FCL-AA20
Library FCL
(Link to library)
Clone ID FCL-AA20
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15052-1
Original site URL
Representative seq. ID FCL-AA20E
(Link to Original site)
Representative DNA sequence
>FCL-AA20 (FCL-AA20Q) /CSM/FCL/FCL-AA/FCL-AA20Q.Seq.d/
AAAACATTTACAAATGATGACCACAGAAGATGTACAACCAATTGAAACTACCAAAGATGG
TGTAGTAGTATTAAATTATAGCGATTTAATTGCAGGTAAAGATTTATCAGACTCAATTGA
AAAAGCCTATGGTTACAGTGGTCATGGTTTATTAGTTGTTAAAGGTATTCCATCAATTGT
TGAATTACGTGAAAGATTATTAAATCTTGCACCAAGATATTCAGCACTTCCAGATGAAAT
CAAAGAAAAAAGTGTACACAAAGAAAGTAATTTCTCATTTGGTTGGAGTCATGGTAAAGA
AATTTTAAGACCAGGTGTATTTGATGAATATAAAGGATCATATTATAATAATCCACAATA
TGATCAACCATTTGAAGATGAAAAAATGATTAAAGAATTTCCAGAATCATGTCACCCAAA
TATTTGGCCAGTTGAAGATTTTCCAGAGATGAGACAAGCATTTATGGAATTAGGTCAAAC
CATTGTAAATGTTGGACAATTGGTAGCAAGACAATGTGATAAGTATACAGTTAAACAATG
TGAAGATTATAAAGCAGATACATTGGAAACAGTGATTAAGGAGTCATTGACATGTAAAGC
ACGTCTATTATACTATTTCCCAATCAATGAGGATCAATCTGAGAGATCAAGAGACTCATG
GTGCGGTTGGCATAATGATCATAGTTCATTGACTGGTTTATGTCCAGCAATGTATTTTAC
AATGTCTGAAGATGGCAAACTTGTTGTCAACTCTGATATCCCATGTCCAGATGCCGAAGC
TGGTTTATATGCAAAATCACGTGATGAAAAAGAAGTTAAAATCGCAATTCCAAAAGATTG
TATCGCCTATCAAATCGGTGAATGTTCACAAATTCAAACTGGTGGTCTCTTAAGAGCTAC
ACCACATGCAGTTCAAGCTATTAAATATCCAGAAAGTAAAAATGTTGGTCGTGGTACTTT
TGCTGTCTTTATGCAACCAAACGTTGATGTTGTTTTAAATACTCCAAAAGGAAAAGAAAA
TACTTTTGTTGGTCAGTATAAACCTGGTATGAATTTTGCTGAATTCTCAAAAGTAACAAT
CGAAAATTATTATTCTGAATAAATAAAAAAAAAAAAAATAAAAAAAAAAATATAATTTTT
TAAAAAAAAATAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
KHLQMMTTEDVQPIETTKDGVVVLNYSDLIAGKDLSDSIEKAYGYSGHGLLVVKGIPSIV
ELRERLLNLAPRYSALPDEIKEKSVHKESNFSFGWSHGKEILRPGVFDEYKGSYYNNPQY
DQPFEDEKMIKEFPESCHPNIWPVEDFPEMRQAFMELGQTIVNVGQLVARQCDKYTVKQC
EDYKADTLETVIKESLTCKARLLYYFPINEDQSERSRDSWCGWHNDHSSLTGLCPAMYFT
MSEDGKLVVNSDIPCPDAEAGLYAKSRDEKEVKIAIPKDCIAYQIGECSQIQTGGLLRAT
PHAVQAIKYPESKNVGRGTFAVFMQPNVDVVLNTPKGKENTFVGQYKPGMNFAEFSKVTI
ENYYSE*ikkkkikkki*ffkkk*kk


Translated Amino Acid sequence (All Frames)
Frame A:
ktftnddhrrcttn*nyqrwcssikl*rfncr*rfirln*kslwlqwswfisc*rysinc
*it*kiiksctkifstsr*nqrkkctqrk*fliwlesw*rnfktrci**i*riil**sti
*sti*r*knd*risrimspkylas*rfsrdetsiygirsnhckcwtigsktm**vys*tm
*rl*sryignsd*gvidm*stsiilfpnq*gsi*eikrlmvrla**s*fidwfmssnvfy
nv*rwqtccql*ypmsrcrswfickit**krs*nrnskrlyrlsnr*mftnsnwwslksy
ttcsssy*isrk*kcwswyfcclyatkr*ccfkyskrkrkyfcwsv*twyefc*ilksnn
rkllf*inkkkknkkkniif*kkikk


Frame B:
KHLQMMTTEDVQPIETTKDGVVVLNYSDLIAGKDLSDSIEKAYGYSGHGLLVVKGIPSIV
ELRERLLNLAPRYSALPDEIKEKSVHKESNFSFGWSHGKEILRPGVFDEYKGSYYNNPQY
DQPFEDEKMIKEFPESCHPNIWPVEDFPEMRQAFMELGQTIVNVGQLVARQCDKYTVKQC
EDYKADTLETVIKESLTCKARLLYYFPINEDQSERSRDSWCGWHNDHSSLTGLCPAMYFT
MSEDGKLVVNSDIPCPDAEAGLYAKSRDEKEVKIAIPKDCIAYQIGECSQIQTGGLLRAT
PHAVQAIKYPESKNVGRGTFAVFMQPNVDVVLNTPKGKENTFVGQYKPGMNFAEFSKVTI
ENYYSE*ikkkkikkki*ffkkk*kk


Frame C:
niyk**pqkmynqlklpkmv**y*iiai*lqvkiyqtqlkkpmvtvvmvy*llkvfhqll
nyvkdy*ilhqdiqhfqmkskkkvytkkvishlvgvmvkkf*dqvylmnikdhiiiihnm
inhlkmkk*lknfqnhvtqifgqlkifqr*dkhlwn*vkpl*mldnw*qdnvisiqlnnv
kiikqihwkq*lrsh*hvkhvyytisqsmrinlrdqethgavgimiivh*lvyvqqcilq
clkmanllstlishvqmpklvymqnhvmkkklksqfqkivspiksvnvhkfklvvs*elh
hmqfkllniqkvkmlvvvlllslcnqtlmlf*ilqkekkilllvsinlv*illnsqk*qs
kiiilnk*kkkk*kkkynflkknkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA20 (FCL-AA20Q) /CSM/FCL/FCL-AA/FCL-AA20Q.Seq.d/ 2181 0.0
VFE402 (VFE402Q) /CSM/VF/VFE4-A/VFE402Q.Seq.d/ 2145 0.0
VFK652 (VFK652Q) /CSM/VF/VFK6-C/VFK652Q.Seq.d/ 2113 0.0
VFG805 (VFG805Q) /CSM/VF/VFG8-A/VFG805Q.Seq.d/ 2111 0.0
VFG743 (VFG743Q) /CSM/VF/VFG7-B/VFG743Q.Seq.d/ 2111 0.0
VFO711 (VFO711Q) /CSM/VF/VFO7-A/VFO711Q.Seq.d/ 2105 0.0
VFE483 (VFE483Q) /CSM/VF/VFE4-D/VFE483Q.Seq.d/ 1792 0.0
VFB212 (VFB212Q) /CSM/VF/VFB2-A/VFB212Q.Seq.d/ 1566 0.0
VFL563 (VFL563Q) /CSM/VF/VFL5-C/VFL563Q.Seq.d/ 1281 0.0
VFC848 (VFC848Q) /CSM/VF/VFC8-B/VFC848Q.Seq.d/ 1279 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 1542 0.0 10
AL447850|AL447850.1 Paramecium tetraurelia sequence M23B03r of the end of plasmid PT023C05. Weak similarity to HYPOTHETICAL 34.3 KD PROTEIN. 40 0.009 3
AC119900|AC119900.2 Mus musculus clone RP24-235K6, WORKING DRAFT SEQUENCE, 76 unordered pieces. 32 0.059 12
AL139074|AL139074.2 Campylobacter jejuni NCTC11168 complete genome; segment 1/6. 32 0.073 17
AC069572|AC069572.2 Homo sapiens chromosome 18 clone RP11-607C2 map 18, WORKING DRAFT SEQUENCE, 37 unordered pieces. 34 0.24 9
AC098436|AC098436.4 Rattus norvegicus clone CH230-1I12, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 48 0.27 1
AC123659|AC123659.3 Mus musculus clone RP23-192P18, WORKING DRAFT SEQUENCE, 20 unordered pieces. 34 0.28 12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.35 13
AE015943|AE015943.1 Clostridium tetani E88, section 8 of 10 of the complete genome. 32 0.47 11
AL365328|AL365328.18 Human DNA sequence from clone RP11-362K18 on chromosome 6. 44 0.50 2
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116924_10(AC116924|pid:none) Dictyostelium discoideum chromoso... 749 0.0
CP000113_7134(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 429 e-119
AC104709_4(AC104709|pid:none) Oryza sativa (japonica cultivar-gr... 265 2e-69
EU973028_1(EU973028|pid:none) Zea mays clone 391970 hypothetical... 248 3e-64
CP001160_130(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 246 1e-63
AM920431_935(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 218 2e-55
BX842632_25(BX842632|pid:none) Neurospora crassa DNA linkage gro... 201 5e-50
CU633438_716(CU633438|pid:none) Podospora anserina genomic DNA c... 171 3e-41
EU956063_1(EU956063|pid:none) Zea mays clone 1556707 unknown mRNA. 164 4e-39
CP001160_454(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 161 4e-38
protein update 2009. 7. 3
PSORT

psg: 0.75 gvh: 0.48 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for FCL-AA20 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FCL-AA20E
Full length Seq.
>FCL-AA20E.Seq
AAAACATTTACAAATGATGACCACAGAAGATGTACAACCAATTGAAACTACCAAAGATGG
TGTAGTAGTATTAAATTATAGCGATTTAATTGCAGGTAAAGATTTATCAGACTCAATTGA
AAAAGCCTATGGTTACAGTGGTCATGGTTTATTAGTTGTTAAAGGTATTCCATCAATTGT
TGAATTACGTGAAAGATTATTAAATCTTGCACCAAGATATTCAGCACTTCCAGATGAAAT
CAAAGAAAAAAGTGTACACAAAGAAAGTAATTTCTCATTTGGTTGGAGTCATGGTAAAGA
AATTTTAAGACCAGGTGTATTTGATGAATATAAAGGATCATATTATAATAATCCACAATA
TGATCAACCATTTGAAGATGAAAAAATGATTAAAGAATTTCCAGAATCATGTCACCCAAA
TATTTGGCCAGTTGAAGATTTTCCAGAGATGAGACAAGCATTTATGGAATTAGGTCAAAC
CATTGTAAATGTTGGACAATTGGTAGCAAGACAATGTGATAAGTATACAGTTAAACAATG
TGAAGATTATAAAGCAGATACATTGGAAACAGTGATTAAGGAGTCATTGACATGTAAAGC
ACGTCTATTATACTATTTCCCAATCAATGAGGATCAATCTGAGAGATCAAGAGACTCATG
GTGCGGTTGGCATAATGATCATAGTTCATTGACTGGTTTATGTCCAGCAATGTATTTTAC
AATGTCTGAAGATGGCAAACTTGTTGTCAACTCTGATATCCCATGTCCAGATGCCGAAGC
TGGTTTATATGCAAAATCACGTGATGAAAAAGAAGTTAAAATCGCAATTCCAAAAGATTG
TATCGCCTATCAAATCGGTGAATGTTCACAAATTCAAACTGGTGGTCTCTTAAGAGCTAC
ACCACATGCAGTTCAAGCTATTAAATATCCAGAAAGTAAAAATGTTGGTCGTGGTACTTT
TGCTGTCTTTATGCAACCAAACGTTGATGTTGTTTTAAATACTCCAAAAGGAAAAGAAAA
TACTTTTGTTGGTCAGTATAAACCTGGTATGAATTTTGCTGAATTCTCAAAAGTAACAAT
CGAAAATTATTATTCTGAATAAATAAAAAAAAAAAAAATAAAAAAAAAAATATAATTTTT
TAAAAAAAAATAAAAAAAA
Length of full length seq. 1159