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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA21
Library FCL
(Link to library)
Clone ID FCL-AA21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14936-1
Original site URL
Representative seq. ID FCL-AA21P
(Link to Original site)
Representative DNA sequence 
>FCL-AA21 (FCL-AA21Q) /CSM/FCL/FCL-AA/FCL-AA21Q.Seq.d/
ATCATAATCATATATTTTTAATAGATATTGATATATATATTTAAAAAAATAAAATAAAAT
AAAATAAAAAATGTCAACAGAGGAAACAAAAAAAGAGCAAGCACTTCAAAATTATAGAGA
TCGTTTAATAGAACATAAAAATGCAGAACTTAGATTAAATAAAGCTCACGAACTTATTAA
AAAATTAAAAAAAGATTTTCAAAAAACAGAGGATCACATTAAAACTATTCAATATATTGG
TGAAATAATTGGTGAAGTTTTAAGATCATTAGATGAAGAAAGATTTATTGTTAAAGCATG
TAATGGACCAAGATATGTTGTTAGATGTGCAAATTATCAAGATAAAGCACATTTATTAGT
ACCAGGTGCACGTGTTACATTAGATTTAACAACATTAACAATTTTAAAGATATTACCACG
TGAAGTTGATCCAATCATTTTCAATATGACAGCTGAATCACCAGGTAGTGTATCGTATGG
TGAAATTGGTGGATTAAGTAATCAAATCAGAGAGTTAAGAXXXXXXXXXXTTGAAGCTAT
CGCTAAATTCGCTGATGGTTTCAATGCTGCTGATTTACGTAATGTCTGTACTGAAGCTGG
TATGTTTGCAATTAGAGCTGAAAGAGATTATGTAATGGAAGAAGACTTTATGAAAGCTGT
TAGAAAATGTCAAGAAGCAAAGAAATTAGAAGGTAAACTCGATTATCAAAAAGTTTAAAA
AAAAATTTATAATTTCTTTTTTTTTAGGATTAATCTTAAAAATAATAATAATAATAATAA
ACTAAAAATCATGTATCTATCAATTTAATTAAATAAAATAAAAAAATAAAAAAAAAAAGT
TATAAAACAAATAAATTCAAATGTAATAAAAAGAATATTTCTTTTA
sequence update 1996.12.25
Translated Amino Acid sequence 
s*syifnry*yiylkk*nkik*KMSTEETKKEQALQNYRDRLIEHKNAELRLNKAHELIK
KLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLV
PGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELR---

---EAIAKFADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLD
YQKV*kkiynffffrinlknnnnnnklkimylsi*lnkikk*kkkvikqinsnvikrifl
l
Translated Amino Acid sequence (All Frames) 
Frame A:
iiiiyf**iliyifkkik*nkiknvnrgnkkrastskl*rsfnrt*kcrt*ik*ssrty*
kikkrfsknrgsh*nysiyw*nnw*sfkiir*rkiyc*sm*wtkicc*mcklsr*stfis
trctcyirfnninnfkditt*s*snhfqyds*itr*civw*nwwik*snqrvk---

---lklslnslmvsmlliyvmsvlklvclqlelkeim*wkktl*kllenvkkqrn*kvns
iikkfkkkfiisfflglilkiiiiiin*ksciyqfn*ik*knkkkkl*nk*iqm**keyf
f

Frame B:
s*syifnry*yiylkk*nkik*KMSTEETKKEQALQNYRDRLIEHKNAELRLNKAHELIK
KLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLV
PGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELR---

---*syr*ir*wfqcc*ft*cly*swyvcn*s*krlcngrrlyesc*kmsrskeirr*tr
lskslkknl*flff*d*s*k******tknhvsinlik*nkkikkksyktnkfkcnkknis
f

Frame C:
hnhiflididiyi*knkik*nkkcqqrkqkkskhfkiieiv**nikmqnld*ikltnllk
n*kkifkkqritlklfnilvk*lvkf*dh*mkkdlllkhvmdqdmlldvqiikikhiy*y
qvhvlh*i*qh*qf*ryyhvkliqsfsi*qlnhqvvyrmvklvd*vikses*---

---EAIAKFADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLD
YQKV*kkiynffffrinlknnnnnnklkimylsi*lnkikk*kkkvikqinsnvikrifl
l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA21 (FCL-AA21Q) /CSM/FCL/FCL-AA/FCL-AA21Q.Seq.d/                 952   0.0
VFM122 (VFM122Q) /CSM/VF/VFM1-A/VFM122Q.Seq.d/                        622   e-177
SFJ688 (SFJ688Q) /CSM/SF/SFJ6-D/SFJ688Q.Seq.d/                        622   e-177
SFG752 (SFG752Q) /CSM/SF/SFG7-C/SFG752Q.Seq.d/                        622   e-177
AFN612 (AFN612Q) /CSM/AF/AFN6-A/AFN612Q.Seq.d/                        622   e-177
AFF873 (AFF873Q) /CSM/AF/AFF8-D/AFF873Q.Seq.d/                        622   e-177
AFF540 (AFF540Q) /CSM/AF/AFF5-B/AFF540Q.Seq.d/                        622   e-177
AFF518 (AFF518Q) /CSM/AF/AFF5-A/AFF518Q.Seq.d/                        622   e-177
AFE753 (AFE753Q) /CSM/AF/AFE7-C/AFE753Q.Seq.d/                        622   e-177
AFD621 (AFD621Q) /CSM/AF/AFD6-A/AFD621Q.Seq.d/                        622   e-177
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU715671|BU715671.1 SJMCHC12 SJM Schistosoma japonicum cDNA, mRNA sequence.    64  9e-11  2
BU778069|BU778069.1 SJEDRA12 SJE Schistosoma japonicum cDNA, mRNA sequence.    64  1e-10  2
BU769581|BU769581.1 SJECGF01 SJE Schistosoma japonicum cDNA, mRNA sequence.    64  1e-10  2
BI815862|BI815862.1 PfESToaa33e12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:PRSX_CAEEL O17071 PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B. [1] ;, mRNA sequence.    78  2e-10  1
BI815262|BI815262.1 PfESToaa16d01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9W414 Q9W414 RPT4 PROTEIN. ;, mRNA sequence.    78  2e-10  1
BQ596428|BQ596428.1 PfESToab33f08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9W414 Q9W414 RPT4 PROTEIN. ;, mRNA sequence.    78  2e-10  1
BU495650|BU495650.1 PfESToab75g10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9W414 Q9W414 RPT4 PROTEIN. ;, mRNA sequence.    78  2e-10  1
BQ577133|BQ577133.1 PfESToab14c09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:PRSX_CAEEL O17071 PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B. [1] ;, mRNA sequence.    70  5e-08  1
E14360|E14360.1 Human mRNA for p42 protein involved in 26S proteasome,complete cds.    42  2e-07  3
BD137523|BD137523.1 Human gene.                                   42  2e-07  3
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY892558_1(AY892558|pid:none) Synthetic construct Homo sapiens c...   149   1e-34
AX885317_1(AX885317|pid:none) Sequence 1180 from Patent EP1033401.    149   1e-34
CQ840920_1(CQ840920|pid:none) Sequence 15 from Patent EP1439230....   149   1e-34
BC057997_1(BC057997|pid:none) Mus musculus proteasome (prosome, ...   149   2e-34
BC073644_1(BC073644|pid:none) Xenopus laevis similar to proteaso...   149   2e-34
BC064227_1(BC064227|pid:none) Xenopus tropicalis proteasome (pro...   149   2e-34
AK014354_1(AK014354|pid:none) Mus musculus 17 days embryo head c...   148   3e-34
BC097594_1(BC097594|pid:none) Xenopus laevis hypothetical protei...   147   3e-34
BC107950_1(BC107950|pid:none) Rattus norvegicus proteasome (pros...   147   4e-34
EF103411_1(EF103411|pid:none) Haliotis discus discus psmc6 prote...   147   4e-34
protein update 2009. 4.14
PSORT 

 psg: 0.44  gvh: 0.02  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FCL-AA21 is nuc
5' end seq. ID FCL-AA21F
5' end seq. 
>FCL-AA21F.Seq
ATCATAATCATATATTTTTAATAGATATTGATATATATATTTAAAAAAATAAAATAAAAT
AAAATAAAAAATGTCAACAGAGGAAACAAAAAAAGAGCAAGCACTTCAAAATTATAGAGA
TCGTTTAATAGAACATAAAAATGCAGAACTTAGATTAAATAAAGCTCACGAACTTATTAA
AAAATTAAAAAAAGATTTTCAAAAAACAGAGGATCACATTAAAACTATTCAATATATTGG
TGAAATAATTGGTGAAGTTTTAAGATCATTAGATGAAGAAAGATTTATTGTTAAAGCATG
TAATGGACCAAGATATGTTGTTAGATGTGCAAATTATCAAGATAAAGCACATTTATTAGT
ACCAGGTGCACGTGTTACATTAGATTTAACAACATTAACAATTTTAAAGATATTACCACG
TGAAGTTGATCCAATCATTTTCAATATGACAGCTGAATCACCAGGTAGTGTATCGTATGG
TGAAATTGGTGGATTAAGTAATCAAATCAGAGAGTTAAGA----------
Length of 5' end seq. 520
3' end seq. ID FCL-AA21Z
3' end seq. 
>FCL-AA21Z.Seq
----------TTGAAGCTATCGCTAAATTCGCTGATGGTTTCAATGCTGCTGATTTACGT
AATGTCTGTACTGAAGCTGGTATGTTTGCAATTAGAGCTGAAAGAGATTATGTAATGGAA
GAAGACTTTATGAAAGCTGTTAGAAAATGTCAAGAAGCAAAGAAATTAGAAGGTAAACTC
GATTATCAAAAAGTTTAAAAAAAAATTTATAATTTCTTTTTTTTTAGGATTAATCTTAAA
AATAATAATAATAATAATAAACTAAAAATCATGTATCTATCAATTTAATTAAATAAAATA
AAAAAATAAAAAAAAAAAGTTATAAAACAAATAAATTCAAATGTAATAAAAAGAATATTT
CTTTTA
Length of 3' end seq. 356
Connected seq. ID FCL-AA21P
Connected seq. 
>FCL-AA21P.Seq
ATCATAATCATATATTTTTAATAGATATTGATATATATATTTAAAAAAATAAAATAAAAT
AAAATAAAAAATGTCAACAGAGGAAACAAAAAAAGAGCAAGCACTTCAAAATTATAGAGA
TCGTTTAATAGAACATAAAAATGCAGAACTTAGATTAAATAAAGCTCACGAACTTATTAA
AAAATTAAAAAAAGATTTTCAAAAAACAGAGGATCACATTAAAACTATTCAATATATTGG
TGAAATAATTGGTGAAGTTTTAAGATCATTAGATGAAGAAAGATTTATTGTTAAAGCATG
TAATGGACCAAGATATGTTGTTAGATGTGCAAATTATCAAGATAAAGCACATTTATTAGT
ACCAGGTGCACGTGTTACATTAGATTTAACAACATTAACAATTTTAAAGATATTACCACG
TGAAGTTGATCCAATCATTTTCAATATGACAGCTGAATCACCAGGTAGTGTATCGTATGG
TGAAATTGGTGGATTAAGTAATCAAATCAGAGAGTTAAGA----------TTGAAGCTAT
CGCTAAATTCGCTGATGGTTTCAATGCTGCTGATTTACGTAATGTCTGTACTGAAGCTGG
TATGTTTGCAATTAGAGCTGAAAGAGATTATGTAATGGAAGAAGACTTTATGAAAGCTGT
TAGAAAATGTCAAGAAGCAAAGAAATTAGAAGGTAAACTCGATTATCAAAAAGTTTAAAA
AAAAATTTATAATTTCTTTTTTTTTAGGATTAATCTTAAAAATAATAATAATAATAATAA
ACTAAAAATCATGTATCTATCAATTTAATTAAATAAAATAAAAAAATAAAAAAAAAAAGT
TATAAAACAAATAAATTCAAATGTAATAAAAAGAATATTTCTTTTA
Length of connected seq. 876
Full length Seq ID -
Full length Seq. -
Length of full length seq. -