>FCL-AA15 (FCL-AA15Q) /CSM/FCL/FCL-AA/FCL-AA15Q.Seq.d/
XXXXXXXXXXCCATTCATCTGTCCAATCGATTGTCGTCGTGGTCTCTACAAGAATATCGT
CTTATCTGGTGGTTCAACCATGTTTAAAGATTTTGGTAAACGTCTTCAACGTGATGTCAA
ACGTTCTGTCGATTACCGTATCAAACGTTCCGAAGAATTATCTGGTGGTAAAATTAAAGC
TGTCCCATTGGCCGTCAACGTTATCTCTCACAATATGCAACGTTATGCCGTATGGTTTGG
TGGTTCTATGTTGGCTTCAACTCCAGAGTTTTACAATGTCTGTCATACCAAAGCTCAATA
TGATGAAATCGGTCCATCCATTTGCAGATTTAACACTGTCATTGGTGGTATCAATTAAAT
AGGTTTTTCTATAAATAATCAAAAAAATATTTTTCCGATTGAAATAATTAATACTCTAAC
TTCATTATTAGTTTATTATTACCTATCAAAAA

---HSSVQSIVVVVSTRISSYLVVQPCLKILVNVFNVMSNVLSITVSNVPKNYLVVKLKL
SHWPSTLSLTICNVMPYGLVVLCWLQLQSFTMSVIPKLNMMKSVHPFADLTLSLVVSIK*
vfl*iikkiffrlk*lil*lhy*fiityqk

Frame A:
---HSSVQSIVVVVSTRISSYLVVQPCLKILVNVFNVMSNVLSITVSNVPKNYLVVKLKL
SHWPSTLSLTICNVMPYGLVVLCWLQLQSFTMSVIPKLNMMKSVHPFADLTLSLVVSIK*
vfl*iikkiffrlk*lil*lhy*fiityqk


Frame B:
---ihlsnrlsswslqeyrliwwfnhv*rfw*tsst*cqtfcrlpyqtfrriiww*n*sc
pigrqrylsqyatlcrmvwwfyvgfnsrvlqclsyqssi**nrsihlqi*hchwwyqlnr
ffyk*skkyfsd*nn*ysnfiislllpik


Frame C:
---ficpidcrrglyknivlsggstmfkdfgkrlqrdvkrsvdyrikrseelsggkikav
plavnvishnmqryavwfggsmlastpefynvchtkaqydeigpsicrfntviggin*ig
fsinnqknifpieiintltsllvyyylsk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA15 (FCL-AA15Q) /CSM/FCL/FCL-AA/FCL-AA15Q.Seq.d/                 835   0.0
FC-BI04 (FC-BI04Q) /CSM/FC/FC-BI/FC-BI04Q.Seq.d/                      803   0.0
VSF457 (VSF457Q) /CSM/VS/VSF4-C/VSF457Q.Seq.d/                        767   0.0
SFB660 (SFB660Q) /CSM/SF/SFB6-C/SFB660Q.Seq.d/                        751   0.0
AFI538 (AFI538Q) /CSM/AF/AFI5-B/AFI538Q.Seq.d/                        747   0.0
AFI845 (AFI845Q) /CSM/AF/AFI8-B/AFI845Q.Seq.d/                        743   0.0
VFD509 (VFD509Q) /CSM/VF/VFD5-A/VFD509Q.Seq.d/                        739   0.0
AFF125 (AFF125Q) /CSM/AF/AFF1-B/AFF125Q.Seq.d/                        720   0.0
AFH594 (AFH594Q) /CSM/AF/AFH5-D/AFH594Q.Seq.d/                        718   0.0
AFH109 (AFH109Q) /CSM/AF/AFH1-A/AFH109Q.Seq.d/                        718   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z46418|Z46418.1 Dictyostelium discoideum mRNA for actin-like protein.   718  0.0  2
AI976957|AI976957.1 EST271474 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAB85 5' end, mRNA sequence.    64  7e-15  2
AV997173|AV997173.1 Ciona intestinalis cDNA, clone:citb19m09, 5' end, single read.    58  8e-12  2
AV885348|AV885348.1 Ciona intestinalis cDNA, clone:rcitb19m09, 3' end, single read.    58  8e-12  2
AV965979|AV965979.1 Ciona intestinalis cDNA, clone:cilv21a10, 5' end, single read.    50  2e-09  2
BW196096|BW196096.1 Ciona intestinalis cDNA, clone:cicl038f18, 5' end, single read.    50  2e-09  2
AV862112|AV862112.1 Ciona intestinalis cDNA, clone:rcieg32c20, 3' end, single read.    50  2e-09  2
BW218081|BW218081.1 Ciona intestinalis cDNA, clone:cieg090b21, 5' end, single read.    50  2e-09  2
BW040290|BW040290.1 Ciona intestinalis cDNA, clone:cibd043b07, 5' end, single read.    50  2e-09  2
BW039288|BW039288.1 Ciona intestinalis cDNA, clone:cibd040c10, 5' end, single read.    50  2e-09  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY577012_1(AY577012|pid:none) Danio rerio clone RZ152A2C04 ARP3 ...   179   3e-44
BC064225_1(BC064225|pid:none) Xenopus tropicalis ARP3 actin-rela...   179   3e-44
AB292042_1(AB292042|pid:none) Rattus norvegicus Arp3 mRNA for ac...   177   7e-44
AB292043_1(AB292043|pid:none) Rattus norvegicus Arp3 mRNA for ac...   177   7e-44
(Q90WD0) RecName: Full=Actin-related protein 3; AltName: Full=Ac...   177   7e-44
AK300030_1(AK300030|pid:none) Homo sapiens cDNA FLJ51082 complet...   177   7e-44
(Q4V7C7) RecName: Full=Actin-related protein 3; AltName: Full=Ac...   177   7e-44
AK302152_1(AK302152|pid:none) Homo sapiens cDNA FLJ52434 complet...   177   7e-44
AY533216_1(AY533216|pid:none) Chinchilla lanigera actin-related ...   177   7e-44
DQ985463_1(DQ985463|pid:none) Suberites domuncula actin related ...   176   3e-43

 psg: 0.92  gvh: 0.49  alm: 0.32  top: 0.40  tms: 0.07  mit: 0.55  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FCL-AA15 is mit

>FCL-AA15Z.Seq
----------CCATTCATCTGTCCAATCGATTGTCGTCGTGGTCTCTACAAGAATATCGT
CTTATCTGGTGGTTCAACCATGTTTAAAGATTTTGGTAAACGTCTTCAACGTGATGTCAA
ACGTTCTGTCGATTACCGTATCAAACGTTCCGAAGAATTATCTGGTGGTAAAATTAAAGC
TGTCCCATTGGCCGTCAACGTTATCTCTCACAATATGCAACGTTATGCCGTATGGTTTGG
TGGTTCTATGTTGGCTTCAACTCCAGAGTTTTACAATGTCTGTCATACCAAAGCTCAATA
TGATGAAATCGGTCCATCCATTTGCAGATTTAACACTGTCATTGGTGGTATCAATTAAAT
AGGTTTTTCTATAAATAATCAAAAAAATATTTTTCCGATTGAAATAATTAATACTCTAAC
TTCATTATTAGTTTATTATTACCTATCAAAAA