>FCL-AA18 (FCL-AA18Q) /CSM/FCL/FCL-AA/FCL-AA18Q.Seq.d/
XXXXXXXXXXGTCAATGTCATTATTGGTGAACAATCTGATGGTTCGTTGGAACAAATCGC
TAGAAATCCACAACCAATTTGGATTAGATCAGTTGCAATGATAAATGATGACTATTTCAT
TGGTGCTGAAGCAAGTAATAATTTCATCGTTGTCAAAAAGAATAATGATTCAACTAATGA
GCTAGAGAGAGAGCTATTGGATAGTGTTGGTCATTATCATATTGGTGAATCAATCAATTC
AATGAGACATGGTTCATTAGTACGTTTACCAGATTCAGATCAACCAATTATTCCTACAAT
CCTTTATGCTTCTGTCAATGGTTCAATTGGTGTAGTTGCCTCTATCTCTGAAGAGGATTT
CATCTTTTTCTCAAAATTACAAAAGGGTTTAAATCAAGTAGTTCGTGGTGTTGGTGGTTT
CAGTCATGAAACTTGGAGAGCTTTCTCAAATGATCATCATACTATTGACTCTAAAAATTT
CATTGATGGTGACTTAATTGAAACTTTCTTGGATCTCAAATATGAAAGTCAATTAAAAGC
TGTTGCTGATTTAGGAATAACTCCTGATGATGCATTTAGAAGAATTGAATCTTTAATGCA
ATATATTCGTTAATCAAAAAAAAAAAAAAAAAA

---NVIIGEQSDGSLEQIARNPQPIWIRSVAMINDDYFIGAEASNNFIVVKKNNDSTNEL
ERELLDSVGHYHIGESINSMRHGSLVRLPDSDQPIIPTILYASVNGSIGVVASISEEDFI
FFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFIDGDLIETFLDLKYESQLKAV
ADLGITPDDAFRRIESLMQYIR*skkkkk

Frame A:
---smsllvnnlmvrwnksleihnqfgldqlq**mmtislvlkqviisslskrimiqlms
*resywivlviiilvnqsiq*dmvh*yvyqiqinqlflqsfmllsmvqlv*lplslkris
sfsqnykrv*ik*fvvlvvsvmklgelsqmiiilltlkislmvt*lklswisnmkvn*kl
lli*e*llmmhleelnl*cnifvnqkkkkk


Frame B:
---qchyw*ti*wfvgtnr*ksttnld*iscndk**lfhwc*sk**fhrcqke**fn**a
reraig*cwslsyw*inqfnetwfistftrfrstnysynplcfcqwfnwcsclyl*rgfh
lflkitkgfksssswcwwfqs*nlesflk*ssyy*l*kfh*w*ln*nflgsqi*ksiksc
c*frnns**ci*kn*ifnaiyslikkkkkk


Frame C:
---NVIIGEQSDGSLEQIARNPQPIWIRSVAMINDDYFIGAEASNNFIVVKKNNDSTNEL
ERELLDSVGHYHIGESINSMRHGSLVRLPDSDQPIIPTILYASVNGSIGVVASISEEDFI
FFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFIDGDLIETFLDLKYESQLKAV
ADLGITPDDAFRRIESLMQYIR*skkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA18 (FCL-AA18Q) /CSM/FCL/FCL-AA/FCL-AA18Q.Seq.d/                1199   0.0
SSF260 (SSF260Q) /CSM/SS/SSF2-C/SSF260Q.Seq.d/                        906   0.0
VFA225 (VFA225Q) /CSM/VF/VFA2-B/VFA225Q.Seq.d/                         40   0.040
SSB830 (SSB830Q) /CSM/SS/SSB8-B/SSB830Q.Seq.d/                         38   0.16
SLA748 (SLA748Q) /CSM/SL/SLA7-B/SLA748Q.Seq.d/                         38   0.16
SSM740 (SSM740Q) /CSM/SS/SSM7-B/SSM740Q.Seq.d/                         36   0.62
SSI643 (SSI643Q) /CSM/SS/SSI6-B/SSI643Q.Seq.d/                         36   0.62
SSC562 (SSC562Q) /CSM/SS/SSC5-C/SSC562Q.Seq.d/                         36   0.62
SLF724 (SLF724Q) /CSM/SL/SLF7-A/SLF724Q.Seq.d/                         36   0.62
SFK480 (SFK480Q) /CSM/SF/SFK4-D/SFK480Q.Seq.d/                         36   0.62

