FCL-AA09
Library FCL
(Link to library)
Clone ID FCL-AA09
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16453-1
Original site URL
Representative seq. ID FCL-AA09F
(Link to Original site)
Representative DNA sequence
>FCL-AA09 (FCL-AA09Q) /CSM/FCL/FCL-AA/FCL-AA09Q.Seq.d/
GACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGATGACCAACTCATGAAAAATGAG
TTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGACAATATGGAGCTCCCAAAGGAT
CTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCCATCAGCCATCCAACAAAGAGCT
ATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCAAGCTCAATCTGGTACTGGTAAA
ACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGATATTTCAGTCCTCAAATGTCAA
GCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACAAATTCAAAAGGTTGTTTTAGCT
TTAGGTGAATATTTACACATTAAATCATACGCATGGATTGGTGGTACTAAGATTACTGAT
GATATTCAAGCCCTCCAAAGTGGTGTACACGTAGTTGTCGGTACCCCAGGTCGTGTCTTT
GAAATXXXXXXXXXXCGTTTAATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAA
TATCCTTTGTTATTATTAATAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
dksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKPSAIQQRA
IIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQIQKVVLA
LGEYLHIKSYAWIGGTKITDDIQALQSGVHVVVGTPGRVFE---

---RLIKKKKKKKFKKKKYPLLLLIKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
dksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKPSAIQQRA
IIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQIQKVVLA
LGEYLHIKSYAWIGGTKITDDIQALQSGVHVVVGTPGRVFE---

---RLIKKKKKKKFKKKKYPLLLLIKKKKKKK

Frame B:
tkvnktcpqvikmtns*kmsskvpttklsihstiwssqris*evstpmvlkshqpsnkel
sfhsqkvlillpklnlvlvkllpsplvsylelifqssnvklsslpqlvnllnkfkrlf*l
*vniytlnhthglvvlrllmifkpskvvyt*lsvpqvvslk---

---v**kkkkkknlkkknilcyy**kkkkkk

Frame C:
qk*ikhvrk**r*pthek*vrkylrqncrfirqygapkgslkrylllwf*kaishptksy
hstlkrf*yycpssiwyw*ncylhrwyli*n*yfspqmssshhcpns*tcstnskgcfsf
r*ifth*iirmdwwy*dy**yssppkwctrscryprscl*n---

---fnkkkkkkki*kkkisfviinkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA09 (FCL-AA09Q) /CSM/FCL/FCL-AA/FCL-AA09Q.Seq.d/ 961 0.0
VFO234 (VFO234Q) /CSM/VF/VFO2-B/VFO234Q.Seq.d/ 954 0.0
VFN391 (VFN391Q) /CSM/VF/VFN3-D/VFN391Q.Seq.d/ 954 0.0
VFM521 (VFM521Q) /CSM/VF/VFM5-A/VFM521Q.Seq.d/ 954 0.0
VFL244 (VFL244Q) /CSM/VF/VFL2-B/VFL244Q.Seq.d/ 954 0.0
VFK524 (VFK524Q) /CSM/VF/VFK5-A/VFK524Q.Seq.d/ 954 0.0
VFI417 (VFI417Q) /CSM/VF/VFI4-A/VFI417Q.Seq.d/ 954 0.0
VFH169 (VFH169Q) /CSM/VF/VFH1-C/VFH169Q.Seq.d/ 954 0.0
VFD768 (VFD768Q) /CSM/VF/VFD7-C/VFD768Q.Seq.d/ 954 0.0
VFC832 (VFC832Q) /CSM/VF/VFC8-B/VFC832Q.Seq.d/ 954 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds. 920 0.0 1
AU010539|AU010539.1 Schizosaccharomyces pombe cDNA, clone spc10024. 66 7e-26 3
AU011976|AU011976.1 Schizosaccharomyces pombe cDNA, clone spc06170. 66 1e-25 3
AU011946|AU011946.1 Schizosaccharomyces pombe cDNA, clone spc06139. 66 2e-25 3
AU009453|AU009453.1 Schizosaccharomyces pombe cDNA, clone spc04934. 66 2e-25 3
CB367287|CB367287.1 E830 early-oocyst library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone E830 similar to Plasmodium berghei RNA helicase-1, mRNA sequence. 82 9e-25 2
X80796|X80796.1 S.pombe eIF-4A mRNA for translation initiation factor. 66 1e-24 3
L40627|L40627.1 Schizosaccharomyces pombe cell cycle control protein eIF-4A (tif1) mRNA, complete cds. 66 1e-24 3
AU009276|AU009276.1 Schizosaccharomyces pombe cDNA, clone spc04705. 66 8e-24 3
AU009275|AU009275.1 Schizosaccharomyces pombe cDNA, clone spc04703. 66 8e-24 3
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m... 299 4e-80
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 201 9e-51
(Q9CAI7) RecName: Full=Eukaryotic initiation factor 4A-3; ... 201 9e-51
(A4QVP2) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 199 6e-50
(A7EGL7) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 199 6e-50
(A6RJ45) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 199 6e-50
(P41382) RecName: Full=Eukaryotic initiation factor 4A-10; ... 197 2e-49
(Q40466) RecName: Full=Eukaryotic initiation factor 4A-13; ... 197 2e-49
DQ150250_1(DQ150250|pid:none) Bombyx mori translation initiation... 197 2e-49
S52018(S52018;S44928)translation initiation factor eIF-4A.11 - c... 197 2e-49
protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.28 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.64 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for FCL-AA09 is nuc

5' end seq. ID FCL-AA09F
5' end seq.
>FCL-AA09F.Seq
GACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGATGACCAACTCATGAAAAATGAG
TTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGACAATATGGAGCTCCCAAAGGAT
CTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCCATCAGCCATCCAACAAAGAGCT
ATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCAAGCTCAATCTGGTACTGGTAAA
ACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGATATTTCAGTCCTCAAATGTCAA
GCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACAAATTCAAAAGGTTGTTTTAGCT
TTAGGTGAATATTTACACATTAAATCATACGCATGGATTGGTGGTACTAAGATTACTGAT
GATATTCAAGCCCTCCAAAGTGGTGTACACGTAGTTGTCGGTACCCCAGGTCGTGTCTTT
GAAAT----------
Length of 5' end seq. 485
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -