FCL-AA01
Library FCL
(Link to library)
Clone ID FCL-AA01
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16033-1
Original site URL
Representative seq. ID FCL-AA01P
(Link to Original site)
Representative DNA sequence
>FCL-AA01 (FCL-AA01Q) /CSM/FCL/FCL-AA/FCL-AA01Q.Seq.d/
GCAAATAATAATATTATGGGTATTGACTTTGGTACACATTTCGCATGTGTTGGTATTTTC
AAGAATGAAAGAATTGAAATCTGTCCAAATCAACAAGGTAACAGAACTACTCCATCAGTT
GTTTCATTCGTTGGTGACGATAAATTAGTTGGTGATGAAGCTAAAGCACAAATGGATAGA
AATCCATTAAATACAATTTATGATGTTAAAAGATTATTAGGTAGAAAAACTACTGACGAA
TTATTTGATCATGAAGTTAAAAAATTATCATTTAAAGTTACAACATATGAAGATAATAAT
GAAAAGATTGAATTTCAAGTTAACTATAAATCAAATGTTGTTACATTAACACCAATTGAA
ATTGCAACCAGTATTTTAGAACAAATTAAACATACTGCAGAGACATTTATTGGTGGTGAA
TCAATTAAGAAGGCCGTTATATCAGTACCAACAGATTTCACAGAGAAACAAAGAAACGAT
TTGAAAGAGGCAGCCACAGCAGCAGGTATTACAGTTGTTAGAATGATTCATGAACATTCA
GCAGTTGCATTAGCATATGGTTATGATCAAGTTAAGGAATGTTCAGAGACAACTAATGAA
TCAXXXXXXXXXXTTCCTTCATCTTCCCTCATTCCATGCAAACGTACTTTCACTTTAAAT
ACTTCCTCTGAAAATCAAGATAATCTTAATATGGCAGTCTATCAAGGTAGTGCACCACTC
GCCAAAGATAATCAATTGGTTTCACGTTTCATCTTTAAATCTTCTCCAAATCCAATCGAT
GTCACTTTTGAAATTGATAATAACAATACTTTATTAATTAAATCCGAACAAGCAAATTAT
TCAATTAAATTTTAAAAATTAAACTATTAAATATTATAAAAAAATTCAAATAATAATAAT
AATAATAATAATTAATAACAAATAAATAAAAATAAAAATAAAAAAAAAATAAAAAAAAGT
AATACACGGTAAATAATTTGATTTTCAAATTAAAAAATAGTATTAAAAAAAAAAAAAAAA
ATTA
sequence update 1996.12.24
Translated Amino Acid sequence
ANNNIMGIDFGTHFACVGIFKNERIEICPNQQGNRTTPSVVSFVGDDKLVGDEAKAQMDR
NPLNTIYDVKRLLGRKTTDELFDHEVKKLSFKVTTYEDNNEKIEFQVNYKSNVVTLTPIE
IATSILEQIKHTAETFIGGESIKKAVISVPTDFTEKQRNDLKEAATAAGITVVRMIHEHS
AVALAYGYDQVKECSETTNES---

---PSSSLIPCKRTFTLNTSSENQDNLNMAVYQGSAPLAKDNQLVSRFIFKSSPNPIDVT
FEIDNNNTLLIKSEQANYSIKF*klny*il*knsnnnnnnnn**qinknknkkkikksnt
r*ii*fsn*kivlkkkkki


Translated Amino Acid sequence (All Frames)
Frame A:
ANNNIMGIDFGTHFACVGIFKNERIEICPNQQGNRTTPSVVSFVGDDKLVGDEAKAQMDR
NPLNTIYDVKRLLGRKTTDELFDHEVKKLSFKVTTYEDNNEKIEFQVNYKSNVVTLTPIE
IATSILEQIKHTAETFIGGESIKKAVISVPTDFTEKQRNDLKEAATAAGITVVRMIHEHS
AVALAYGYDQVKECSETTNES---

---flhlpsfhanvlsl*ilplkikiiliwqsikvvhhspkiinwfhvsslnllqiqsms
llkliitily*lnpnkqiiqlnfkn*tikyykkiqiiiiiiiinnk*ikikikkk*kkvi
hgk*fdfqikk*y*kkkkkl

Frame B:
qiiilwvltlvhishvlvfsrmkelksvqinkvtellhqlfhslvtin*lvmklkhkwie
ih*iqfmmlkdy*veklltnylimklknyhlklqhmkiimkrlnfkltinqmllh*hqlk
lqpvf*nklnilqrhllvvnqlrrplyqyqqisqrnketi*krqpqqqvlqlle*fmniq
qlh*hmvmiklrnvqrqlmn---