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U50042|U50042.1 Dictyostelium discoideum repE homolog of UV-damaged DNA binding protein (repE) gene, complete cds.  1166  0.0  2
AW738868|AW738868.1 gb03e03.y1 Moss EST library PPN Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPN070705 5' similar to TR:O49552 O49552 UV-DAMAGED DNA-BINDING PROTEIN- LIKE. ;, mRNA sequence.    34  5.0  2
AX346415|AX346415.1 Sequence 1486 from Patent WO0200928.          36  5.4  2
AC015744|AC015744.3 Homo sapiens clone RP11-1G13, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42  7.9  1
CC501082|CC501082.1 CH240_339G10.T7 CHORI-240 Bos taurus genomic clone CH240_339G10, genomic survey sequence.    42  7.9  1
Z68908|Z68908.1 Human DNA sequence from cosmid U227D1, between markers DXS366 and DXS87 on chromosome X.    42  7.9  1
AB023039|AB023039.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIF21.    42  7.9  1
BH575718|BH575718.1 BOHQQ24TF BOHQ Brassica oleracea genomic clone BOHQQ24, DNA sequence.    42  7.9  1
CD483622|CD483622.1 atr01-24ms1-c02 Atr01 Amborella trichopoda cDNA clone atr01-24ms1-c02 5', mRNA sequence.    42  7.9  1
CD836058|CD836058.1 BN45.047I14F020102 BN45 Brassica napus cDNA clone BN45047I14, mRNA sequence.    42  7.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6E7D1) RecName: Full=DNA damage-binding protein 1; AltName: Fu...   184   2e-45
(Q6QNU4) RecName: Full=DNA damage-binding protein 1; AltName: Fu...   184   2e-45
AC130728_8(AC130728|pid:none) Oryza sativa (japonica cultivar-gr...   181   1e-44
AK230366_1(AK230366|pid:none) Arabidopsis thaliana mRNA for UV-d...   181   2e-44
AY074257_1(AY074257|pid:none) Arabidopsis thaliana putative UV-d...   181   2e-44
BT054253_1(BT054253|pid:none) Zea mays full-length cDNA clone ZM...   178   9e-44
AB037144_1(AB037144|pid:none) Oryza sativa Japonica Group OsUV-D...   178   1e-43
(O49552) RecName: Full=DNA damage-binding protein 1b; AltName: F...   177   3e-43
AL021960_4(AL021960|pid:none) Arabidopsis thaliana DNA chromosom...   177   3e-43
AK220648_1(AK220648|pid:none) Arabidopsis thaliana mRNA for UV-d...   177   3e-43

 psg: 0.75  gvh: 0.36  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FCL-AA18 is cyt

>FCL-AA18Z.Seq
----------GTCAATGTCATTATTGGTGAACAATCTGATGGTTCGTTGGAACAAATCGC
TAGAAATCCACAACCAATTTGGATTAGATCAGTTGCAATGATAAATGATGACTATTTCAT
TGGTGCTGAAGCAAGTAATAATTTCATCGTTGTCAAAAAGAATAATGATTCAACTAATGA
GCTAGAGAGAGAGCTATTGGATAGTGTTGGTCATTATCATATTGGTGAATCAATCAATTC
AATGAGACATGGTTCATTAGTACGTTTACCAGATTCAGATCAACCAATTATTCCTACAAT
CCTTTATGCTTCTGTCAATGGTTCAATTGGTGTAGTTGCCTCTATCTCTGAAGAGGATTT
CATCTTTTTCTCAAAATTACAAAAGGGTTTAAATCAAGTAGTTCGTGGTGTTGGTGGTTT
CAGTCATGAAACTTGGAGAGCTTTCTCAAATGATCATCATACTATTGACTCTAAAAATTT
CATTGATGGTGACTTAATTGAAACTTTCTTGGATCTCAAATATGAAAGTCAATTAAAAGC
TGTTGCTGATTTAGGAATAACTCCTGATGATGCATTTAGAAGAATTGAATCTTTAATGCA
ATATATTCGTTAATCAAAAAAAAAAAAAAAAAA