FCL-AA23
Library FCL
(Link to library)
Clone ID FCL-AA23
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID FCL-AA23E
(Link to Original site)
Representative DNA sequence
>FCL-AA23 (FCL-AA23Q) /CSM/FCL/FCL-AA/FCL-AA23Q.Seq.d/
ATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATT
CTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTG
TTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACA
AAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGA
GAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCA
AAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTT
TCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACTCTTTGTTTACC
CATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAAT
TCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTAT
ACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTG
GTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGG
CTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCG
ATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCA
CTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTG
CTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAA
TCCAAAAACTTATGGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAA
AAAAACAGGATTTTAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAA
AAAAAAAATACTATAAAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
NYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAADKQYK
GIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFF
IGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRDGLIGLY
RGFGVSVGGIFVYRAAFFGGYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVSYPFD
TVRRRMMMQAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVIYDEI
QKLMGFEGGVGSE*enpqekkqdfn*kkkht*nik*nflkkkyykkk


Translated Amino Acid sequence (All Frames)
Frame A:
iti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllqlklllinnt
kvssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllkktqpnf
slviyylvvllvqphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqstretv*svy
tvvlvylsevslstellslvvtillkefy*vkttrklhsglhgvshklslpslv*saths
ilfvee**ckpvvliffiqalgivg*rlppvkvqlpsskvlyqmpsevqvvl*f*lfmmk
sknlwvlkvvlvlnkkirkkknriltkkknihei*nktf*kkntikkk


Frame B:
*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfnsncc**tiq
ryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*rkpnqif
hw*fiiwwccwcnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlqerrfnrfi
pwfwcicrrylclqscflwwlryc*rnfir*kqqesfilgfmgyrtschyhrwcsqlpir
ycs*knddasrsc*yslfkhlgllgkdchp*rsncllqrcfikchqrfrwcfsfsyl**n
pktygf*rwcwf*irksarkktgf*lkkktymkykiklfkkkil*kkk


Frame C:
NYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAADKQYK
GIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFF
IGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRDGLIGLY
RGFGVSVGGIFVYRAAFFGGYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVSYPFD
TVRRRMMMQAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVIYDEI
QKLMGFEGGVGSE*enpqekkqdfn*kkkht*nik*nflkkkyykkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA23 (FCL-AA23Q) /CSM/FCL/FCL-AA/FCL-AA23Q.Seq.d/ 1953 0.0
SLH708 (SLH708Q) /CSM/SL/SLH7-A/SLH708Q.Seq.d/ 1931 0.0
VFL424 (VFL424Q) /CSM/VF/VFL4-A/VFL424Q.Seq.d/ 1919 0.0
VHC420 (VHC420Q) /CSM/VH/VHC4-A/VHC420Q.Seq.d/ 1885 0.0
VFK227 (VFK227Q) /CSM/VF/VFK2-B/VFK227Q.Seq.d/ 1857 0.0
VFB604 (VFB604Q) /CSM/VF/VFB6-A/VFB604Q.Seq.d/ 1857 0.0
VSJ705 (VSJ705Q) /CSM/VS/VSJ7-A/VSJ705Q.Seq.d/ 1806 0.0
VFJ879 (VFJ879Q) /CSM/VF/VFJ8-D/VFJ879Q.Seq.d/ 1796 0.0
VFM349 (VFM349Q) /CSM/VF/VFM3-C/VFM349Q.Seq.d/ 1786 0.0
VFL711 (VFL711Q) /CSM/VF/VFL7-A/VFL711Q.Seq.d/ 1782 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds. 1937 0.0 1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds. 1433 0.0 2
AF480922|AF480922.1 Nyctotherus ovalis from Blaberus sp. var. Duesseldorf ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product. 70 1e-27 4
AF480920|AF480920.1 Nyctotherus ovalis from Periplaneta americana var. Bayer ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product. 78 1e-27 4
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-27 4
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-27 4
BI323418|BI323418.1 kt71a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 4e-27 4
BG894099|BG894099.1 kt18c03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 4e-27 4
BG893792|BG893792.1 kt15d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 4e-27 4
BI397208|BI397208.1 kt58d01.y3 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 4e-27 4
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr... 614 e-174
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03... 425 e-117
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t... 400 e-110
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran... 397 e-109
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ... 396 e-109
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit... 395 e-108
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD... 395 e-108
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden... 394 e-108
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra... 394 e-108
BC067329_1(BC067329|pid:none) Danio rerio solute carrier family ... 394 e-108
protein update 2009. 7. 3
PSORT

psg: 0.62 gvh: 0.58 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for FCL-AA23 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FCL-AA23E
Full length Seq.
>FCL-AA23E.Seq
ATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATT
CTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTG
TTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACA
AAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGA
GAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCA
AAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTT
TCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACTCTTTGTTTACC
CATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAAT
TCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTAT
ACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTG
GTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGG
CTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCG
ATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCA
CTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTG
CTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAA
TCCAAAAACTTATGGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAA
AAAAACAGGATTTTAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAA
AAAAAAAATACTATAAAAAAAAAAA
Length of full length seq. 1045