---sfifphsmqtyfhfkyfl*ksr*s*ygslsr*cttrqr*sigftfhl*ifsksnrch
f*n***qyfin*irtsklfn*ilkikllniikkfk*******litnk*k*k*kknkkk*y
tvnnlifklknsikkkkkn

Frame C:
k**yygy*lwytfrmcwyfqe*kn*nlskstr*qnysiscfirw*r*isw**s*stng*k
sikynl*c*kiir*kny*rii*s*s*kiii*syni*r***kd*iss*l*ikccyintn*n
cnqyfrtn*tycrdiyww*in*egryistnrfhretkkrfergshssryysc*nds*tfs
scisiwl*ss*gmfrdn**i---

---PSSSLIPCKRTFTLNTSSENQDNLNMAVYQGSAPLAKDNQLVSRFIFKSSPNPIDVT
FEIDNNNTLLIKSEQANYSIKF*klny*il*knsnnnnnnnn**qinknknkkkikksnt
r*ii*fsn*kivlkkkkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FCL-AA01 (FCL-AA01Q) /CSM/FCL/FCL-AA/FCL-AA01Q.Seq.d/ 1592 0.0
FC-IC0721 (FC-IC0721Q) /CSM/FC-IC/FC-IC0721Q.Seq.d/ 819 0.0
SHE286 (SHE286Q) /CSM/SH/SHE2-D/SHE286Q.Seq.d/ 40 0.065
SFK215 (SFK215Q) /CSM/SF/SFK2-A/SFK215Q.Seq.d/ 40 0.065
SFK163 (SFK163Q) /CSM/SF/SFK1-C/SFK163Q.Seq.d/ 40 0.065
CHQ519 (CHQ519Q) /CSM/CH/CHQ5-A/CHQ519Q.Seq.d/ 40 0.065
CHG524 (CHG524Q) /CSM/CH/CHG5-A/CHG524Q.Seq.d/ 40 0.065
CFI746 (CFI746Q) /CSM/CF/CFI7-B/CFI746Q.Seq.d/ 40 0.065
AHO630 (AHO630Q) /CSM/AH/AHO6-B/AHO630Q.Seq.d/ 40 0.065
AFL219 (AFL219Q) /CSM/AF/AFL2-A/AFL219Q.Seq.d/ 40 0.065

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 32 0.12 11
AL435810|AL435810.1 T3 end of clone XBB0AA001E10 of library XBB0AA from strain CBS 4732 of Pichia angusta. 46 0.12 2
AC137365|AC137365.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 44 0.13 4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 40 0.14 11
AC096328|AC096328.9 Rattus norvegicus clone CH230-78B21, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.16 3
AC068637|AC068637.12 Homo sapiens chromosome 3 clone RP11-440C18, WORKING DRAFT SEQUENCE, 1 unordered pieces. 36 0.35 6
U20432|U20432.1 Dictyostelium discoideum TagB (tagB) gene, complete cds. 40 0.62 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 0.80 12
U49932|U49932.1 Pichia angusta heat shock protein 70 homolog (HSA2) gene, complete cds. 46 0.84 1
AL419034|AL419034.1 T7 end of clone AX0AA036E02 of library AX0AA from strain CBS 7064 of Pichia farinosa. 46 0.84 1
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MR6) RecName: Full=Heat shock 70-related protein 5; 401 e-110
(P14834) RecName: Full=Heat shock 70 kDa protein; Flags: Fragmen... 174 3e-42
M26595_1(M26595|pid:none) T.cruzi heat shock protein (HSP70) gen... 174 4e-42
AM502246_293(AM502246|pid:none) Leishmania infantum chromosome 28. 174 5e-42
AM502246_292(AM502246|pid:none) Leishmania infantum chromosome 28. 174 5e-42
CT005266_287(CT005266|pid:none) Leishmania major strain Friedlin... 174 5e-42
AY423868_1(AY423868|pid:none) Leishmania tarentolae 70 kDa heat ... 173 9e-42
AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he... 172 1e-41
EF442767_1(EF442767|pid:none) Trypanosoma rangeli isolate H14 cl... 172 1e-41
FJ222459_1(FJ222459|pid:none) Trypanosoma cruzi heat shock prote... 172 1e-41
protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.28 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for FCL-AA01 is cyt

