGGATGAAACAA
GTGGTTATTTGAAAAAGAAATCAGCATTTAAAGAGGAATGGAAACCAAGATGGTTTGTTT
TTAAGAAACCATACCTTTATTATTCACATAATCAAAAAGATACTCATAAATTAAAGAAAA
TCGATTTAACCAATAGTTCAGTTGCAATCACTCA----------AAATAATGTCAAAGAG
GTTAGAGCAGAGTATGCCAATGGTATGGCCTTCTCTAGAGAGTTCTCTCAGCATCATACA
GATAGTGGTAGCATCAGTGGTAAGTTCAATAGAAGATCCAAACAAATCTCTGCTGAAGAA
CAAATGGAAACCCTTAGAGAAAGTTCAATCGCTCATCAATCTCATAACGCCTTTTTGAAT
TCACAAATTCAACGTTTGGAGACTGAAATGAGAACTCAAGAAAAGGTTTACAGTGATACC
ATTCAAAGAATTAAAAAAGATCTTCAACAAAGAAATCAACAAAATATAGCTTTTATGAAA
CATCAAGTCGGTGATGAAATCGTTAAAAAGATGGAAGATGTTACAGCCTCTATGGAGATT
TTGAAAAAGAAATATTTCGTTAGTTTAGTTGTTGCTGCAAAACTTCAAAATGCAATGATG
GGTAATATTTGTAATGTTGATGCTTATGAATTATATGAACAATCTGTAGTTGAACATATT
TTAGATCAAGATCAATGGCCAAATTGGATAGCTCAAACAATTTCAACTCAAAATAAACAT
TTATAAATATATAATAA
Length of connected seq. 1267
Full length Seq ID -
Full length Seq. -
Length of full length seq. -