FCL-AA24
Library FCL
(Link to library)
Clone ID FCL-AA24
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16467-1
Original site URL
Representative seq. ID FCL-AA24E
(Link to Original site)
Representative DNA sequence
>FCL-AA24 (FCL-AA24Q) /CSM/FCL/FCL-AA/FCL-AA24Q.Seq.d/
CTAGAAATTTCTAAACAATTATTTATTTGAAGAGGTTTTTTAAAAAAAGAAAAAAATCAG
AGCATCCAAATAATAACCGCAGTAAGGGGGGGATGGTTGTTAATATTATTGGTACAAATT
CATATGAGGAAATGAATTAATTGCTTAAGCAGTTGGTTGGAAAGCAATGGTATCTTCACC
ATCGATGATGTAACCGAAAGAGAAGGATTGACCTGGTTGGATGACTGGGTACCATTGGAG
TGACCAGAGGTTAGTGGCTTCATTGACTGAGAGACCCCAGATTGAGTTTGGACGATTTGG
AGAAGAGGTGAAAGTTGGGTTGGTAACAGTGACTGAACCAGTGTTGGTAATTGTACCACC
GAATTGAGAGACAGTTTTACCGTTTTCAAACCATGAGGAGTAACGAGTTTGATCAATCTT
TAATGGTGAAGTAGTGTTGGTACAGACACATTGTGGTTTAATGTAATAGATTGAAGTTGG
TTTGCTACAGTATGAACCGAACCAGGCGTCAGCTTCAGTACGTAAGACACCACCGATAAC
TCTTGGTGGGCTAGCTCTTAAACCATAGTAACGACCAAAGATGTATGAGGAATCCATTGG
GATGTTTGACATACAGATTTTGCAAAGTAAATCACTGTTGAAGGTACCCCAGACAATGGT
TTTGAAGTCAGCCCACAAAAGAGCAGCTGAGCACATGGCGCATGGCTCTATAGGAGTTTG
TTAGTTGTTCAATTGATTGATCACATGATCATTCATTATTATTTTTTTAAAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
*kflnnylfeevf*kkkkirask**pq*ggdgc*yywykfi*gnelia*avgwkamvssp
smm*pkekd*PGWMTGYHWSDQRLVASLTERPQIEFGRFGEEVKVGLVTVTEPVLVIVPP
N*etvlpfsnhee*rv*sifngevvlvqthcglm**ievgllqyepnqasasvrktppit
lgglalkp**rpkmyeesigmfdiqilqsksllkvpqtmvlksahkraaehmahgsigvc
*lfn*lit*sfiiiflkkk


Translated Amino Acid sequence (All Frames)
Frame A:
leiskqlfi*rgflkkeknqsiqiitavrggwllillvqihmrk*inclsswlesngift
iddvteregltwlddwvple*pevsgfid*etpd*vwtiwrrgeswvgnsd*tsvgnctt
elrdsftvfkp*gvtslinl*w*ssvgtdtlwfnvid*swfatv*tepgvsfst*dttdn
swwass*tivttkdv*gihwdv*htdfak*itvegtpdngfevspqkss*ahgawlyrsl
lvvqlidhmiihyyffkkk


Frame B:
*kflnnylfeevf*kkkkirask**pq*ggdgc*yywykfi*gnelia*avgwkamvssp
smm*pkekd*PGWMTGYHWSDQRLVASLTERPQIEFGRFGEEVKVGLVTVTEPVLVIVPP
N*etvlpfsnhee*rv*sifngevvlvqthcglm**ievgllqyepnqasasvrktppit
lgglalkp**rpkmyeesigmfdiqilqsksllkvpqtmvlksahkraaehmahgsigvc
*lfn*lit*sfiiiflkkk


Frame C:
rnf*tiiylkrffkkrkksehpnnnrskggmvvniigtnsyeemn*llkqlvgkqwylhh
r*cnrkrridlvg*lgtigvtrg*wlh*lrdprlslddlekr*klgw*q*lnqcw*lyhr
ierqfyrfqtmrsnefdqslmvk*cwyrhivv*cnrlklvcysmnrtrrqlqyvrhhr*l
lvg*llnhsndqrcmrnplgcltyrfckvnhc*ryprqwf*sqptkeqlstwrmal*efv
scsid*shdhsllff*kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA24 (FCL-AA24Q) /CSM/FCL/FCL-AA/FCL-AA24Q.Seq.d/ 1370 0.0
VFN240 (VFN240Q) /CSM/VF/VFN2-B/VFN240Q.Seq.d/ 1239 0.0
VFL528 (VFL528Q) /CSM/VF/VFL5-B/VFL528Q.Seq.d/ 1239 0.0
SSE733 (SSE733Q) /CSM/SS/SSE7-B/SSE733Q.Seq.d/ 1207 0.0
VFL767 (VFL767Q) /CSM/VF/VFL7-C/VFL767Q.Seq.d/ 1179 0.0
SFC348 (SFC348Q) /CSM/SF/SFC3-B/SFC348Q.Seq.d/ 1168 0.0
VFJ667 (VFJ667Q) /CSM/VF/VFJ6-C/VFJ667Q.Seq.d/ 1162 0.0
SFC842 (SFC842Q) /CSM/SF/SFC8-B/SFC842Q.Seq.d/ 1162 0.0
SFG535 (SFG535Q) /CSM/SF/SFG5-B/SFG535Q.Seq.d/ 1146 0.0
SFJ672 (SFJ672Q) /CSM/SF/SFJ6-C/SFJ672Q.Seq.d/ 1136 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 1340 0.0 3
AC104468|AC104468.4 Homo sapiens chromosome 3 clone RP11-85M11, WORKING DRAFT SEQUENCE, 4 unordered pieces. 46 0.72 1
AC013458|AC013458.5 Homo sapiens clone RP11-85M11, complete sequence. 46 0.72 1
AQ592289|AQ592289.1 HS_5331_B2_D11_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=907 Col=22 Row=H, DNA sequence. 46 0.72 1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 30 1.0 13
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 32 1.8 8
AC134895|AC134895.3 Mus musculus chromosome UNK clone RP24-288D5, WORKING DRAFT SEQUENCE, 8 unordered pieces. 44 2.8 1
AC113586|AC113586.4 Mus musculus clone RP23-17D24, WORKING DRAFT SEQUENCE, 10 ordered pieces. 44 2.8 1
CG567840|CG567840.1 OST194419 Mus musculus 129Sv/Ev Mus musculus genomic clone OST194419, genomic survey sequence. 44 2.8 1
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 32 4.7 2
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso... 399 e-110
AC116032_1(AC116032|pid:none) Dictyostelium discoideum chromosom... 73 9e-12
CU633453_11(CU633453|pid:none) Podospora anserina genomic DNA ch... 45 0.003
CU633897_23(CU633897|pid:none) Podospora anserina genomic DNA ch... 44 0.006
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ... 44 0.008
AY710429_3(AY710429|pid:none) Cryptococcus gattii strain E566 MA... 42 0.017
AY710430_3(AY710430|pid:none) Cryptococcus gattii strain WM276 M... 42 0.022
EF591889_14(EF591889|pid:none) Uncultured planctomycete 13FN clo... 42 0.029
AF538680_1(AF538680|pid:none) Gossypium hirsutum endo-1,4-beta-g... 41 0.049
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel... 40 0.084
protein update 2009. 7. 3
PSORT

psg: 0.75 gvh: 0.30 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for FCL-AA24 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FCL-AA24E
Full length Seq.
>FCL-AA24E.Seq
CTAGAAATTTCTAAACAATTATTTATTTGAAGAGGTTTTTTAAAAAAAGAAAAAAATCAG
AGCATCCAAATAATAACCGCAGTAAGGGGGGGATGGTTGTTAATATTATTGGTACAAATT
CATATGAGGAAATGAATTAATTGCTTAAGCAGTTGGTTGGAAAGCAATGGTATCTTCACC
ATCGATGATGTAACCGAAAGAGAAGGATTGACCTGGTTGGATGACTGGGTACCATTGGAG
TGACCAGAGGTTAGTGGCTTCATTGACTGAGAGACCCCAGATTGAGTTTGGACGATTTGG
AGAAGAGGTGAAAGTTGGGTTGGTAACAGTGACTGAACCAGTGTTGGTAATTGTACCACC
GAATTGAGAGACAGTTTTACCGTTTTCAAACCATGAGGAGTAACGAGTTTGATCAATCTT
TAATGGTGAAGTAGTGTTGGTACAGACACATTGTGGTTTAATGTAATAGATTGAAGTTGG
TTTGCTACAGTATGAACCGAACCAGGCGTCAGCTTCAGTACGTAAGACACCACCGATAAC
TCTTGGTGGGCTAGCTCTTAAACCATAGTAACGACCAAAGATGTATGAGGAATCCATTGG
GATGTTTGACATACAGATTTTGCAAAGTAAATCACTGTTGAAGGTACCCCAGACAATGGT
TTTGAAGTCAGCCCACAAAAGAGCAGCTGAGCACATGGCGCATGGCTCTATAGGAGTTTG
TTAGTTGTTCAATTGATTGATCACATGATCATTCATTATTATTTTTTTAAAAAAAAAAA
Length of full length seq. 779