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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA07
Library FCL
(Link to library)
Clone ID FCL-AA07
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14973-1
Original site URL
Representative seq. ID FCL-AA07P
(Link to Original site)
Representative DNA sequence 
>FCL-AA07 (FCL-AA07Q) /CSM/FCL/FCL-AA/FCL-AA07Q.Seq.d/
CAAAATAAAAAATGTTATCAAATTTTTTAAAAGTCAACAGTAAAGCACTAGGACATATAA
GAACTTTTGCCTCAAAGAGTGGTGAAATTAAACACAATTTTAAAAAAGCCGATACATACT
TATGTGATGGTCCATCTGACTCAACTGTTACCAACAAAGATGAACTCATTTCATTCTTCA
CTGAAATGTCAAGATTTAGAAGACTCGAAACTGTTTGTGATGGTTTATACAAAAAAAAAT
TAATTAGAGGTTTCTGTCATTTATACACTGGTCAAGAAGCTGTTTGTGCAGGTTTAGAAA
GTGCAATTACTAAAGATGATCATATTATTACAGCATACAGAGATCACACTTATATGTTAT
CAAGAGGAGCAACACCAGAAGAAATTTTTGCAGAATTATTAATGAAAGAAACTGGTTGTT
CAAAGGGTAAAGGTGGTTCAATGCATATGTTTACAAAGAATTTCTATGGTGGTAATGGTA
TTGTTGGTGCTCAATGTCCACTTGGTGCTGGTATTGCCTTTTGCACAXXXXXXXXXXATG
GAAAAAGCCTCTGAAAAAGCTATCGCTGCTCCATTACCACAAGCTCGTGAACTCTTTACC
AACGTTTACCTCCAAGAAGTTCCNGTANGAGGTGTTGAATTTGTTAACAGTTTCAAACCA
TAAATTAATATTAACTTTTTTTACTTATTAAAAAAAAAAGTTTTAATTTTTAAAAAAAAA
AAAAAAATAAAAAAATAAAAAAAAAAAAATATATAAAAATTTTAATTAAAATAAAAAAAA
AAAAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence 
k*KMLSNFLKVNSKALGHIRTFASKSGEIKHNFKKADTYLCDGPSDSTVTNKDELISFFT
EMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAGLESAITKDDHIITAYRDHTYMLS
RGATPEEIFAELLMKETGCSKGKGGSMHMFTKNFYGGNGIVGAQCPLGAGIAFCT---

---WKKPLKKLSLLHYHKLVNSLPTFTSKKFXXEVLNLLTVSNHKLILTFFTY*kkkf*f
lkkkkk*knkkkkiyknfn*nkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qnkkcyqif*kstvkh*di*ellpqrvvklntilkkpihtyvmvhltqllptkmnsfhss
lkcqdledsklfvmvytkkn*levsviytlvkklfvqv*kvqllkmiillqhteitlicy
qeeqhqkkflqny**kklvvqrvkvvqciclqrismvvmvllvlnvhlvlvlpfa---

---mekasekaiaaplpqarelftnvylqevpvxgvefvnsfkp*ininffyllkkkvli
fkkkkkikk*kkkni*kf*lk*kkkkk

Frame B:
kiknvikffksqq*strtyknfclkew*n*tqf*ksryilm*wsi*lncyqqr*thfilh
*nvki*ktrncl*wfiqkkin*rflsfihwsrsclcrfrkcny*r*syyysiqrshlyvi
krsntrrnfcriinernwlfkg*rwfnayvykeflww*wycwcsmstwcwycllh---

---WKKPLKKLSLLHYHKLVNSLPTFTSKKFXXEVLNLLTVSNHKLILTFFTY*kkkf*f
lkkkkk*knkkkkiyknfn*nkkkkkk

Frame C:
k*KMLSNFLKVNSKALGHIRTFASKSGEIKHNFKKADTYLCDGPSDSTVTNKDELISFFT
EMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAGLESAITKDDHIITAYRDHTYMLS
RGATPEEIFAELLMKETGCSKGKGGSMHMFTKNFYGGNGIVGAQCPLGAGIAFCT---

