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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA19
Library FCL
(Link to library)
Clone ID FCL-AA19
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16036-1
Original site URL
Representative seq. ID FCL-AA19P
(Link to Original site)
Representative DNA sequence 
>FCL-AA19 (FCL-AA19Q) /CSM/FCL/FCL-AA/FCL-AA19Q.Seq.d/
ATTTTTATACTTATCCATATTTATTCTTTTTAAATATTTATCACATTTTTTTTTTATTTT
TTTTTATTAATCACATATTTTCTTTGGAAAAATCAAAAAAATCAAAAAAAAAAAAAAAAA
TCAAATTTATTCAAAAAAACCAATTAATCTAATCAAAGAAACGTCAAAATATAAAAAAAA
TAATAGTAAAAATAACTATCATTACCAATAAATTTAATATTTAATAAAAAATATAAATAT
ATATATXXXXXXXXXXCCAACTCAAGAAGATGTTCTTAGATGTCGTCAACGTACTACAGG
TATGAAAGAAACTCAATTCAATGTTGAGGATATTAAATTCCGTTTAATCGATGTTGGTGG
TCAAAAGAATGAACGTAGAAAATGGATGCATTATTTCGAAGATGTTAAATCAATTATATT
TTGCGTTGCACTTGGTGATTATGATATGAACCTCGTAGAAGATGAAACTATAAATAGAAT
GGAAGATTCTTTAAAACTTTGGAATGATATCGTAAATAATCCATTTTTCAAAAATACTTC
ATTTGTTCTTTTCTTAAACAAAAATGATATTTTTAGAGAAAAAATTAAAAAGATACCATT
AGTTGATTATTTCCCAGATTACCAAGGTGGTTATAATTATGAAAAAGGTATTGAATATAT
TCGTAATAAATTCTTCTCATCCGTTCCAACAGCTACTACAATTGTTGCACATGTTACTAC
TGCCACTGATACTGAAAATATCACAATTGTATTTGACGCAGTTAGAAGAAATATTATTCA
ATCTATCTTAAAACTTCACTATTAAGGTGTGATGGAATGAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence 
ifilihiysf*ifitfffyffllityflwknqknqkkkkksnlfkktn*snqrnvki*kk
***k*LSLPINLIFNKKYKYIY---

---PTQEDVLRCRQRTTGMKETQFNVEDIKFRLIDVGGQKNERRKWMHYFEDVKSIIFCV
ALGDYDMNLVEDETINRMEDSLKLWNDIVNNPFFKNTSFVLFLNKNDIFREKIKKIPLVD
YFPDYQGGYNYEKGIEYIRNKFFSSVPTATTIVAHVTTATDTENITIVFDAVRRNIIQSI
LKLHY*gvme*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ifilihiysf*ifitfffyffllityflwknqknqkkkkksnlfkktn*snqrnvki*kk
***k*LSLPINLIFNKKYKYIY---

---PTQEDVLRCRQRTTGMKETQFNVEDIKFRLIDVGGQKNERRKWMHYFEDVKSIIFCV
ALGDYDMNLVEDETINRMEDSLKLWNDIVNNPFFKNTSFVLFLNKNDIFREKIKKIPLVD
YFPDYQGGYNYEKGIEYIRNKFFSSVPTATTIVAHVTTATDTENITIVFDAVRRNIIQSI
LKLHY*gvme*k

Frame B:
flylsifilfkylshfffiffy*shiffgkikkikkkkknqiyskkpinliketskykkn
nsknnyhyq*i*ylikniniy---

---qlkkmfldvvnvlqv*kklnsmlrilnsv*smlvvkrmnvengciiskmlnqlyfal
hlvimi*ts*kmkl*iewkil*nfgmis*iihfskilhlffs*tkmiflekklkryh*li
isqitkvviimkkvlnifvinsshpfqqllqllhmlllplilkisqlyltqleeilfnls
*nftikv*wnek

Frame C:
fytypylfflniyhifflfffinhifslekskkskkkkkikfiqknqli*skkrqnikki
ivkitiitnkfni**ki*iyi---

---nsrrcs*msstyyryernsiqc*gy*ipfnrcwwske*t*kmdalfrrc*inyilrc
tw*l*yeprrr*nyk*ngrffktle*yrk*sifqkyficsflkqk*yf*rkn*kdtis*l
fprlprwl*l*kry*iys**illirsnsyyncctcyych*y*kyhnci*rs*kkyysiyl
ktsllrcdgmk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA19 (FCL-AA19Q) /CSM/FCL/FCL-AA/FCL-AA19Q.Seq.d/                 638   0.0
SSB349 (SSB349Q) /CSM/SS/SSB3-C/SSB349Q.Seq.d/                        391   e-107
FCL-AC11 (FCL-AC11Q) /CSM/FCL/FCL-AC/FCL-AC11Q.Seq.d/                 103   4e-21
VSE454 (VSE454Q) /CSM/VS/VSE4-C/VSE454Q.Seq.d/                         90   6e-17
VSD481 (VSD481Q) /CSM/VS/VSD4-D/VSD481Q.Seq.d/                         52   1e-05
VFF258 (VFF258Q) /CSM/VF/VFF2-C/VFF258Q.Seq.d/                         52   1e-05
FC-BL01 (FC-BL01Q) /CSM/FC/FC-BL/FC-BL01Q.Seq.d/                       52   1e-05
FC-BJ21 (FC-BJ21Q) /CSM/FC/FC-BJ/FC-BJ21Q.Seq.d/                       52   1e-05
FC-489 (FC-489Q) /CSM/CG/CG-FC/FC-489Q.Seq.d/                          52   1e-05
SSK311 (SSK311Q) /CSM/SS/SSK3-A/SSK311Q.Seq.d/                         46   8e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M25060|M25060.1 D.discoideum G protein alpha-subunit 1 mRNA, complete cds.    44  6e-08  4
AJ250443|AJ250443.1 Calliphora vicina mRNA for guanine nucleotide-binding protein alpha subunit.    42  1e-04  3
AC125147|AC125147.4 Mus musculus chromosome 7 clone RP24-350A15, complete sequence.    50  0.043  1
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34  0.12  11
AQ449941|AQ449941.1 500006B06.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    48  0.17  1
AC129913|AC129913.2 Homo sapiens chromosome 11, clone CTD-2382G9, complete sequence.    40  0.19  5
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40  0.19  6
AC006911|AC006911.1 Caenorhabditis elegans clone Y94H6x, WORKING DRAFT SEQUENCE, 15 unordered pieces.    42  0.41  6
AC090832|AC090832.5 Homo sapiens chromosome 11, clone CTD-2353H9, complete sequence.    40  0.49  4
AQ913456|AQ913456.1 nbeb0041N01f CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0041N01f, genomic survey sequence.    40  0.50  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R41) RecName: Full=Guanine nucleotide-binding protein alpha-...   335   1e-90
(P34043) RecName: Full=Guanine nucleotide-binding protein alpha-...   177   5e-43
CR859352_1(CR859352|pid:none) Pongo abelii mRNA; cDNA DKFZp469C1...   174   4e-42
DQ917648_1(DQ917648|pid:none) Sus scrofa GBI1 mRNA, complete cds.     174   4e-42
PDBN(1CIP)A MOL_ID: 1;MOL_ID: 1; MOLECULE: GUANINE NUCLEOTIDE-BI...   174   4e-42
(P63096) RecName: Full=Guanine nucleotide-binding protein G(i), ...   174   4e-42
(P38401) RecName: Full=Guanine nucleotide-binding protein G(i), ...   174   4e-42
(P10824) RecName: Full=Guanine nucleotide-binding protein G(i), ...   174   4e-42
L24550_1(L24550|pid:none) Gallus gallus G protein alpha subunit ...   173   7e-42
L24551_1(L24551|pid:none) Gallus gallus G protein (Galpa i3-o) m...   173   7e-42
protein update 2009. 4.14
PSORT 

 psg: 0.59  gvh: 0.24  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for FCL-AA19 is cyt
5' end seq. ID FCL-AA19F
5' end seq. 
>FCL-AA19F.Seq
ATTTTTATACTTATCCATATTTATTCTTTTTAAATATTTATCACATTTTTTTTTTATTTT
TTTTTATTAATCACATATTTTCTTTGGAAAAATCAAAAAAATCAAAAAAAAAAAAAAAAA
TCAAATTTATTCAAAAAAACCAATTAATCTAATCAAAGAAACGTCAAAATATAAAAAAAA
TAATAGTAAAAATAACTATCATTACCAATAAATTTAATATTTAATAAAAAATATAAATAT
ATATAT----------
Length of 5' end seq. 246
3' end seq. ID FCL-AA19Z
3' end seq. 
>FCL-AA19Z.Seq
----------CCAACTCAAGAAGATGTTCTTAGATGTCGTCAACGTACTACAGGTATGAA
AGAAACTCAATTCAATGTTGAGGATATTAAATTCCGTTTAATCGATGTTGGTGGTCAAAA
GAATGAACGTAGAAAATGGATGCATTATTTCGAAGATGTTAAATCAATTATATTTTGCGT
TGCACTTGGTGATTATGATATGAACCTCGTAGAAGATGAAACTATAAATAGAATGGAAGA
TTCTTTAAAACTTTGGAATGATATCGTAAATAATCCATTTTTCAAAAATACTTCATTTGT
TCTTTTCTTAAACAAAAATGATATTTTTAGAGAAAAAATTAAAAAGATACCATTAGTTGA
TTATTTCCCAGATTACCAAGGTGGTTATAATTATGAAAAAGGTATTGAATATATTCGTAA
TAAATTCTTCTCATCCGTTCCAACAGCTACTACAATTGTTGCACATGTTACTACTGCCAC
TGATACTGAAAATATCACAATTGTATTTGACGCAGTTAGAAGAAATATTATTCAATCTAT
CTTAAAACTTCACTATTAAGGTGTGATGGAATGAAAAA
Length of 3' end seq. 568
Connected seq. ID FCL-AA19P
Connected seq. 
>FCL-AA19P.Seq
ATTTTTATACTTATCCATATTTATTCTTTTTAAATATTTATCACATTTTTTTTTTATTTT
TTTTTATTAATCACATATTTTCTTTGGAAAAATCAAAAAAATCAAAAAAAAAAAAAAAAA
TCAAATTTATTCAAAAAAACCAATTAATCTAATCAAAGAAACGTCAAAATATAAAAAAAA
TAATAGTAAAAATAACTATCATTACCAATAAATTTAATATTTAATAAAAAATATAAATAT
ATATAT----------CCAACTCAAGAAGATGTTCTTAGATGTCGTCAACGTACTACAGG
TATGAAAGAAACTCAATTCAATGTTGAGGATATTAAATTCCGTTTAATCGATGTTGGTGG
TCAAAAGAATGAACGTAGAAAATGGATGCATTATTTCGAAGATGTTAAATCAATTATATT
TTGCGTTGCACTTGGTGATTATGATATGAACCTCGTAGAAGATGAAACTATAAATAGAAT
GGAAGATTCTTTAAAACTTTGGAATGATATCGTAAATAATCCATTTTTCAAAAATACTTC
ATTTGTTCTTTTCTTAAACAAAAATGATATTTTTAGAGAAAAAATTAAAAAGATACCATT
AGTTGATTATTTCCCAGATTACCAAGGTGGTTATAATTATGAAAAAGGTATTGAATATAT
TCGTAATAAATTCTTCTCATCCGTTCCAACAGCTACTACAATTGTTGCACATGTTACTAC
TGCCACTGATACTGAAAATATCACAATTGTATTTGACGCAGTTAGAAGAAATATTATTCA
ATCTATCTTAAAACTTCACTATTAAGGTGTGATGGAATGAAAAA
Length of connected seq. 814
Full length Seq ID -
Full length Seq. -
Length of full length seq. -