FCL-AA03
Library FCL
(Link to library)
Clone ID FCL-AA03
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15092-1
Original site URL
Representative seq. ID FCL-AA03E
(Link to Original site)
Representative DNA sequence
>FCL-AA03 (FCL-AA03Q) /CSM/FCL/FCL-AA/FCL-AA03Q.Seq.d/
ACATAATGTTCCAAAAGAAAGCAATTGTTATTGATGGCAAAGGTCATTTGTTAGGTCGTT
TAGCCTCCGTTGTTGCTAAATCCCTCCTCTCTGGTCAAAAGATCGTTGTTGTCCGTTGTG
AAGAGCTCAACATCTCAGGTCCATTATCACGTAACAAATTAAAATGGGCTGATTTCCTCA
ACTTAACCATGAACACCAATCACGCTCGTGGTCACAGACACGGTAGATCACCATCAAAGA
TCTTCTGGAGAGCTGTCAGAGGTATGTTACCACACAAAACCCCACGTGGTCAAGCTGCCC
TCGATAACATGAAAGTTTTCGAAGGTGTCCCAGCCCCATACGATAAAGTCAAGAGAGTTG
TTGTCCCATCTGCTCTCCGTGTTGTCAAATTAAACACCACCCGTAAATACACCGTCTTAT
CTCGTTTATCCCAAGAAGTCGGTTGGAAATACAGAGCTGTTGTTGCCAAATTAGAAGTCC
AAAGAAAACAAAGATCTTCAACTTATTACCGTAAAGCTGCTTTAGTCAAAGCCTACAGAA
CTCAAGCCTTAAAGAAATTCTCTGCTTAAATTAAAAATCTTGAAACATAATAAATGATTT
TTTGCTTTAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.24
Translated Amino Acid sequence
IMFQKKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLN
LTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVV
VPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRT
QALKKFSA*iknlet**mifcfkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
t*cskrkqlllmakvic*vv*pplllnpsslvkrsllsvvksstsqvhyhvtn*ngliss
t*p*tpitlvvtdtvdhhqrssgelsevcyhtkphvvklpsit*kfskvsqphtiksrel
lshllsvlsn*tppvntpsylvypkksvgntelllpn*kskenkdlqlitvkll*skpte
lkp*rnsllklkilkhnk*ffalkkkkkk


Frame B:
hnvpkesncy*wqrsfvrsfslrcc*ipplwskdrccpl*raqhlrsiit*qikmg*fpq
lnhehqsrswsqtr*itikdllescqryvttqnptwsscpr*hesfrrcpspir*sqesc
cpicspccqikhhp*ihrlisfiprsrleiqscccqirspkktkifnllp*scfsqslqn
sslkeilcln*ks*niindfll*kkkkk


Frame C:
IMFQKKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLN
LTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVV
VPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRT
QALKKFSA*iknlet**mifcfkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA03 (FCL-AA03Q) /CSM/FCL/FCL-AA/FCL-AA03Q.Seq.d/ 1205 0.0
FC-BQ12 (FC-BQ12Q) /CSM/FC/FC-BQ/FC-BQ12Q.Seq.d/ 1205 0.0
FC-028 (FC-028Q) /CSM/CG/CG-FC/FC-028Q.Seq.d/ 1205 0.0
VSJ620 (VSJ620Q) /CSM/VS/VSJ6-A/VSJ620Q.Seq.d/ 1203 0.0
SLH873 (SLH873Q) /CSM/SL/SLH8-D/SLH873Q.Seq.d/ 1203 0.0
FC-AB08 (FC-AB08Q) /CSM/FC/FC-AB/FC-AB08Q.Seq.d/ 1197 0.0
SLE766 (SLE766Q) /CSM/SL/SLE7-C/SLE766Q.Seq.d/ 1195 0.0
FC-BF03 (FC-BF03Q) /CSM/FC/FC-BF/FC-BF03Q.Seq.d/ 1179 0.0
SLH692 (SLH692Q) /CSM/SL/SLH6-D/SLH692Q.Seq.d/ 1178 0.0
FC-AB34 (FC-AB34Q) /CSM/FC/FC-AB/FC-AB34Q.Seq.d/ 1178 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 1176 0.0 1
AZ930376|AZ930376.1 474.dhz53e07.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz53e07.s1, DNA sequence. 80 3e-22 4
AX820092|AX820092.1 Sequence 1842 from Patent EP1338608. 62 9e-22 5
CF430444|CF430444.1 PH1_28_E11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_28_E11_A002 3', mRNA sequence. 76 2e-13 2
CA851205|CA851205.1 D11C04_E16_06.ab1 cDNA Peking library 2, 4 day SCN3 Glycine max cDNA clone D11C04 5', mRNA sequence. 72 2e-12 2
Z38059|Z38059.1 S.cerevisiae chromosome IX lambda clones 4357-3717. 52 4e-12 6
AL400702|AL400702.1 T7 end of clone AS0AA023C05 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 54 1e-11 4
T37589|T37589.1 EST102765 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 62 7e-11 3
T37941|T37941.1 EST103256 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 62 9e-10 2
T37913|T37913.1 EST103209 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence. 56 5e-08 2
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q553M7) RecName: Full=60S ribosomal protein L13a; 370 e-101
FN357714_20(FN357714|pid:none) Schistosoma mansoni genome sequen... 233 3e-60
AY815942_1(AY815942|pid:none) Schistosoma japonicum SJCHGC04249 ... 233 3e-60
EU247111_1(EU247111|pid:none) Lycosa singoriensis 60S ribosomal ... 228 1e-58
AK222747_1(AK222747|pid:none) Homo sapiens mRNA for ribosomal pr... 227 2e-58
AB170257_1(AB170257|pid:none) Macaca fascicularis brain cDNA clo... 227 2e-58
BC004900_1(BC004900|pid:none) Homo sapiens ribosomal protein L13... 226 5e-58
(Q3SZ90) RecName: Full=60S ribosomal protein L13a; &BC103039_1(... 225 7e-58
AF109186_1(AF109186|pid:none) Homo sapiens FWP004 mRNA, complete... 225 9e-58
BC043976_1(BC043976|pid:none) Xenopus laevis ribosomal protein L... 224 1e-57
protein update 2009. 7. 3
PSORT

psg: 0.59 gvh: 0.50 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.07
nuc: 0.16 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: cytoplasmic
24.0 %: mitochondrial

>> prediction for FCL-AA03 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FCL-AA03E
Full length Seq.
>FCL-AA03E.Seq
ACATAATGTTCCAAAAGAAAGCAATTGTTATTGATGGCAAAGGTCATTTGTTAGGTCGTT
TAGCCTCCGTTGTTGCTAAATCCCTCCTCTCTGGTCAAAAGATCGTTGTTGTCCGTTGTG
AAGAGCTCAACATCTCAGGTCCATTATCACGTAACAAATTAAAATGGGCTGATTTCCTCA
ACTTAACCATGAACACCAATCACGCTCGTGGTCACAGACACGGTAGATCACCATCAAAGA
TCTTCTGGAGAGCTGTCAGAGGTATGTTACCACACAAAACCCCACGTGGTCAAGCTGCCC
TCGATAACATGAAAGTTTTCGAAGGTGTCCCAGCCCCATACGATAAAGTCAAGAGAGTTG
TTGTCCCATCTGCTCTCCGTGTTGTCAAATTAAACACCACCCGTAAATACACCGTCTTAT
CTCGTTTATCCCAAGAAGTCGGTTGGAAATACAGAGCTGTTGTTGCCAAATTAGAAGTCC
AAAGAAAACAAAGATCTTCAACTTATTACCGTAAAGCTGCTTTAGTCAAAGCCTACAGAA
CTCAAGCCTTAAAGAAATTCTCTGCTTAAATTAAAAATCTTGAAACATAATAAATGATTT
TTTGCTTTAAAAAAAAAAAAAAAAAAA
Length of full length seq. 627