---gksl*ksyrcsittss*tlyqrlpprssxxrc*ic*qfqtin*y*lfllikkksfnf
*kkkknkkikkkkyikilikikkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA07 (FCL-AA07Q) /CSM/FCL/FCL-AA/FCL-AA07Q.Seq.d/                1213   0.0
VHC605 (VHC605Q) /CSM/VH/VHC6-A/VHC605Q.Seq.d/                        979   0.0
VFM688 (VFM688Q) /CSM/VF/VFM6-D/VFM688Q.Seq.d/                        979   0.0
VFM660 (VFM660Q) /CSM/VF/VFM6-C/VFM660Q.Seq.d/                        979   0.0
VFL810 (VFL810Q) /CSM/VF/VFL8-A/VFL810Q.Seq.d/                        979   0.0
VFL294 (VFL294Q) /CSM/VF/VFL2-D/VFL294Q.Seq.d/                        979   0.0
VFI108 (VFI108Q) /CSM/VF/VFI1-A/VFI108Q.Seq.d/                        979   0.0
VFG594 (VFG594Q) /CSM/VF/VFG5-D/VFG594Q.Seq.d/                        979   0.0
VFG550 (VFG550Q) /CSM/VF/VFG5-C/VFG550Q.Seq.d/                        979   0.0
VFC725 (VFC725Q) /CSM/VF/VFC7-B/VFC725Q.Seq.d/                        979   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI514833|BI514833.1 BB160016B10B04.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160016B10B04 5', mRNA sequence.    56  1e-10  3
BI394876|S23506 pyruvate dehydrogenase, mRNA sequence.    70  1e-09  2
BU213525|BU213525.1 603756406F1 CSEQCHN04 Gallus gallus cDNA clone ChEST668k1 5', mRNA sequence.    70  1e-09  2
BU389303|BU389303.1 603803393F1 CSEQCHN57 Gallus gallus cDNA clone ChEST778i24 5', mRNA sequence.    70  1e-09  2
BU136699|BU136699.1 603122314F1 CSEQCHL23 Gallus gallus cDNA clone ChEST86k3 5', mRNA sequence.    70  2e-09  2
BU381773|BU381773.1 603568576F1 CSEQCHN75 Gallus gallus cDNA clone ChEST526g20 5', mRNA sequence.    70  2e-09  2
BU321429|BU321429.1 603855007F1 CSEQCHN62 Gallus gallus cDNA clone ChEST857n2 5', mRNA sequence.    70  2e-09  2
BU411544|BU411544.1 603152367F1 CSEQRBL04 Gallus gallus cDNA clone ChEST161e17 5', mRNA sequence.    70  2e-09  2
AJ454781|AJ454781.1 Gallus gallus EST, clone library riken1, clone 3l20r1.    70  2e-09  2
BU387281|BU387281.1 603858062F1 CSEQCHN75 Gallus gallus cDNA clone ChEST865k15 5', mRNA sequence.    70  2e-09  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C70) RecName: Full=Pyruvate dehydrogenase E1 component subun...   351   2e-95
CR761539_1(CR761539|pid:none) Xenopus tropicalis finished cDNA, ...   174   4e-42
EU186336_1(EU186336|pid:none) Brassica rapa clone S66 pyruvate d...   174   4e-42
BC080995_1(BC080995|pid:none) Xenopus laevis pyruvate dehydrogen...   171   3e-41
BC106670_1(BC106670|pid:none) Xenopus laevis pyruvate dehydrogen...   171   3e-41
AJ620469_1(AJ620469|pid:none) Euglena gracilis mRNA for pyruvate...   170   4e-41
(Q8H1Y0) RecName: Full=Pyruvate dehydrogenase E1 component subun...   170   4e-41
BT059393_1(BT059393|pid:none) Salmo salar clone ssal-rgf-519-230...   169   1e-40
BT036232_1(BT036232|pid:none) Zea mays full-length cDNA clone ZM...   168   1e-40
EU960716_1(EU960716|pid:none) Zea mays clone 227859 unknown mRNA.     168   1e-40
protein update 2009. 4.14
PSORT 

 psg: 0.67  gvh: 0.42  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for FCL-AA07 is nuc
5' end seq. ID FCL-AA07F
5' end seq. 
>FCL-AA07F.Seq
CAAAATAAAAAATGTTATCAAATTTTTTAAAAGTCAACAGTAAAGCACTAGGACATATAA
GAACTTTTGCCTCAAAGAGTGGTGAAATTAAACACAATTTTAAAAAAGCCGATACATACT
TATGTGATGGTCCATCTGACTCAACTGTTACCAACAAAGATGAACTCATTTCATTCTTCA
CTGAAATGTCAAGATTTAGAAGACTCGAAACTGTTTGTGATGGTTTATACAAAAAAAAAT
TAATTAGAGGTTTCTGTCATTTATACACTGGTCAAGAAGCTGTTTGTGCAGGTTTAGAAA
GTGCAATTACTAAAGATGATCATATTATTACAGCATACAGAGATCACACTTATATGTTAT
CAAGAGGAGCAACACCAGAAGAAATTTTTGCAGAATTATTAATGAAAGAAACTGGTTGTT
CAAAGGGTAAAGGTGGTTCAATGCATATGTTTACAAAGAATTTCTATGGTGGTAATGGTA
TTGTTGGTGCTCAATGTCCACTTGGTGCTGGTATTGCCTTTTGCACA----------
Length of 5' end seq. 527
3' end seq. ID FCL-AA07Z
3' end seq. 
>FCL-AA07Z.Seq
----------ATGGAAAAAGCCTCTGAAAAAGCTATCGCTGCTCCATTACCACAAGCTCG
TGAACTCTTTACCAACGTTTACCTCCAAGAAGTTCCNGTANGAGGTGTTGAATTTGTTAA
CAGTTTCAAACCATAAATTAATATTAACTTTTTTTACTTATTAAAAAAAAAAGTTTTAAT
TTTTAAAAAAAAAAAAAAAATAAAAAAATAAAAAAAAAAAAATATATAAAAATTTTAATT
AAAATAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 253
Connected seq. ID FCL-AA07P
Connected seq. 
>FCL-AA07P.Seq
CAAAATAAAAAATGTTATCAAATTTTTTAAAAGTCAACAGTAAAGCACTAGGACATATAA
GAACTTTTGCCTCAAAGAGTGGTGAAATTAAACACAATTTTAAAAAAGCCGATACATACT
TATGTGATGGTCCATCTGACTCAACTGTTACCAACAAAGATGAACTCATTTCATTCTTCA
CTGAAATGTCAAGATTTAGAAGACTCGAAACTGTTTGTGATGGTTTATACAAAAAAAAAT
TAATTAGAGGTTTCTGTCATTTATACACTGGTCAAGAAGCTGTTTGTGCAGGTTTAGAAA
GTGCAATTACTAAAGATGATCATATTATTACAGCATACAGAGATCACACTTATATGTTAT
CAAGAGGAGCAACACCAGAAGAAATTTTTGCAGAATTATTAATGAAAGAAACTGGTTGTT
CAAAGGGTAAAGGTGGTTCAATGCATATGTTTACAAAGAATTTCTATGGTGGTAATGGTA
TTGTTGGTGCTCAATGTCCACTTGGTGCTGGTATTGCCTTTTGCACA----------ATG
GAAAAAGCCTCTGAAAAAGCTATCGCTGCTCCATTACCACAAGCTCGTGAACTCTTTACC
AACGTTTACCTCCAAGAAGTTCCNGTANGAGGTGTTGAATTTGTTAACAGTTTCAAACCA
TAAATTAATATTAACTTTTTTTACTTATTAAAAAAAAAAGTTTTAATTTTTAAAAAAAAA
AAAAAAATAAAAAAATAAAAAAAAAAAAATATATAAAAATTTTAATTAAAATAAAAAAAA
AAAAAAAAAA
Length of connected seq. 780
Full length Seq ID -
Full length Seq. -
Length of full length seq. -