>FCL-AA05 (FCL-AA05Q) /CSM/FCL/FCL-AA/FCL-AA05Q.Seq.d/
XXXXXXXXXXTGGCGCCATCATTACTGGTGGAGGTGGTGTTGCTATCACTCAAGCTCAAC
CATCATACCAAGCTGATGCCGTTGCCACTTACATCAAAAGTGGTACTCTCCCACCATCAT
ATTCATAACAATGCCACCAATAGATTCTATCCAGATCTTACTCTTGTTGGTCATGCTTAT
GAAATCGCCGTTCCAAACACTCTCACCTCAAATACCTGTCCATGCGCCTTAGAAAGTGTT
GATGGTACCTCATGTTCATCACCAACTCTTGCTGGTATGATCTCTTTAATTAATGATAAA
TTAATTGGTGCTGGTAAACCAACCCTCGGTTTCTTAAATCCATTATTATACCAAGCTGCC
AAAGAACAACCAAACGTTTTCAATGATATTACCACTGGTGCAAACAACTGTAACAGAGCT
TACTGTTGTCAATATGGTTACACCGCTACCACTGGTTATGATGCTGCCTCAGGTTTAGGT
TCAATTAACTTTAAGAACTTTGAACAATACGTTTTAAGTTTAAACTAAATAATATAATAT
AATAAATATATAAATAAATATATAATCGATTTAACATTGAATTTTATTAATAATAATAAT
AAAAAAAAAAAAA

---APSLLVEVVLLSLKLNHHTKLMPLPLTSKVVLSHHHIHNNATNRFYPDLTLVGHAYE
IAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAK
EQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN*ii*yn
kyinkyiidltlnfinnnnkkkk

Frame A:
---gaiitggggvaitqaqpsyqadavatyiksgtlppsys*qchq*ilsrsyscwscl*
nrrskhshlkylsmrlrkc*wylmfitnscwydlfn***inwcw*tnprflksiiipscq
rttkrfq*yyhwckql*qslllsiwlhryhwl*cclrfrfn*l*el*tirfkfklnnii*
*iyk*iynrfniefy*****kkk


Frame B:
---APSLLVEVVLLSLKLNHHTKLMPLPLTSKVVLSHHHIHNNATNRFYPDLTLVGHAYE
IAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAK
EQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN*ii*yn
kyinkyiidltlnfinnnnkkkk


Frame C:
---rhhywwrwccyhssstiips*crchlhqkwysptiifitmppidsiqillllvmlmk
spfqtlspqipvhap*kvlmvphvhhqlllv*sl*lmin*lvlvnqpsvs*ihyytklpk
nnqtfsmilplvqttvteltvvnmvtplplvmmlpqv*vqltlrtlnntf*v*tk*ynii
ni*ini*si*h*illiiiikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA05 (FCL-AA05Q) /CSM/FCL/FCL-AA/FCL-AA05Q.Seq.d/                1021   0.0
VHQ324 (VHQ324Q) /CSM/VH/VHQ3-A/VHQ324Q.Seq.d/                       1005   0.0
VHQ134 (VHQ134Q) /CSM/VH/VHQ1-B/VHQ134Q.Seq.d/                       1005   0.0
VHP727 (VHP727Q) /CSM/VH/VHP7-B/VHP727Q.Seq.d/                       1005   0.0
VHP448 (VHP448Q) /CSM/VH/VHP4-B/VHP448Q.Seq.d/                       1005   0.0
VHP361 (VHP361Q) /CSM/VH/VHP3-C/VHP361Q.Seq.d/                       1005   0.0
VHO607 (VHO607Q) /CSM/VH/VHO6-A/VHO607Q.Seq.d/                       1005   0.0
VHO521 (VHO521Q) /CSM/VH/VHO5-A/VHO521Q.Seq.d/                       1005   0.0
VHN854 (VHN854Q) /CSM/VH/VHN8-C/VHN854Q.Seq.d/                       1005   0.0
VHN850 (VHN850Q) /CSM/VH/VHN8-C/VHN850Q.Seq.d/                       1005   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U27540|U27540.1 Dictyostelium discoideum vegetative stage specific V4-7 mRNA, partial cds.   668  0.0  3
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    54  8e-06  4
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42  0.48  3
AI317916|AI317916.1 SWOv3MCAM07D03SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM07D03 5', mRNA sequence.    46  0.49  1
AY217738|AY217738.1 Eimeria tenella chloroplast, complete genome.    42  0.66  3
AP006403|AP006403.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT16P18, TM0289.    40  0.70  2
AE003847|AE003847.4 Drosophila melanogaster chromosome 4 section 4 of 5 of the complete sequence.    44  0.78  2
AC010916|AC010916.8 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR11A04, complete sequence.    44  1.1  2
AC006091|AC006091.10 Drosophila melanogaster, chromosome 3R, region 91F1-91F13, BAC clone BACR48G05, complete sequence.    44  1.2  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    44  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27540_1(U27540|pid:none) Dictyostelium discoideum vegetative st...   232   1e-72
AC115599_50(AC115599|pid:none) Dictyostelium discoideum chromoso...   157   2e-37
(Q8MZS4) RecName: Full=Physarolisin;          EC=3.4.21.103; Alt...   106   5e-24
AC116960_13(AC116960|pid:none) Dictyostelium discoideum chromoso...   103   4e-21
AM411678_1(AM411678|pid:none) Plasmodiophora brassicae ORF1 for ...   103   5e-21
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...    92   1e-18
(Q55CT0) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...    82   9e-15
AB276124_1(AB276124|pid:none) Actinophrys sol mRNA for sedolisin...    75   9e-14
AM920427_1468(AM920427|pid:none) Penicillium chrysogenum Wiscons...    77   4e-13
AM270317_43(AM270317|pid:none) Aspergillus niger contig An14c010...    75   1e-12

 psg: 0.75  gvh: 0.49  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for FCL-AA05 is nuc

>FCL-AA05Z.Seq
----------TGGCGCCATCATTACTGGTGGAGGTGGTGTTGCTATCACTCAAGCTCAAC
CATCATACCAAGCTGATGCCGTTGCCACTTACATCAAAAGTGGTACTCTCCCACCATCAT
ATTCATAACAATGCCACCAATAGATTCTATCCAGATCTTACTCTTGTTGGTCATGCTTAT
GAAATCGCCGTTCCAAACACTCTCACCTCAAATACCTGTCCATGCGCCTTAGAAAGTGTT
GATGGTACCTCATGTTCATCACCAACTCTTGCTGGTATGATCTCTTTAATTAATGATAAA
TTAATTGGTGCTGGTAAACCAACCCTCGGTTTCTTAAATCCATTATTATACCAAGCTGCC
AAAGAACAACCAAACGTTTTCAATGATATTACCACTGGTGCAAACAACTGTAACAGAGCT
TACTGTTGTCAATATGGTTACACCGCTACCACTGGTTATGATGCTGCCTCAGGTTTAGGT
TCAATTAACTTTAAGAACTTTGAACAATACGTTTTAAGTTTAAACTAAATAATATAATAT
AATAAATATATAAATAAATATATAATCGATTTAACATTGAATTTTATTAATAATAATAAT
AAAAAAAAAAAAA