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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA12
Library FCL
(Link to library)
Clone ID FCL-AA12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16034-1
Original site URL
Representative seq. ID FCL-AA12P
(Link to Original site)
Representative DNA sequence 
>FCL-AA12 (FCL-AA12Q) /CSM/FCL/FCL-AA/FCL-AA12Q.Seq.d/
ATCAAATGTTTATTCAACAACAACCATCAGATTCAATTGTTTGTAATCGTTATATTCATC
CAGCCATTGTTGTTTTGGTTGACCAAGAGGTAATTAGTCAAACCTCTGGTTATTTAATTG
TAAATGCTTCATTGGTTCAACACAATTCAAAGAATGTAAACACTAACAACAGCAAAAACC
AATTACTCCAAGGTGTTAAAAGTGTTCTCGTTGAAAAGAATGGTGTTGTTATTTTCAACA
AGTTGAAGCCAAGTGAACTCGCCGCCAAACTTCCTGGTCAATTATTCAGCATTTGTTTTA
CTCTTTCTGATATCTCATCAGTTGATAAACAAAGTCATGTCATTTCTCAAGTCACTACCT
CACCATTTTACATTGTTTCTAAACCAAACAAAAGAAAGAGTGACGAAATTGATTCATCAG
ATGAACCATCATCACCATTGACTCAAAAAGTTTGTTCACCACCATCATCACCATCTCTTA
TGGTTTCTCCATCCAACAGTGCCAACAAGATTGAAGATAATTCAGTTATTTCAACTGATT
TAAATTATATAGATATCACTGATCTATTAATTTTACCACAAAAAGAAGCTGCTTCAAAAT
TGGGTATCTCTGAGTCAATGTTGTGTAAAXXXXXXXXXXCTCTCCTATCCAAGCTTTGCG
TAGACGTTGATTCTAATGGAAAGAACAGGTTAATGGATAATCGATTTTTCTGCTTTCTGC
CATATAAGTTTAAGCTCTTCAAAGTAATAATTATACATATACGTATATACTAGTATAATT
ACCAATTTTATATTTTATATTTTTGTGTTTTTTCAATTTTATATTTGTTTTGTTCTCTCA
CCCTCACATTTATTATGTTGGAATTAATTTGGTTTTTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGTTCAAGTATAAAACAATACCAACACACTTTTTATTATACTTATATCCACAC
ACAAACTTTTTGTTTTAATTTTTCAATTTAAAAAATCAATCAATTTCATCATCATTATTT
GTCACATTTTTATTTGAATTCTATTTGATTATAGATTCGGTTTTTGCTTTGTTTGCTCAA
TTCCACATCACTATTACACACACTCACACACAATGTTATCATTTGTTTCATTAAAATAAT
TTTATTGATCCTTCGCCATTCAACAATTTCCACCAAAAG
sequence update 1996.12.25
Translated Amino Acid sequence 
QMFIQQQPSDSIVCNRYIHPAIVVLVDQEVISQTSGYLIVNASLVQHNSKNVNTNNSKNQ
LLQGVKSVLVEKNGVVIFNKLKPSELAAKLPGQLFSICFTLSDISSVDKQSHVISQVTTS
PFYIVSKPNKRKSDEIDSSDEPSSPLTQKVCSPPSSPSLMVSPSNSANKIEDNSVISTDL
NYIDITDLLILPQKEAASKLGISESMLCK---

---LLSKLCVDVDSNGKNRLMDNRFFCFLPYKFKLFKVIIIHIRIY*ynyqfyilyfcvf
silylfcsltltfimleliwffkkkkkkkkkkvqv*nntntlfiilisthklfvlifqfk
ksinfiiiichifi*ilfdyrfgfcfvcsiphhyythshtmlsfvslk*fy*sfaiqqfp
pk
Translated Amino Acid sequence (All Frames) 
Frame A:
ikclfnnnhqiqlfvivifiqpllfwltkr*lvkplvi*l*mlhwfntiqrm*tlttakt
nyskvlkvfslkrmvllfsts*sqvnsppnflvnysafvllflishqlinkvmsflkslp
hhftlflnqtkervtklihqmnhhhh*lkkfvhhhhhhllwflhptvptrlkiiqlfqli
*ii*isliy*fyhkkkllqnwvslsqccv---

---lsypsfa*tlilmertg*wiidfsafchislsssk**lyiyvytsiitnfifyifvf
fqfyicfvlspshllcwn*fgfskkkkkkkkkkfkyktipthfllylyphtnflf*ffnl
knqsissslfvtflfefyliidsvfalfaqfhitiththtqcyhlfh*nnfidpspfnnf
hqk

Frame B:
snvystttirfncl*slyssshccfg*prgn*snlwlfnckcfigstqfkeckh*qqqkp
itprc*kcsr*kewccyfqqveak*trrqtswsiiqhlfysf*ylis**tkschfsshyl
tilhcf*tkqkke*rn*fir*tiitidskslfttiitisygfsiqqcqqd*r*fsyfn*f
klyryh*sinfttkrscfkigyl*vnvv*---

---spiqalrrr*f*wkeqvng*sifllsai*v*alqsnnytytyilv*lpilyfiflcf
fnfifvlfshphiyyvginlvfqkkkkkkkkksssikqyqhtfyytyihtqtfcfnfsi*
kinqfhhhylshfylnsi*l*irfllcllnstsllhtlthnviicfikiillilrhstis
tk

Frame C:
QMFIQQQPSDSIVCNRYIHPAIVVLVDQEVISQTSGYLIVNASLVQHNSKNVNTNNSKNQ
LLQGVKSVLVEKNGVVIFNKLKPSELAAKLPGQLFSICFTLSDISSVDKQSHVISQVTTS
PFYIVSKPNKRKSDEIDSSDEPSSPLTQKVCSPPSSPSLMVSPSNSANKIEDNSVISTDL
NYIDITDLLILPQKEAASKLGISESMLCK---

---LLSKLCVDVDSNGKNRLMDNRFFCFLPYKFKLFKVIIIHIRIY*ynyqfyilyfcvf
silylfcsltltfimleliwffkkkkkkkkkkvqv*nntntlfiilisthklfvlifqfk
ksinfiiiichifi*ilfdyrfgfcfvcsiphhyythshtmlsfvslk*fy*sfaiqqfp
pk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA12 (FCL-AA12Q) /CSM/FCL/FCL-AA/FCL-AA12Q.Seq.d/                1495   0.0
SLA628 (SLA628Q) /CSM/SL/SLA6-B/SLA628Q.Seq.d/                        583   e-165
CHM241 (CHM241Q) /CSM/CH/CHM2-B/CHM241Q.Seq.d/                        147   4e-34
SLJ139 (SLJ139Q) /CSM/SL/SLJ1-B/SLJ139Q.Seq.d/                        133   7e-30
VSK381 (VSK381Q) /CSM/VS/VSK3-D/VSK381Q.Seq.d/                         42   0.019
AFM171 (AFM171Q) /CSM/AF/AFM1-C/AFM171Q.Seq.d/                         42   0.019
VHO217 (VHO217Q) /CSM/VH/VHO2-A/VHO217Q.Seq.d/                         40   0.075
SSE372 (SSE372Q) /CSM/SS/SSE3-C/SSE372Q.Seq.d/                         40   0.075
VHJ237 (VHJ237Q) /CSM/VH/VHJ2-B/VHJ237Q.Seq.d/                         38   0.30
VFO752 (VFO752Q) /CSM/VF/VFO7-C/VFO752Q.Seq.d/                         38   0.30
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM648461|BM648461.1 17000687326059 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449654945 5', mRNA sequence.    50  0.062  1
BM607983|BM607983.1 17000687085850 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449712979 5', mRNA sequence.    50  0.062  1
AX647633|AX647633.1 Sequence 1825 from Patent EP1270724.          40  0.14  3
AC093405|AC093405.2 Lemur catta, WORKING DRAFT SEQUENCE, 7 ordered pieces.    38  0.18  6
BX470146|BX470146.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-126D11.    48  0.24  1
BF810903|BF810903.1 CM2-CI0180-181100-531-g04 CI0180 Homo sapiens cDNA, mRNA sequence.    40  0.51  2
AC016775|AC016775.5 Homo sapiens chromosome 11 clone RP11-573M3, WORKING DRAFT SEQUENCE, 22 unordered pieces.    40  0.67  6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38  0.70  8
AC011811|AC011811.42 Homo sapiens chromosome unknown clone b250a12, complete sequence.    40  0.73  3
S65019|S65019.1 mucin [rats, Sprague-Dawley, sulfur-dioxide-treated tracheal epithelium, mRNA Partial, 390 nt].    40  0.88  2
dna update 2003. 7.17
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 1,524,464,949
protein update 2009. 4.14
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for FCL-AA12 is cyt
5' end seq. ID FCL-AA12F
5' end seq. 
>FCL-AA12F.Seq
ATCAAATGTTTATTCAACAACAACCATCAGATTCAATTGTTTGTAATCGTTATATTCATC
CAGCCATTGTTGTTTTGGTTGACCAAGAGGTAATTAGTCAAACCTCTGGTTATTTAATTG
TAAATGCTTCATTGGTTCAACACAATTCAAAGAATGTAAACACTAACAACAGCAAAAACC
AATTACTCCAAGGTGTTAAAAGTGTTCTCGTTGAAAAGAATGGTGTTGTTATTTTCAACA
AGTTGAAGCCAAGTGAACTCGCCGCCAAACTTCCTGGTCAATTATTCAGCATTTGTTTTA
CTCTTTCTGATATCTCATCAGTTGATAAACAAAGTCATGTCATTTCTCAAGTCACTACCT
CACCATTTTACATTGTTTCTAAACCAAACAAAAGAAAGAGTGACGAAATTGATTCATCAG
ATGAACCATCATCACCATTGACTCAAAAAGTTTGTTCACCACCATCATCACCATCTCTTA
TGGTTTCTCCATCCAACAGTGCCAACAAGATTGAAGATAATTCAGTTATTTCAACTGATT
TAAATTATATAGATATCACTGATCTATTAATTTTACCACAAAAAGAAGCTGCTTCAAAAT
TGGGTATCTCTGAGTCAATGTTGTGTAAA----------
Length of 5' end seq. 629
3' end seq. ID FCL-AA12Z
3' end seq. 
>FCL-AA12Z.Seq
----------CTCTCCTATCCAAGCTTTGCGTAGACGTTGATTCTAATGGAAAGAACAGG
TTAATGGATAATCGATTTTTCTGCTTTCTGCCATATAAGTTTAAGCTCTTCAAAGTAATA
ATTATACATATACGTATATACTAGTATAATTACCAATTTTATATTTTATATTTTTGTGTT
TTTTCAATTTTATATTTGTTTTGTTCTCTCACCCTCACATTTATTATGTTGGAATTAATT
TGGTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCAAGTATAAAACAATACC
AACACACTTTTTATTATACTTATATCCACACACAAACTTTTTGTTTTAATTTTTCAATTT
AAAAAATCAATCAATTTCATCATCATTATTTGTCACATTTTTATTTGAATTCTATTTGAT
TATAGATTCGGTTTTTGCTTTGTTTGCTCAATTCCACATCACTATTACACACACTCACAC
ACAATGTTATCATTTGTTTCATTAAAATAATTTTATTGATCCTTCGCCATTCAACAATTT
CCACCAAAAG
Length of 3' end seq. 540
Connected seq. ID FCL-AA12P
Connected seq. 
>FCL-AA12P.Seq
ATCAAATGTTTATTCAACAACAACCATCAGATTCAATTGTTTGTAATCGTTATATTCATC
CAGCCATTGTTGTTTTGGTTGACCAAGAGGTAATTAGTCAAACCTCTGGTTATTTAATTG
TAAATGCTTCATTGGTTCAACACAATTCAAAGAATGTAAACACTAACAACAGCAAAAACC
AATTACTCCAAGGTGTTAAAAGTGTTCTCGTTGAAAAGAATGGTGTTGTTATTTTCAACA
AGTTGAAGCCAAGTGAACTCGCCGCCAAACTTCCTGGTCAATTATTCAGCATTTGTTTTA
CTCTTTCTGATATCTCATCAGTTGATAAACAAAGTCATGTCATTTCTCAAGTCACTACCT
CACCATTTTACATTGTTTCTAAACCAAACAAAAGAAAGAGTGACGAAATTGATTCATCAG
ATGAACCATCATCACCATTGACTCAAAAAGTTTGTTCACCACCATCATCACCATCTCTTA
TGGTTTCTCCATCCAACAGTGCCAACAAGATTGAAGATAATTCAGTTATTTCAACTGATT
TAAATTATATAGATATCACTGATCTATTAATTTTACCACAAAAAGAAGCTGCTTCAAAAT
TGGGTATCTCTGAGTCAATGTTGTGTAAA----------CTCTCCTATCCAAGCTTTGCG
TAGACGTTGATTCTAATGGAAAGAACAGGTTAATGGATAATCGATTTTTCTGCTTTCTGC
CATATAAGTTTAAGCTCTTCAAAGTAATAATTATACATATACGTATATACTAGTATAATT
ACCAATTTTATATTTTATATTTTTGTGTTTTTTCAATTTTATATTTGTTTTGTTCTCTCA
CCCTCACATTTATTATGTTGGAATTAATTTGGTTTTTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGTTCAAGTATAAAACAATACCAACACACTTTTTATTATACTTATATCCACAC
ACAAACTTTTTGTTTTAATTTTTCAATTTAAAAAATCAATCAATTTCATCATCATTATTT
GTCACATTTTTATTTGAATTCTATTTGATTATAGATTCGGTTTTTGCTTTGTTTGCTCAA
TTCCACATCACTATTACACACACTCACACACAATGTTATCATTTGTTTCATTAAAATAAT
TTTATTGATCCTTCGCCATTCAACAATTTCCACCAAAAG
Length of connected seq. 1169
Full length Seq ID -
Full length Seq. -
Length of full length seq. -