FCL-AA08
Library FCL
(Link to library)
Clone ID FCL-AA08
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16200-1
Original site URL
Representative seq. ID FCL-AA08Z
(Link to Original site)
Representative DNA sequence
>FCL-AA08 (FCL-AA08Q) /CSM/FCL/FCL-AA/FCL-AA08Q.Seq.d/
XXXXXXXXXXTCGAAGCCAAAGGTCGTCTCGAAGAAGAATTCCATCGCTCGTACCAACTC
TGATCGTTCAAGAAAGAGACTCGAAGCTGAAATTGATGCCCTCACTGCTACAAGTTGATG
CTGAACAAAAAGCCAAGAATCAACAAATCAAAGAAAACAAGAAGATCGAAACCGAACTCA
AAGAATACAGAAAGAAATTCGGCGAATCAGAAAAGACCAAGACCAAAGAATTCCTCGTTG
TCGAAAAACTCGAAACAGATTACAAGAGAGCCAAGAAAGAAGCTGCTGATGAACAACAAC
AACGTCTTACTGTTGAAAACGATCTCCGTAAACACCTCAGTGAAATCTCATTACTCAAAG
ATGCCATTGATAAGTTACAACGTGATCACGATAAGACCAAACGTGAATTGGAAACAGAAA
CTGCCAGCAAAATCGAAATGCAAAGAAAGATGGCCGATTTCTTTGGTGGTTTCAAAGCTT
AAATCAATTTGATTTCTTCTTAATTCAATGCTAAAAAAAAAAATATTATAAAAAAAAAAA
CACACACAACAAATAAATTAATAAATACCATTTATTAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence
---RSQRSSRRRIPSLVPTLIVQERDSKLKLMPSLLQVDAEQKAKNQQIKENKKIETELK
EYRKKFGESEKTKTKEFLVVEKLETDYKRAKKEAADEQQQRLTVENDLRKHLSEISLLKD
AIDKLQRDHDKTKRELETETASKIEMQRKMADFFGGFKA*inliss*fnakkkniikkkt
httnklintiy*kk


Translated Amino Acid sequence (All Frames)
Frame A:
---RSQRSSRRRIPSLVPTLIVQERDSKLKLMPSLLQVDAEQKAKNQQIKENKKIETELK
EYRKKFGESEKTKTKEFLVVEKLETDYKRAKKEAADEQQQRLTVENDLRKHLSEISLLKD
AIDKLQRDHDKTKRELETETASKIEMQRKMADFFGGFKA*inliss*fnakkkniikkkt
httnklintiy*kk


Frame B:
---eakgrleeefhrsyql*sfkketrs*n*cphcyklmlnkkprinkskktrrskpnsk
nternsanqkrprpknsslsknskqitreprkkllmnnnnvlllktisvntsvkshyskm
plisynvitirpnvnwkqklpakskckerwpislvvsklksi*fllnsmlkkkil*kkkh
tqqin**ipfikk


