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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA22
Library FCL
(Link to library)
Clone ID FCL-AA22
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15119-1
Original site URL
Representative seq. ID FCL-AA22E
(Link to Original site)
Representative DNA sequence 
>FCL-AA22 (FCL-AA22Q) /CSM/FCL/FCL-AA/FCL-AA22Q.Seq.d/
AAAATGAGCAAAATCTCAAGCGACCAAGTTAGATCAATCGTCTCCCAACTTTTCAAAGAA
GCACAAGAATCCAAAAGAGGTTTCTTAGAAACTGTTGAACTCCAAATCAACTTAAAGAAT
TATGATACCAAGAAAGATAAGCGTTTCTCTGGTCAAATCAAAATCGGTACCGTCACCAAA
CCAAAATTAAGCGTTTGTGTCTTTGCTGATCAACAACATTGTGATGAAGCCACTAAAATC
GGTGCTGAATTCATGGATATTGAAGCCTTAAAGAAAATCGGTCCAAAGAACAAGAAAGCC
ATCAAGAAGCTCTCAAAGAAATACGATGCTTTCTTAGCCTCTGAATCTATCTTACGTCAA
GTTCCAAAACTCTTAGGTCCAGGTCTCAACAAGGTCGGTAAATTCCCAACCCTCCTTACT
CACTCTGAAGATATGGCCTCAAAGATCAATGATGTCAAATCAACCGTCAAATTCCAACTT
AAGAAAGTTTTATGTTTAGCCGTCGCTGTCGGTCACATCGAATTAACTGAAAGAGAAGTT
GCCACCAACATCATTCAATCAATTAATTTCTTAGTCTCCCTCTTAAAGAAAGGATGGCAA
AATATTAAGACTTTATACGTCAAAACCTCTATGGGTCCATCACACCGTGTCTACTAAGGA
TACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGAGTGTTTGATACTGTCATTTT
TGACTTTATTGACATTTTGTTTCCCATCTATTGGAAGCTAAAAAATTAACTTATAATAAA
AAAATACCCTTTTTTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence 
KMSKISSDQVRSIVSQLFKEAQESKRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTK
PKLSVCVFADQQHCDEATKIGAEFMDIEALKKIGPKNKKAIKKLSKKYDAFLASESILRQ
VPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREV
ATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY*gycwflihqywvnrsv*ychf
*ly*hfvshlleakkltynkkipffnikkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KMSKISSDQVRSIVSQLFKEAQESKRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTK
PKLSVCVFADQQHCDEATKIGAEFMDIEALKKIGPKNKKAIKKLSKKYDAFLASESILRQ
VPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREV
ATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY*gycwflihqywvnrsv*ychf
*ly*hfvshlleakkltynkkipffnikkkkkkkkkkkkk


Frame B:
k*aksqatkldqsspnfskkhknpkevs*kllnskst*rimiprkisvslvksksvpspn
qn*afvsllinnivmkplksvlnswilkp*rksvqrtrkpsrssqrntmls*plnlsyvk
fqns*vqvstrsvnsqpslltlkiwpqrsmmsnqpsnsnlrkfyv*pslsvtsn*lkekl
pptsfnqlis*sps*rkdgkilrlytskplwvhhtvstkdtvgf*ytntgligvfdtvif
dfidilfpiywklkn*liikkypfli*kkkkkkkkkkkk


Frame C:
neqnlkrps*inrlptfqrstriqkrflrnc*tpnqlkel*yqer*aflwsnqnryrhqt
kikrlclc*sttl**sh*nrc*ihgy*slkenrskeqeshqealkeircflsl*iyltss
sktlrsrsqqgr*ipnppysl*ryglkdq*cqinrqipt*esfmfsrrcrshrin*krsc
hqhhsin*flslplkermaky*dfirqnlygsitpcllrillvsntpilg**eclilsfl
tlltfcfpsigs*kinl**kntlf*ykkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA22 (FCL-AA22Q) /CSM/FCL/FCL-AA/FCL-AA22Q.Seq.d/                1544   0.0
FC-140 (FC-140Q) /CSM/CG/CG-FC/FC-140Q.Seq.d/                        1530   0.0
VFL861 (VFL861Q) /CSM/VF/VFL8-C/VFL861Q.Seq.d/                       1437   0.0
FC-BQ02 (FC-BQ02Q) /CSM/FC/FC-BQ/FC-BQ02Q.Seq.d/                     1336   0.0
FC-AH14 (FC-AH14Q) /CSM/FC/FC-AH/FC-AH14Q.Seq.d/                     1298   0.0
FC-IC1388 (FC-IC1388Q) /CSM/FC-IC/FC-IC1388Q.Seq.d/                  1211   0.0
FC-IC0845 (FC-IC0845Q) /CSM/FC-IC/FC-IC0845Q.Seq.d/                  1207   0.0
FC-IC1111 (FC-IC1111Q) /CSM/FC-IC/FC-IC1111Q.Seq.d/                  1195   0.0
VSD564 (VSD564Q) /CSM/VS/VSD5-C/VSD564Q.Seq.d/                        959   0.0
VSC391 (VSC391Q) /CSM/VS/VSC3-D/VSC391Q.Seq.d/                        918   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.  1528   0.0    2
AL436699|AL436699.1 T7 end of clone BC0AA004G07 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    60   8e-11  3
AY065077|AY065077.1 Arabidopsis thaliana putative ribosomal protein L10 (At1g08360; T27G7.6) mRNA, complete cds.    62   4e-09  2
AY114542|AY114542.1 Arabidopsis thaliana putative ribosomal protein L10 (At1g08360) mRNA, complete cds.    62   4e-09  2
AV782333|AV782333.1 Arabidopsis thaliana cDNA clone:RAFL04-16-H06, 3'-end.    62   4e-09  2
AV821792|AV821792.1 Arabidopsis thaliana cDNA clone:RAFL04-16-H06, 5'-end.    62   4e-09  2
AV440782|AV440782.1 Arabidopsis thaliana cDNA clone:APZ09a06_f, 3' end.    62   4e-09  2
CB261264|CB261264.1 13-E9409-012-002-J14-t7r MPIZ-ADIS-012 Arabidopsis thaliana cDNA clone MPIZp769J142Q 5-PRIME, mRNA sequence.    62   4e-09  2
T42819|T42819.1 6082 Lambda-PRL2 Arabidopsis thaliana cDNA clone 116P9T7, mRNA sequence.    62   4e-09  2
AV549072|AV549072.1 Arabidopsis thaliana cDNA clone:RZ03a03R, 5' end.    62   4e-09  2
dna update 2003.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86L05) RecName: Full=60S ribosomal protein L10a;  &AC117075_90...   380   e-104
BC168113_1(BC168113|pid:none) Xenopus tropicalis cDNA clone IMAG...   249   6e-65
BC158335_1(BC158335|pid:none) Xenopus tropicalis hypothetical pr...   249   6e-65
(Q7ZYS8) RecName: Full=60S ribosomal protein L10a;  &BC041308_1(...   248   1e-64
CP000584_290(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   248   2e-64
(Q9VTP4) RecName: Full=60S ribosomal protein L10a-2;  &AE014296_...   246   5e-64
AY232031_1(AY232031|pid:none) Drosophila yakuba clone yak-ad_CG7...   246   9e-64
AM049020_1(AM049020|pid:none) Biphyllus lunatus mRNA for ribosom...   246   9e-64
(Q6PC69) RecName: Full=60S ribosomal protein L10a;  &AL929282_11...   245   1e-63
EU961318_1(EU961318|pid:none) Zea mays clone 234483 60S ribosoma...   245   2e-63
protein update 2009. 7. 3
PSORT 

 psg: 0.76  gvh: 0.26  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for FCL-AA22 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FCL-AA22E
Full length Seq. 
>FCL-AA22E.Seq
AAAATGAGCAAAATCTCAAGCGACCAAGTTAGATCAATCGTCTCCCAACTTTTCAAAGAA
GCACAAGAATCCAAAAGAGGTTTCTTAGAAACTGTTGAACTCCAAATCAACTTAAAGAAT
TATGATACCAAGAAAGATAAGCGTTTCTCTGGTCAAATCAAAATCGGTACCGTCACCAAA
CCAAAATTAAGCGTTTGTGTCTTTGCTGATCAACAACATTGTGATGAAGCCACTAAAATC
GGTGCTGAATTCATGGATATTGAAGCCTTAAAGAAAATCGGTCCAAAGAACAAGAAAGCC
ATCAAGAAGCTCTCAAAGAAATACGATGCTTTCTTAGCCTCTGAATCTATCTTACGTCAA
GTTCCAAAACTCTTAGGTCCAGGTCTCAACAAGGTCGGTAAATTCCCAACCCTCCTTACT
CACTCTGAAGATATGGCCTCAAAGATCAATGATGTCAAATCAACCGTCAAATTCCAACTT
AAGAAAGTTTTATGTTTAGCCGTCGCTGTCGGTCACATCGAATTAACTGAAAGAGAAGTT
GCCACCAACATCATTCAATCAATTAATTTCTTAGTCTCCCTCTTAAAGAAAGGATGGCAA
AATATTAAGACTTTATACGTCAAAACCTCTATGGGTCCATCACACCGTGTCTACTAAGGA
TACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGAGTGTTTGATACTGTCATTTT
TGACTTTATTGACATTTTGTTTCCCATCTATTGGAAGCTAAAAAATTAACTTATAATAAA
AAAATACCCTTTTTTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 840