>FCL-AA06 (FCL-AA06Q) /CSM/FCL/FCL-AA/FCL-AA06Q.Seq.d/
AAAATCCCAATTTCATTAGCAGTGGAAGTAACGGAATGAATTGGGGTGGTTCTTTGAACA
CTTGTGACTCTGGAGGATTCAATAGTTTTGGTTGCGACAGTGGCGGTGGTGGCTTTGGTT
GCGACAGTGGTGGTGGTGGTTTTGGTTGCGACAGTGGTGGTGGTGGTTTTGGTGGCTGTG
ATAGTGGAAGTTCATTTTAATATTTTTTAAAAAAATAATTTTTAATTAAATAATTTTAAA
ATAATTTTATTTGAAATAAATGTTCTATCATTCAAATTAAAATAAAATAATTAAGTAAAT
TTTTTCAACCTATTTAAATTGGTGCATACATGTATGTATGCATGTATGTTGAGAATGAGT
GGTTGTTACTTGGGGGTTAAGTGGTTTTGCAAATTATCTTAAAATATTTATTTTAACACA
TAAAAAAATAATAACAATTTTTTTTTTTTATTATTTTTATGTGTTAAAATAATTATATAA
TATCTTCTTTTTTTAATTTTTATATTACAATATGTAGTTTAAAAAAGGGAATAATCTCAT
TTATTTATATTTTTATAAATATGGATCGTTATAAATGATCTTATCAAAAAAAGAAAAAAC
GATTATTTTATCATATAATTGGGGGTAAATTCGAATTGTGTGGTTGTTATTGTGTTTTTG
TGAGTTTTGTAATTTGTATTATAACAACTGGGGTATATTTATCTGTTAATATCAACATGG
TGTAAATTTGTTAATTGAATTTATTTTTATTATAATACAATATAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

NPNFISSGSNGMNWGGSLNTCDSGGFNSFGCDSGGGGFGCDSGGGGFGCDSGGGGFGGCD
SGSSF*yflkk*flik*f*nnfi*nkcsiiqikik*lskffqpi*igaymyvcmyvenew
lllgg*vvlqiilkylf*hikk**qffffiifmc*nnyiissffnfyiticslkkgiisf
iyifinmdryk*syqkkkkrlfyhiiggkfelcgcycvfvsfviciittgvylsvninmv
*ic*lnlfll*ynikkkkkkkkk

Frame A:
kipislavevte*igvvl*tlvtledsivlvatvavvalvatvvvvvlvatvvvvvlvav
ivevhfnif*knnf*lnnfkiilfeinvlsfklk*nn*vnffnlfklvhtcmyacmlrms
gcylgvkwfckls*niyfnt*knnnnfffllflcvkiii*yllflifilqyvv*kre*sh
lfifl*iwivindlikkrkndyfii*lgvnsncvvvivfl*vl*fvl*qlgyiyllistw
ckfvn*iyfyynti*kkkkkkkk


Frame B:
ksqfh*qwk*rnelgwffehl*lwriq*fwlrqwrwwlwlrqwwwwfwlrqwwwwfwwl*
*wkfiliffkkiifn*iilk*fylk*mfyhsn*nkiik*ifstylnwcihvcmhvc*e*v
vvtwglsgfanylkifilthkkiitifffyyfyvlk*lynifff*flyynm*fkkgnnli
ylyfykygsl*milskkektiilsynwg*irivwlllcfcefcnlyynnwgific*yqhg
vnlliefifiiiqykkkkkkkkk


Frame C:
NPNFISSGSNGMNWGGSLNTCDSGGFNSFGCDSGGGGFGCDSGGGGFGCDSGGGGFGGCD
SGSSF*yflkk*flik*f*nnfi*nkcsiiqikik*lskffqpi*igaymyvcmyvenew
lllgg*vvlqiilkylf*hikk**qffffiifmc*nnyiissffnfyiticslkkgiisf
iyifinmdryk*syqkkkkrlfyhiiggkfelcgcycvfvsfviciittgvylsvninmv
*ic*lnlfll*ynikkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA06 (FCL-AA06Q) /CSM/FCL/FCL-AA/FCL-AA06Q.Seq.d/                 325   6e-88
VSD650 (VSD650Q) /CSM/VS/VSD6-C/VSD650Q.Seq.d/                         40   0.050
VHD161 (VHD161Q) /CSM/VH/VHD1-C/VHD161Q.Seq.d/                         40   0.050
SLC460 (SLC460Q) /CSM/SL/SLC4-C/SLC460Q.Seq.d/                         40   0.050
SFJ871 (SFJ871Q) /CSM/SF/SFJ8-C/SFJ871Q.Seq.d/                         40   0.050
SFC320 (SFC320Q) /CSM/SF/SFC3-A/SFC320Q.Seq.d/                         40   0.050
SFC116 (SFC116Q) /CSM/SF/SFC1-A/SFC116Q.Seq.d/                         40   0.050
CHR879 (CHR879Q) /CSM/CH/CHR8-D/CHR879Q.Seq.d/                         40   0.050
CFI787 (CFI787Q) /CSM/CF/CFI7-D/CFI787Q.Seq.d/                         40   0.050
VFJ795 (VFJ795Q) /CSM/VF/VFJ7-D/VFJ795Q.Seq.d/                         38   0.20

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116959|AC116959.2 Dictyostelium discoideum chromosome 2 map 4545040-4559643 strain AX4, complete sequence.   325   0.0    7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   1e-11  18
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    36   1e-10  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   6e-09  16
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12 section 8 of 9 of the complete sequence.    36   7e-09  15
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   7e-09  18
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    38   1e-08  16
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    38   2e-08  11
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   2e-08  17
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    38   3e-08  16

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 813,267,359

 psg: 0.83  gvh: 0.38  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for FCL-AA06 is cyt

>FCL-AA06E.Seq
AAAATCCCAATTTCATTAGCAGTGGAAGTAACGGAATGAATTGGGGTGGTTCTTTGAACA
CTTGTGACTCTGGAGGATTCAATAGTTTTGGTTGCGACAGTGGCGGTGGTGGCTTTGGTT
GCGACAGTGGTGGTGGTGGTTTTGGTTGCGACAGTGGTGGTGGTGGTTTTGGTGGCTGTG
ATAGTGGAAGTTCATTTTAATATTTTTTAAAAAAATAATTTTTAATTAAATAATTTTAAA
ATAATTTTATTTGAAATAAATGTTCTATCATTCAAATTAAAATAAAATAATTAAGTAAAT
TTTTTCAACCTATTTAAATTGGTGCATACATGTATGTATGCATGTATGTTGAGAATGAGT
GGTTGTTACTTGGGGGTTAAGTGGTTTTGCAAATTATCTTAAAATATTTATTTTAACACA
TAAAAAAATAATAACAATTTTTTTTTTTTATTATTTTTATGTGTTAAAATAATTATATAA
TATCTTCTTTTTTTAATTTTTATATTACAATATGTAGTTTAAAAAAGGGAATAATCTCAT
TTATTTATATTTTTATAAATATGGATCGTTATAAATGATCTTATCAAAAAAAGAAAAAAC
GATTATTTTATCATATAATTGGGGGTAAATTCGAATTGTGTGGTTGTTATTGTGTTTTTG
TGAGTTTTGTAATTTGTATTATAACAACTGGGGTATATTTATCTGTTAATATCAACATGG
TGTAAATTTGTTAATTGAATTTATTTTTATTATAATACAATATAAAAAAAAAAAAAAAAA
AAAAAAAAAAA