Frame C:
---kpkvvskknsiartnsdrsrkrleaeidaltats*c*tksqestnqrkqedrnrtqr
iqkeirrirkdqdqriprcrktrnrlqesqersc**ttttsyc*krsp*tpq*nlitqrc
h**vtt*sr*dqt*ignrncqqnrnakkdgrflwwfqslnqfdffliqc*kkkyykkknt
hnk*inkyhllkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA08 (FCL-AA08Q) /CSM/FCL/FCL-AA/FCL-AA08Q.Seq.d/ 995 0.0
SLF203 (SLF203Q) /CSM/SL/SLF2-A/SLF203Q.Seq.d/ 963 0.0
SLC646 (SLC646Q) /CSM/SL/SLC6-B/SLC646Q.Seq.d/ 963 0.0
SLC107 (SLC107Q) /CSM/SL/SLC1-A/SLC107Q.Seq.d/ 963 0.0
SLE377 (SLE377Q) /CSM/SL/SLE3-D/SLE377Q.Seq.d/ 948 0.0
VHE443 (VHE443Q) /CSM/VH/VHE4-B/VHE443Q.Seq.d/ 908 0.0
VHJ859 (VHJ859Q) /CSM/VH/VHJ8-C/VHJ859Q.Seq.d/ 902 0.0
SLH805 (SLH805Q) /CSM/SL/SLH8-A/SLH805Q.Seq.d/ 894 0.0
VHL852 (VHL852Q) /CSM/VH/VHL8-C/VHL852Q.Seq.d/ 872 0.0
VHE677 (VHE677Q) /CSM/VH/VHE6-D/VHE677Q.Seq.d/ 852 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M14628|M14628.1 D.discoideum myosin heavy chain gene, complete cds. 797 0.0 4
AL928625|AL928625.4 Mouse DNA sequence from clone RP24-528P17 on chromosome 4. 50 0.030 1
AC102046|AC102046.2 Mus musculus clone RP23-354I16, WORKING DRAFT SEQUENCE, 14 unordered pieces. 50 0.030 1
AQ979186|AQ979186.1 RPCI-23-294P17.TJ RPCI-23 Mus musculus genomic clone RPCI-23-294P17, genomic survey sequence. 50 0.030 1
AL400389|AL400389.1 T7 end of clone AS0AA021D07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 42 0.038 2
AC118232|AC118232.6 Mus musculus clone RP23-462C3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 0.32 4
BI503057|BI503057.1 BB170006A20B12 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170006A20B12 5', mRNA sequence. 46 0.47 1
AC106629|AC106629.4 Rattus norvegicus clone CH230-218O2, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 0.47 1
BI505133|BI505133.1 BB170017A10F09 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170017A10F09 5', mRNA sequence. 46 0.47 1
AL433069|AL433069.1 T3 end of clone BB0AA014B02 of library BB0AA from strain CBS 4732 of Pichia angusta. 42 0.53 2
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P08799) RecName: Full=Myosin-2 heavy chain; AltName: Full=Myosi... 240 2e-62
A26655(A26655;A24728;S00250) myosin heavy chain [similarity] - s... 240 2e-62
AF335500_1(AF335500|pid:none) Physarum polycephalum major plasmo... 50 1e-05
AJ248284_61(AJ248284|pid:none) Pyrococcus abyssi complete genome... 51 3e-05
DQ411847_1(DQ411847|pid:none) Physarum polycephalum rad50 mRNA, ... 50 3e-05
AM920436_118(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 50 6e-05
A59292(A59292) probable type II myosin heavy chain - slime mold ... 45 9e-05
AE013599_4246(AE013599|pid:none) Drosophila melanogaster chromos... 49 1e-04
U35816_4(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 49 1e-04
AE013599_4247(AE013599|pid:none) Drosophila melanogaster chromos... 49 1e-04
protein update 2009. 4.14
PSORT

psg: 0.92 gvh: 0.51 alm: 0.56 top: 0.40 tms: 0.00 mit: 0.60 mip: 0.03
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: mitochondrial
24.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for FCL-AA08 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FCL-AA08Z
3' end seq.
>FCL-AA08Z.Seq
----------TCGAAGCCAAAGGTCGTCTCGAAGAAGAATTCCATCGCTCGTACCAACTC
TGATCGTTCAAGAAAGAGACTCGAAGCTGAAATTGATGCCCTCACTGCTACAAGTTGATG
CTGAACAAAAAGCCAAGAATCAACAAATCAAAGAAAACAAGAAGATCGAAACCGAACTCA
AAGAATACAGAAAGAAATTCGGCGAATCAGAAAAGACCAAGACCAAAGAATTCCTCGTTG
TCGAAAAACTCGAAACAGATTACAAGAGAGCCAAGAAAGAAGCTGCTGATGAACAACAAC
AACGTCTTACTGTTGAAAACGATCTCCGTAAACACCTCAGTGAAATCTCATTACTCAAAG
ATGCCATTGATAAGTTACAACGTGATCACGATAAGACCAAACGTGAATTGGAAACAGAAA
CTGCCAGCAAAATCGAAATGCAAAGAAAGATGGCCGATTTCTTTGGTGGTTTCAAAGCTT
AAATCAATTTGATTTCTTCTTAATTCAATGCTAAAAAAAAAAATATTATAAAAAAAAAAA
CACACACAACAAATAAATTAATAAATACCATTTATTAAAAAAAA
Length of 3' end seq. 574
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -