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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA02
Library FCL
(Link to library)
Clone ID FCL-AA02
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID FCL-AA02F
(Link to Original site)
Representative DNA sequence 
>FCL-AA02 (FCL-AA02Q) /CSM/FCL/FCL-AA/FCL-AA02Q.Seq.d/
ATTAAATACAAAATACAAATACAAATAACAAATACTTTACTATAGCTTTTTTTTCTTATT
TATTTCTCCAAATAATTTTTTAATATGCAAATCTTTGTTAAAACTCTCACTGGTAAGACT
ATCACTTTAGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGAT
AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGAT
GGTCGTACTCTCTCTGATTACAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGA
TTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACTTTAGAA
GTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGTATT
CCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTT
TCTGATTATAACATTCAAAAGGAGTCCACTCTCCATTTAGTTCTTAGATTAAGAGGTGGT
ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGTTGAAGGATCT
GATAATATTGAAAATGTTAAXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.24
Translated Amino Acid sequence 
ikykiqiqitntll*lffliyfsk*FFNMQIFVKTLTGKTITLEVEGSDNIENVKAKIQD
KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
VEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEGSDNIENV---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
ikykiqiqitntll*lffliyfsk*FFNMQIFVKTLTGKTITLEVEGSDNIENVKAKIQD
KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
VEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEGSDNIENV---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
lntkykyk*qilyysffflfispnnflicksllklslvrlsl*klkvliilkm*rlkski
kkvfhqinnvsfllvnn*kmvvlslitifkrnqlft*f*d*evvcksllklslvklsl*k
lkvliilkm*rlkfkikkvfhqinkd*slpvnn*kmvvlfliitfkrsplsi*fld*evv
cksllklslvklspwrlkdliilkml---

---kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
*iqntntnnkyftiaffsylflqiif*yanlc*nshw*dyhfrs*rf**y*kckg*npr*
rrystrsttshfcw*tirrwsysl*lqyskginsslsfkikrwyanlc*nshw*nyhfrs
*rf**y*kckg*nsr*rrystrstkinlcr*tirrwsysf*l*hskgvhspfss*ikrwy
anlc*nshw*nyhlgg*ri**y*kc*---

---kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA02 (FCL-AA02Q) /CSM/FCL/FCL-AA/FCL-AA02Q.Seq.d/                1181   0.0
AHI892 (AHI892Q) /CSM/AH/AHI8-D/AHI892Q.Seq.d/                       1140   0.0
AHL133 (AHL133Q) /CSM/AH/AHL1-B/AHL133Q.Seq.d/                       1116   0.0
AHB847 (AHB847Q) /CSM/AH/AHB8-B/AHB847Q.Seq.d/                       1065   0.0
SSC659 (SSC659Q) /CSM/SS/SSC6-C/SSC659Q.Seq.d/                       1023   0.0
SSF760 (SSF760Q) /CSM/SS/SSF7-C/SSF760Q.Seq.d/                       1001   0.0
SSC328 (SSC328Q) /CSM/SS/SSC3-B/SSC328Q.Seq.d/                        993   0.0
SSK786 (SSK786Q) /CSM/SS/SSK7-D/SSK786Q.Seq.d/                        894   0.0
SSK744 (SSK744Q) /CSM/SS/SSK7-B/SSK744Q.Seq.d/                        890   0.0
VFH690 (VFH690Q) /CSM/VF/VFH6-D/VFH690Q.Seq.d/                        882   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.  1118  0.0  2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.  1110  0.0  2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   878  0.0  2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   668  0.0  2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   632  e-177  2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   537  e-149  2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   537  e-149  2
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   537  e-149  2
CB305323|CB305323.1 102 Iso cDNA Isotricha sp. BBF-2003 cDNA clone I102 similar to ubiquitin, mRNA sequence.   289  e-107  2
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.     172  2e-97  3
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   347   3e-94
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   347   3e-94
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   345   8e-94
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   345   8e-94
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   345   8e-94
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   333   4e-90
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   333   4e-90
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   333   4e-90
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   333   4e-90
FJ438516_1(FJ438516|pid:none) Epinephelus coioides ubiquitin C v...   330   2e-89
protein update 2009. 4.14
PSORT 

 psg: 0.78  gvh: 0.38  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 4.29  erl: 0.00  erm: 0.80  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FCL-AA02 is nuc
5' end seq. ID FCL-AA02F
5' end seq. 
>FCL-AA02F.Seq
ATTAAATACAAAATACAAATACAAATAACAAATACTTTACTATAGCTTTTTTTTCTTATT
TATTTCTCCAAATAATTTTTTAATATGCAAATCTTTGTTAAAACTCTCACTGGTAAGACT
ATCACTTTAGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGAT
AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGAT
GGTCGTACTCTCTCTGATTACAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGA
TTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACTTTAGAA
GTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGTATT
CCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTT
TCTGATTATAACATTCAAAAGGAGTCCACTCTCCATTTAGTTCTTAGATTAAGAGGTGGT
ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGTTGAAGGATCT
GATAATATTGAAAATGTTAA----------
Length of 5' end seq. 620
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -