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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA14
Library FCL
(Link to library)
Clone ID FCL-AA14
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16035-1
Original site URL
Representative seq. ID FCL-AA14P
(Link to Original site)
Representative DNA sequence 
>FCL-AA14 (FCL-AA14Q) /CSM/FCL/FCL-AA/FCL-AA14Q.Seq.d/
ATTTATATATACATTTTTTTTTTTTTCATCCCTTGAAATATTAATTTTCAATTGTATTTT
TATTTTTCATATCATACCATATTATATATATAATATATAATTTTTTTTTAAAAAATGTTT
GCCAACAGAGTTAGACAAGCACAAAAATTATATCAAAAAAGATTTTTCAGTTTAGGTAAT
AATTCAACAATCTCAAAACAACAATTCAAAAATTCAAGTAATAATAACAACAACAAAAAT
GGTGGTAATAAAAATGGATTTTATCAAAAAGCATTTNNNGCAACAACAGTCGCTTTAACA
ACTACACTTTTAACAGCCACTACATTATTAGATGATAATACAAATTCTGAAAAAGAAATC
CTTAAAAGTCAAAGACAAACTTTTGAAAAATATGCATCAACTACACTCGAAGGTGAAAGA
CAAATGACAGCAGAAGATTTTTTATCAGCATTAACAACATTGGAAAGTGATAAACAAAGT
GGTGAACATGAAATTTTAAAAGCAAGTTTAGATGCAGATAAATTTAAAGTATTATTTCAA
ATGGCAGATGTTGATCATACTGGATATATTAGTTTCGATGAATATGTAATGTTTGATGAG
TTAATGGCAAAACCAGAAGCAGAGTACTTTTTAGCATTCAAAATTATXXXXXXXXXXAAT
GAAACTATTCTCGCCAATGAAGATGGTAAATTAGGTCCAATGGATCTTTTATTGGCTGGT
GCTGTCGCTGGTATTCCAGCTGCAAGTTTGGTAACTCCAGCCGATGTCATTAAAACTAGA
CTTCAAGTAAAAGCAAACGCTGGTGAACAAACTTACACTGGTATTCGTGATTGTTTCCAA
AAGATTCTCAAAGAAGAAGGTCCACGTGCTCTCTTCAAGGGTGCCCTTGCTCGTGTTTTC
AGATCTTCCCCACAATTTGGTGTAACTTTAGTCTCCTATGAATTACTCCAAAAAGCTTTA
CTTCCAGACGCTGAATATAAACCACCAACAAATGCTCCAATCACTCAAAAAGATTTCGAC
GTAATTAGAGGTAATACAAATACTGTTCAAAGAGTTATCGATATGGAAAGTAAATTTGGT
ACTCTTCATCAAACTCGTGATAATAATAAATCATCAAATGGTGGTGAAAATAAAAATTAA
ATTTAAAAAAAAATAAAAAAATAAAATAAACAAATAATGAATAAATAAATAAATAAATAA
ATAAATA
sequence update 1996.12.25
Translated Amino Acid sequence 
iyiyiffffip*ninfqlyfyfsyhtilyi*yiiff*KMFANRVRQAQKLYQKRFFSLGN
NSTISKQQFKNSSNNNNNKNGGNKNGFYQKAFXATTVALTTTLLTATTLLDDNTNSEKEI
LKSQRQTFEKYASTTLEGERQMTAEDFLSALTTLESDKQSGEHEILKASLDADKFKVLFQ
MADVDHTGYISFDEYVMFDELMAKPEAEYFLAFKI---

---NETILANEDGKLGPMDLLLAGAVAGIPAASLVTPADVIKTRLQVKANAGEQTYTGIR
DCFQKILKEEGPRALFKGALARVFRSSPQFGVTLVSYELLQKALLPDAEYKPPTNAPITQ
KDFDVIRGNTNTVQRVIDMESKFGTLHQTRDNNKSSNGGENKN*i*kkikk*nkqimnk*
ink*in
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiyiffffip*ninfqlyfyfsyhtilyi*yiiff*KMFANRVRQAQKLYQKRFFSLGN
NSTISKQQFKNSSNNNNNKNGGNKNGFYQKAFXATTVALTTTLLTATTLLDDNTNSEKEI
LKSQRQTFEKYASTTLEGERQMTAEDFLSALTTLESDKQSGEHEILKASLDADKFKVLFQ
MADVDHTGYISFDEYVMFDELMAKPEAEYFLAFKI---

---NETILANEDGKLGPMDLLLAGAVAGIPAASLVTPADVIKTRLQVKANAGEQTYTGIR
DCFQKILKEEGPRALFKGALARVFRSSPQFGVTLVSYELLQKALLPDAEYKPPTNAPITQ
KDFDVIRGNTNTVQRVIDMESKFGTLHQTRDNNKSSNGGENKN*i*kkikk*nkqimnk*
ink*in

Frame B:
fiytffffssleilifncififhiipyyiyni*fffkkclpteldkhknyikkdfsv*vi
iqqsqnnnskiqviitttkmvvikmdfikkhxxqqqsl*qlhf*qplhy*miiqilkkks
lkvkdkllknmhqlhskvkdk*qqkifyqh*qhwkvinkvvnmkf*kqv*mqinlkyyfk
wqmliildilvsmnm*clms*wqnqkqstf*hskl---

---mklfspmkmvn*vqwifywlvlslvfqlqvw*lqpmslkldfk*kqtlvnkltlvfv
ivskrfskkkvhvlssrvpllvfsdlphnlv*l*spmnyskklyfqtlninhqqmlqslk
kist*leviqilfkelsiwkvnlvlfiklviiinhqmvvkikikfkkk*knkink**ink
*ink*i

Frame C:
lyihffffhplky*fsivflffisyhiiyiiynfflknvcqqs*tstkiiskkifqfr**
fnnlkttiqkfk***qqqkww**kwilsksixxnnsrfnnytfnshyiir**ykf*krnp
*ksktnf*kicinytrr*ktndsrrffisinnigk**tkw*t*nfkskfrcr*i*siisn
grc*sywiy*fr*icnv**vngktrsrvlfsiqny---