5' end seq. ID FCL-AA01F
5' end seq.
>FCL-AA01F.Seq
GCAAATAATAATATTATGGGTATTGACTTTGGTACACATTTCGCATGTGTTGGTATTTTC
AAGAATGAAAGAATTGAAATCTGTCCAAATCAACAAGGTAACAGAACTACTCCATCAGTT
GTTTCATTCGTTGGTGACGATAAATTAGTTGGTGATGAAGCTAAAGCACAAATGGATAGA
AATCCATTAAATACAATTTATGATGTTAAAAGATTATTAGGTAGAAAAACTACTGACGAA
TTATTTGATCATGAAGTTAAAAAATTATCATTTAAAGTTACAACATATGAAGATAATAAT
GAAAAGATTGAATTTCAAGTTAACTATAAATCAAATGTTGTTACATTAACACCAATTGAA
ATTGCAACCAGTATTTTAGAACAAATTAAACATACTGCAGAGACATTTATTGGTGGTGAA
TCAATTAAGAAGGCCGTTATATCAGTACCAACAGATTTCACAGAGAAACAAAGAAACGAT
TTGAAAGAGGCAGCCACAGCAGCAGGTATTACAGTTGTTAGAATGATTCATGAACATTCA
GCAGTTGCATTAGCATATGGTTATGATCAAGTTAAGGAATGTTCAGAGACAACTAATGAA
TCA----------
Length of 5' end seq. 603
3' end seq. ID FCL-AA01Z
3' end seq.
>FCL-AA01Z.Seq
----------TTCCTTCATCTTCCCTCATTCCATGCAAACGTACTTTCACTTTAAATACT
TCCTCTGAAAATCAAGATAATCTTAATATGGCAGTCTATCAAGGTAGTGCACCACTCGCC
AAAGATAATCAATTGGTTTCACGTTTCATCTTTAAATCTTCTCCAAATCCAATCGATGTC
ACTTTTGAAATTGATAATAACAATACTTTATTAATTAAATCCGAACAAGCAAATTATTCA
ATTAAATTTTAAAAATTAAACTATTAAATATTATAAAAAAATTCAAATAATAATAATAAT
AATAATAATTAATAACAAATAAATAAAAATAAAAATAAAAAAAAAATAAAAAAAAGTAAT
ACACGGTAAATAATTTGATTTTCAAATTAAAAAATAGTATTAAAAAAAAAAAAAAAAATT
A
Length of 3' end seq. 411
Connected seq. ID FCL-AA01P
Connected seq.
>FCL-AA01P.Seq
GCAAATAATAATATTATGGGTATTGACTTTGGTACACATTTCGCATGTGTTGGTATTTTC
AAGAATGAAAGAATTGAAATCTGTCCAAATCAACAAGGTAACAGAACTACTCCATCAGTT
GTTTCATTCGTTGGTGACGATAAATTAGTTGGTGATGAAGCTAAAGCACAAATGGATAGA
AATCCATTAAATACAATTTATGATGTTAAAAGATTATTAGGTAGAAAAACTACTGACGAA
TTATTTGATCATGAAGTTAAAAAATTATCATTTAAAGTTACAACATATGAAGATAATAAT
GAAAAGATTGAATTTCAAGTTAACTATAAATCAAATGTTGTTACATTAACACCAATTGAA
ATTGCAACCAGTATTTTAGAACAAATTAAACATACTGCAGAGACATTTATTGGTGGTGAA
TCAATTAAGAAGGCCGTTATATCAGTACCAACAGATTTCACAGAGAAACAAAGAAACGAT
TTGAAAGAGGCAGCCACAGCAGCAGGTATTACAGTTGTTAGAATGATTCATGAACATTCA
GCAGTTGCATTAGCATATGGTTATGATCAAGTTAAGGAATGTTCAGAGACAACTAATGAA
TCA----------TTCCTTCATCTTCCCTCATTCCATGCAAACGTACTTTCACTTTAAAT
ACTTCCTCTGAAAATCAAGATAATCTTAATATGGCAGTCTATCAAGGTAGTGCACCACTC
GCCAAAGATAATCAATTGGTTTCACGTTTCATCTTTAAATCTTCTCCAAATCCAATCGAT
GTCACTTTTGAAATTGATAATAACAATACTTTATTAATTAAATCCGAACAAGCAAATTAT
TCAATTAAATTTTAAAAATTAAACTATTAAATATTATAAAAAAATTCAAATAATAATAAT
AATAATAATAATTAATAACAAATAAATAAAAATAAAAATAAAAAAAAAATAAAAAAAAGT
AATACACGGTAAATAATTTGATTTTCAAATTAAAAAATAGTATTAAAAAAAAAAAAAAAA
ATTA
Length of connected seq. 1014
Full length Seq ID -
Full length Seq. -
Length of full length seq. -