---*nysrq*rw*irsngsfigwccrwyssckfgnssrch*n*tsskskrw*tnlhwys*
lfpkdsqrrrstcslqgcpcscfqifptiwcnfsll*itpksftsrr*i*ttnkcsnhsk
rfrrn*r*ykycsksyrygk*iwysssns****iikww*k*klnlkknkkik*tnne*in
k*ink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA14 (FCL-AA14Q) /CSM/FCL/FCL-AA/FCL-AA14Q.Seq.d/                1687   0.0
VHH163 (VHH163Q) /CSM/VH/VHH1-C/VHH163Q.Seq.d/                        876   0.0
VHE113 (VHE113Q) /CSM/VH/VHE1-A/VHE113Q.Seq.d/                        872   0.0
VHN893 (VHN893Q) /CSM/VH/VHN8-D/VHN893Q.Seq.d/                        862   0.0
VFO789 (VFO789Q) /CSM/VF/VFO7-D/VFO789Q.Seq.d/                        819   0.0
VHL557 (VHL557Q) /CSM/VH/VHL5-C/VHL557Q.Seq.d/                        813   0.0
SSI462 (SSI462Q) /CSM/SS/SSI4-C/SSI462Q.Seq.d/                         46   0.001
VSA158 (VSA158Q) /CSM/VS/VSA1-C/VSA158Q.Seq.d/                         40   0.077
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                         40   0.077
SSH681 (SSH681Q) /CSM/SS/SSH6-D/SSH681Q.Seq.d/                         40   0.077
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    46  7e-06  8
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    42  0.001  5
AC068599|AC068599.5 Homo sapiens chromosome 2 clone RP11-549J11, complete sequence.    42  0.006  6
AC009562|AC009562.9 Homo sapiens chromosome 15, clone RP11-348B17, complete sequence.    44  0.009  2
AJ430679|AJ430679.1 Saccharomyces servazzii complete mitochondrial genome.    32  0.019  7
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12 section 5 of 9 of the complete sequence.    42  0.022  4
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          42  0.039  4
CC768826|CC768826.1 CH240_68I24.TJ CHORI-240 Bos taurus genomic clone CH240_68I24, genomic survey sequence.    50  0.063  1
AC114883|AC114883.3 Rattus norvegicus clone RP31-466K16 strain Brown Norway, WORKING DRAFT SEQUENCE, 6 ordered pieces.    46  0.066  5
AF362375|AF362375.2 Dictyostelium discoideum histidine kinase DhkE (dhkE) gene, complete cds.    46  0.071  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RB9) RecName: Full=Calcium-binding mitochondrial carrier pro...   289   1e-76
BC159167_1(BC159167|pid:none) Xenopus tropicalis solute carrier ...   156   2e-36
BC016571_1(BC016571|pid:none) Mus musculus solute carrier family...   151   5e-35
AK012670_1(AK012670|pid:none) Mus musculus 10, 11 days embryo wh...   151   5e-35
AC002540_1(AC002540|pid:none) Homo sapiens BAC clone GS1-25M2 fr...   150   6e-35
AK294629_1(AK294629|pid:none) Homo sapiens cDNA FLJ54671 complet...   150   6e-35
AJ720830_1(AJ720830|pid:none) Gallus gallus mRNA for hypothetica...   150   6e-35
(Q9UJS0) RecName: Full=Calcium-binding mitochondrial carrier pro...   150   6e-35
AK222864_1(AK222864|pid:none) Homo sapiens mRNA for solute carri...   150   6e-35
Y17571_1(Y17571|pid:none) Homo sapiens mRNA for mitochondrial ca...   150   1e-34
protein update 2009. 4.14
PSORT 

 psg: 0.48  gvh: 0.33  alm: 0.30  top: 0.80  tms: 0.07  mit: 0.53  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.10  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for FCL-AA14 is nuc
5' end seq. ID FCL-AA14F
5' end seq. 
>FCL-AA14F.Seq
ATTTATATATACATTTTTTTTTTTTTCATCCCTTGAAATATTAATTTTCAATTGTATTTT
TATTTTTCATATCATACCATATTATATATATAATATATAATTTTTTTTTAAAAAATGTTT
GCCAACAGAGTTAGACAAGCACAAAAATTATATCAAAAAAGATTTTTCAGTTTAGGTAAT
AATTCAACAATCTCAAAACAACAATTCAAAAATTCAAGTAATAATAACAACAACAAAAAT
GGTGGTAATAAAAATGGATTTTATCAAAAAGCATTTNNNGCAACAACAGTCGCTTTAACA
ACTACACTTTTAACAGCCACTACATTATTAGATGATAATACAAATTCTGAAAAAGAAATC
CTTAAAAGTCAAAGACAAACTTTTGAAAAATATGCATCAACTACACTCGAAGGTGAAAGA
CAAATGACAGCAGAAGATTTTTTATCAGCATTAACAACATTGGAAAGTGATAAACAAAGT
GGTGAACATGAAATTTTAAAAGCAAGTTTAGATGCAGATAAATTTAAAGTATTATTTCAA
ATGGCAGATGTTGATCATACTGGATATATTAGTTTCGATGAATATGTAATGTTTGATGAG
TTAATGGCAAAACCAGAAGCAGAGTACTTTTTAGCATTCAAAATTAT----------
Length of 5' end seq. 647
3' end seq. ID FCL-AA14Z
3' end seq. 
>FCL-AA14Z.Seq
----------AATGAAACTATTCTCGCCAATGAAGATGGTAAATTAGGTCCAATGGATCT
TTTATTGGCTGGTGCTGTCGCTGGTATTCCAGCTGCAAGTTTGGTAACTCCAGCCGATGT
CATTAAAACTAGACTTCAAGTAAAAGCAAACGCTGGTGAACAAACTTACACTGGTATTCG
TGATTGTTTCCAAAAGATTCTCAAAGAAGAAGGTCCACGTGCTCTCTTCAAGGGTGCCCT
TGCTCGTGTTTTCAGATCTTCCCCACAATTTGGTGTAACTTTAGTCTCCTATGAATTACT
CCAAAAAGCTTTACTTCCAGACGCTGAATATAAACCACCAACAAATGCTCCAATCACTCA
AAAAGATTTCGACGTAATTAGAGGTAATACAAATACTGTTCAAAGAGTTATCGATATGGA
AAGTAAATTTGGTACTCTTCATCAAACTCGTGATAATAATAAATCATCAAATGGTGGTGA
AAATAAAAATTAAATTTAAAAAAAAATAAAAAAATAAAATAAACAAATAATGAATAAATA
AATAAATAAATAAATAAATA
Length of 3' end seq. 550
Connected seq. ID FCL-AA14P
Connected seq. 
>FCL-AA14P.Seq
ATTTATATATACATTTTTTTTTTTTTCATCCCTTGAAATATTAATTTTCAATTGTATTTT
TATTTTTCATATCATACCATATTATATATATAATATATAATTTTTTTTTAAAAAATGTTT
GCCAACAGAGTTAGACAAGCACAAAAATTATATCAAAAAAGATTTTTCAGTTTAGGTAAT
AATTCAACAATCTCAAAACAACAATTCAAAAATTCAAGTAATAATAACAACAACAAAAAT
GGTGGTAATAAAAATGGATTTTATCAAAAAGCATTTNNNGCAACAACAGTCGCTTTAACA
ACTACACTTTTAACAGCCACTACATTATTAGATGATAATACAAATTCTGAAAAAGAAATC
CTTAAAAGTCAAAGACAAACTTTTGAAAAATATGCATCAACTACACTCGAAGGTGAAAGA
CAAATGACAGCAGAAGATTTTTTATCAGCATTAACAACATTGGAAAGTGATAAACAAAGT
GGTGAACATGAAATTTTAAAAGCAAGTTTAGATGCAGATAAATTTAAAGTATTATTTCAA
ATGGCAGATGTTGATCATACTGGATATATTAGTTTCGATGAATATGTAATGTTTGATGAG
TTAATGGCAAAACCAGAAGCAGAGTACTTTTTAGCATTCAAAATTAT----------AAT
GAAACTATTCTCGCCAATGAAGATGGTAAATTAGGTCCAATGGATCTTTTATTGGCTGGT
GCTGTCGCTGGTATTCCAGCTGCAAGTTTGGTAACTCCAGCCGATGTCATTAAAACTAGA
CTTCAAGTAAAAGCAAACGCTGGTGAACAAACTTACACTGGTATTCGTGATTGTTTCCAA
AAGATTCTCAAAGAAGAAGGTCCACGTGCTCTCTTCAAGGGTGCCCTTGCTCGTGTTTTC
AGATCTTCCCCACAATTTGGTGTAACTTTAGTCTCCTATGAATTACTCCAAAAAGCTTTA
CTTCCAGACGCTGAATATAAACCACCAACAAATGCTCCAATCACTCAAAAAGATTTCGAC
GTAATTAGAGGTAATACAAATACTGTTCAAAGAGTTATCGATATGGAAAGTAAATTTGGT
ACTCTTCATCAAACTCGTGATAATAATAAATCATCAAATGGTGGTGAAAATAAAAATTAA
ATTTAAAAAAAAATAAAAAAATAAAATAAACAAATAATGAATAAATAAATAAATAAATAA
ATAAATA
Length of connected seq. 1197
Full length Seq ID -
Full length Seq. -
Length of full length seq. -